Advanced Search (OLGA)

Gene: Ccdc63 (coiled-coil domain containing 63) Rattus norvegicus

Analyze

Symbol:

Ccdc63

Name:

coiled-coil domain containing 63

RGD ID:

1562334

Description:

Predicted to be involved in cilium movement; outer dynein arm assembly; and spermatid development. Predicted to be active in axoneme. Orthologous to human CCDC63 (coiled-coil domain containing 63); INTERACTS WITH bisphenol A; cadmium dichloride; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain-containing protein 63; LOC304484; MGC114454; similar to hypothetical protein 4921511C16

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC63 (coiled-coil domain containing 63)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ccdc63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccdc63 (coiled-coil domain containing 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CCDC63 (coiled-coil domain containing 63)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC63 (coiled-coil domain containing 63)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccdc63 (coiled-coil domain containing 63)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14905	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG14905	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17083	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG17083	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	40,085,146 - 40,113,820 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	40,085,183 - 40,114,654 (+)	Ensembl				GRCr8
mRatBN7.2	12	34,424,388 - 34,453,080 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	34,424,344 - 34,453,085 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	35,596,901 - 35,625,505 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	36,208,114 - 36,236,718 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	35,260,594 - 35,289,198 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,905,120 - 39,950,719 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,913,628 - 39,950,641 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	41,820,509 - 41,828,135 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	12	41,785,149 - 41,799,002 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	35,622,123 - 35,652,555 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	36,095,026 - 36,120,962 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

melanoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

actinomycin D (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-hexachlorocyclohexane (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

camptothecin (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

ethanol (ISO)

ethylparaben (ISO)

genistein (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Nutlin-3 (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

sodium fluoride (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cilium movement (IBA)

outer dynein arm assembly (IBA)

spermatid development (ISO,ISS)

spermatogenesis (IEA)

Cellular Component

axoneme (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:26501274

Genomics

Comparative Map Data

Ccdc63
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	40,085,146 - 40,113,820 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	40,085,183 - 40,114,654 (+)	Ensembl				GRCr8
mRatBN7.2	12	34,424,388 - 34,453,080 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	34,424,344 - 34,453,085 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	35,596,901 - 35,625,505 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	36,208,114 - 36,236,718 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	35,260,594 - 35,289,198 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,905,120 - 39,950,719 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,913,628 - 39,950,641 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	41,820,509 - 41,828,135 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	12	41,785,149 - 41,799,002 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	35,622,123 - 35,652,555 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	36,095,026 - 36,120,962 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

CCDC63
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	110,844,486 - 110,907,535 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	110,846,769 - 110,907,535 (+)	Ensembl			hg38	GRCh38
GRCh37	12	111,284,791 - 111,345,339 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	109,769,194 - 109,829,721 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	110,911,504 - 110,972,027 (+)	NCBI		Celera
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	108,301,376 - 108,334,741 (+)	NCBI		HuRef
HuRef	12	108,335,338 - 108,361,810 (+)	NCBI		HuRef
CHM1_1	12	111,252,521 - 111,313,047 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	110,822,299 - 110,886,718 (+)	NCBI		T2T-CHM13v2.0

Ccdc63
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	122,246,115 - 122,276,143 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	122,246,103 - 122,278,886 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	122,108,052 - 122,138,080 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	122,108,040 - 122,140,823 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	122,558,065 - 122,588,071 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	122,368,673 - 122,398,679 (-)	NCBI		MGSCv36	mm8
Celera	5	119,199,057 - 119,227,555 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	62.17	NCBI

Ccdc63
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	7,673,285 - 7,707,011 (+)	Ensembl
ChiLan1.0	NW_004955482	7,673,495 - 7,707,065 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC63
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	118,908,704 - 118,973,321 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	118,905,108 - 118,969,725 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	108,417,758 - 108,477,163 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	111,810,462 - 111,870,065 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	111,816,429 - 111,870,006 (+)	Ensembl			panPan2	panpan1.1

CCDC63
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	8,587,306 - 8,623,558 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	8,587,784 - 8,652,946 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	8,750,471 - 8,786,738 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	8,846,969 - 8,883,275 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	8,850,690 - 8,883,273 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	8,803,726 - 8,839,988 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	8,866,472 - 8,901,892 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	8,818,758 - 8,855,259 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	155,734,773 - 155,766,937 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	3,717,003 - 3,744,570 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	3,716,920 - 3,744,633 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC63
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	32,140,517 - 32,203,935 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	32,140,323 - 32,300,930 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	34,055,103 - 34,112,953 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC63
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	106,089,480 - 106,151,071 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	106,096,208 - 106,151,012 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	138,939,315 - 139,026,988 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc63
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	21,115,159 - 21,145,188 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	21,114,125 - 21,149,269 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc63
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	31,697,198 - 31,726,652 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc63
116 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	51
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000046604
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

D12Rat100

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	34,452,461 - 34,452,594 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	39,950,101 - 39,950,233	NCBI	Rnor6.0
Rnor_5.0	12	41,827,517 - 41,827,649	UniSTS	Rnor5.0
RGSC_v3.4	12	35,651,936 - 35,652,069	RGD	RGSC3.4
RGSC_v3.4	12	35,651,937 - 35,652,069	UniSTS	RGSC3.4
Celera	12	36,120,344 - 36,120,476	UniSTS
RGSC_v3.1	12	35,515,324 - 35,515,457	RGD
FHH x ACI Map	12	34.74	UniSTS
FHH x ACI Map	12	34.74	RGD
Cytogenetic Map	12	q16	UniSTS

D12Got79

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	34,437,013 - 34,437,166 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	39,917,655 - 39,917,807	NCBI	Rnor6.0
Rnor_5.0	12	41,797,684 - 41,797,836	UniSTS	Rnor5.0
RGSC_v3.4	12	35,634,660 - 35,634,812	RGD	RGSC3.4
RGSC_v3.4	12	35,634,661 - 35,634,813	UniSTS	RGSC3.4
Celera	12	36,107,565 - 36,107,717	UniSTS
RGSC_v3.1	12	35,498,048 - 35,498,200	RGD
RH 3.4 Map	12	596.5	RGD
RH 3.4 Map	12	596.5	UniSTS
RH 2.0 Map	12	463.7	RGD
Cytogenetic Map	12	q16	UniSTS

BQ207717

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	34,429,938 - 34,430,135 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	39,910,582 - 39,910,778	NCBI	Rnor6.0
Rnor_5.0	12	41,790,611 - 41,790,807	UniSTS	Rnor5.0
RGSC_v3.4	12	35,627,586 - 35,627,782	UniSTS	RGSC3.4
Celera	12	36,100,490 - 36,100,686	UniSTS
RH 3.4 Map	12	608.7	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
12	10	27	68	40	40	14	63	14	6	164	115	7	45	15	50	26	5	5

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046604 ⟹ ENSRNOP00000043589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	40,085,217 - 40,114,654 (+)	Ensembl
mRatBN7.2 Ensembl	12	34,424,475 - 34,453,079 (+)	Ensembl
Rnor_6.0 Ensembl	12	39,913,628 - 39,950,641 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119110 ⟹ ENSRNOP00000083028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	40,085,183 - 40,113,819 (+)	Ensembl
mRatBN7.2 Ensembl	12	34,424,344 - 34,453,085 (+)	Ensembl

RefSeq Acc Id:

NM_001025665 ⟹ NP_001020836

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,085,217 - 40,113,820 (+)	NCBI
mRatBN7.2	12	34,424,475 - 34,453,080 (+)	NCBI
Rnor_6.0	12	39,905,120 - 39,950,719 (+)	NCBI
Rnor_5.0	12	41,785,149 - 41,799,002 (+)	NCBI
Rnor_5.0	12	41,820,509 - 41,828,135 (+)	NCBI
RGSC_v3.4	12	35,622,123 - 35,652,555 (+)	RGD
Celera	12	36,095,026 - 36,120,962 (+)	RGD

Sequence:

show sequence

CCATGATCCTCCACATAGTTCCAAGAAGGCTGCCATAGCTCCAGACATCAAAGCCTCGTACAAG
CAGAATCCCAACAGGAAAGGAAGATGGACCAGTTGCTGATTTCCATGGACTCAACCGTATCACA
GCCGCTGCAAATGGACATTGCAGACAGAGGAGACACTGAGAGAACGAGAAAGAAGTGGGCTTGC
TAGCTTTGACCTCCAGGACCCAGTGTCTAAGCAGAAAGGAAGCTTAGACGATTGAAGCAACAAA
GAAAGAAGGCCTCTTTAGGTCACCTGGGCATCCTCTTTCTCTGTCTTGCCCAGATGAAGAAACA
CAGGAGGAAGGTCTCTGAACCCCTTCCGGAACTTTCCGAGAAGGCCAAAGAGCAGTTGGCTGAG
GCAGAGCTACGGAAACTAAGGCAGCAGTTCCGGAAGATGGTAGACAGCCGAAAGTCTTCCAATT
TCCGCAACCAGCGGATGATCGCCAGCCAGTACAAGGAGATAGAGAATTTGAAAGCGGAGCAGGC
AGAGACCACCTTGCTTCTGAGCCTCGTGAAGTCGCCAAAGAACCTAGACCTCAACCAGAAAAAT
TTCACGGAGCTGCGCTTCCTGCTGCAGACCAAGGGGGACTACGAGGCTCTGATCTCCTCCATGA
AGGTGCTGCTGGGAGAACTGGATGACAAGATTGTTCAGATGGAGAGAAAGATCACAAACCAGAG
ACAGATCTTCTTGAAGACACAAGAGGCCAACAATCCCCGGAAGCTGCAGAAACAGATCCACATT
CTGGAGACCAGACTGAACCTGGTCACTGTCCACTTTGACACGATGTTGACCTCCAATGCCCAGC
TTCGGAAGGATATTGAGGATCTTCTCTTTGAGAAGGCTGCCTACGACCATGTCTACCAGCAGCT
TCAGCGGCGTCTGCAGACACAGAAGAAGACCATGAATGTGGCCATCGAGCAGTCTACCCAGGCC
TATGAGCAGAGAGTGGAAGCCATGGCTCGGATGGCTGCCATGAAGGACCGCCAGCAAAAAGACA
TCTCTCAGTACAACCTGGAGATCCGAGAGCTCGAACGCCTGTATGACCACGAGAACAAACTCAA
GTCCTTTCTGCTTGTCAAGCTCAATGACCGCACGGAATTCGAGGACCAGGCCAAGAAGCAGGAA
GCTGTCAAAATTAAGAAGCATGGGAAAAAGAGGAAGGGTGAGAGCTTTGAGAGCTACGAGGTGG
CCCATCTCCGACTGCTAAAGCTGGCTGAGAACGGGGACCTGAACCAGCTCACTGAGGACTTCCT
GGCCAAGGAGGAGAAGAATTTTGCTCGCTTCACCTATGTCACCGAGCTCAACAATGACATGGAG
ACCATGCACAAGAGGACCCAGCGGATCCAGGATGACATCATCAACCTGCGGTCACAGCAGCAGT
CCTCCCATGAGGGCACCCGGAACATCCTGAAACAGATGGAGGAGAAACTGAGGAAGACCACCGA
GGACACGGACATTTATGAGAACAGGTACAGGGAAATGAGCAAGACCCTGGAGTACCTCAAGAAC
TCAGTGGAGAAGCTGTTTAAGAAGATCAACTGCAATGCCACGGAGATCCTGGGGAAACTGGGTG
AGACTGGGAAGATCACGGACAGCAACCTTCAGCAGTACTTCGCTATCATAGAAAAGAAGACAAA
TGACCTCCTGCTTCTGGAGTCTTTCCGGCGCCTGCAGGAGGCAGAGGGGCCCGATGTTGATGTC
CCACAACCCTTTGTCAACCCCTTCTGGGGGGGCTCTGCCCTCCTCAAGCCCCCAGAGCCCTTAA
GGGTTGTGCCGCCTGTGTTTGGGGCAGACTCCTTCAGTGACAAAGTTGAAGAGGTTCCTCACAG
AGCTCTGTCCTGGGTGCAGTGGAATACCCTCTGGACCACAGTAGCCTCCGGCAGCTGGTCTTGG
AGAACTACTTTCAGAAGGAACGAGGAAAAGAACCACAGGAGACACTGTTGGAGAAGGGGGACGA
GATAAGGGTCAAGAAGAAGGTGATAAGCTGAACCCCGTGGGTGGCTGTATTCCACACCGAGAAA
ATAAATGTTTTCTTGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039089457 ⟹ XP_038945385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,085,149 - 40,113,820 (+)	NCBI
mRatBN7.2	12	34,424,392 - 34,453,080 (+)	NCBI

RefSeq Acc Id:

XM_039089459 ⟹ XP_038945387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,085,146 - 40,113,820 (+)	NCBI
mRatBN7.2	12	34,424,394 - 34,453,080 (+)	NCBI

RefSeq Acc Id:

XM_039089460 ⟹ XP_038945388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,085,153 - 40,113,820 (+)	NCBI
mRatBN7.2	12	34,424,393 - 34,453,080 (+)	NCBI

RefSeq Acc Id:

XM_039089461 ⟹ XP_038945389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,085,154 - 40,112,466 (+)	NCBI
mRatBN7.2	12	34,424,394 - 34,451,726 (+)	NCBI

RefSeq Acc Id:

XM_039089462 ⟹ XP_038945390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,085,150 - 40,104,609 (+)	NCBI
mRatBN7.2	12	34,424,388 - 34,445,746 (+)	NCBI

RefSeq Acc Id:

XM_063271316 ⟹ XP_063127386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,921 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271317 ⟹ XP_063127387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,091,007 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271318 ⟹ XP_063127388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,901 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271319 ⟹ XP_063127389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,925 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271320 ⟹ XP_063127390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,999 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271321 ⟹ XP_063127391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,901 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271322 ⟹ XP_063127392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,976 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271323 ⟹ XP_063127393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,921 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271324 ⟹ XP_063127394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,901 - 40,113,820 (+)	NCBI

RefSeq Acc Id:

XM_063271325 ⟹ XP_063127395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	40,090,973 - 40,104,609 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020836	(Get FASTA)	NCBI Sequence Viewer
	NP_001424282	(Get FASTA)	NCBI Sequence Viewer
	NP_001424283	(Get FASTA)	NCBI Sequence Viewer
	NP_001424284	(Get FASTA)	NCBI Sequence Viewer
	NP_001424285	(Get FASTA)	NCBI Sequence Viewer
	NP_001424286	(Get FASTA)	NCBI Sequence Viewer
	NP_001424287	(Get FASTA)	NCBI Sequence Viewer
	NP_001424288	(Get FASTA)	NCBI Sequence Viewer
	NP_001424289	(Get FASTA)	NCBI Sequence Viewer
	NP_001424290	(Get FASTA)	NCBI Sequence Viewer
	NP_001424291	(Get FASTA)	NCBI Sequence Viewer
	NP_001424292	(Get FASTA)	NCBI Sequence Viewer
	NP_001424293	(Get FASTA)	NCBI Sequence Viewer
	XP_038945385	(Get FASTA)	NCBI Sequence Viewer
	XP_038945387	(Get FASTA)	NCBI Sequence Viewer
	XP_038945388	(Get FASTA)	NCBI Sequence Viewer
	XP_038945389	(Get FASTA)	NCBI Sequence Viewer
	XP_038945390	(Get FASTA)	NCBI Sequence Viewer
	XP_063127386	(Get FASTA)	NCBI Sequence Viewer
	XP_063127387	(Get FASTA)	NCBI Sequence Viewer
	XP_063127388	(Get FASTA)	NCBI Sequence Viewer
	XP_063127389	(Get FASTA)	NCBI Sequence Viewer
	XP_063127390	(Get FASTA)	NCBI Sequence Viewer
	XP_063127391	(Get FASTA)	NCBI Sequence Viewer
	XP_063127392	(Get FASTA)	NCBI Sequence Viewer
	XP_063127393	(Get FASTA)	NCBI Sequence Viewer
	XP_063127394	(Get FASTA)	NCBI Sequence Viewer
	XP_063127395	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97409	(Get FASTA)	NCBI Sequence Viewer
	EDM13708	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043589
	ENSRNOP00000043589.6
	ENSRNOP00000083028
GenBank Protein	Q4V8F7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020836 ⟸ NM_001025665

- UniProtKB:

Q4V8F7 (UniProtKB/Swiss-Prot), F1LTP5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKKHRRKVSEPLPELSEKAKEQLAEAELRKLRQQFRKMVDSRKSSNFRNQRMIASQYKEIENLK
AEQAETTLLLSLVKSPKNLDLNQKNFTELRFLLQTKGDYEALISSMKVLLGELDDKIVQMERKI
TNQRQIFLKTQEANNPRKLQKQIHILETRLNLVTVHFDTMLTSNAQLRKDIEDLLFEKAAYDHV
YQQLQRRLQTQKKTMNVAIEQSTQAYEQRVEAMARMAAMKDRQQKDISQYNLEIRELERLYDHE
NKLKSFLLVKLNDRTEFEDQAKKQEAVKIKKHGKKRKGESFESYEVAHLRLLKLAENGDLNQLT
EDFLAKEEKNFARFTYVTELNNDMETMHKRTQRIQDDIINLRSQQQSSHEGTRNILKQMEEKLR
KTTEDTDIYENRYREMSKTLEYLKNSVEKLFKKINCNATEILGKLGETGKITDSNLQQYFAIIE
KKTNDLLLLESFRRLQEAEGPDVDVPQPFVNPFWGGSALLKPPEPLRVVPPVFGADSFSDKVEE
VPHRALSWVQWNTLWTTVASGSWSWRTTFRRNEEKNHRRHCWRRGTR

hide sequence

Ensembl Acc Id:

ENSRNOP00000043589 ⟸ ENSRNOT00000046604

RefSeq Acc Id:	XP_038945390 ⟸ XM_039089462
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038945385 ⟸ XM_039089457
- Peptide Label:	isoform X1
- UniProtKB:	F1LTP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945388 ⟸ XM_039089460
- Peptide Label:	isoform X5
- UniProtKB:	F1LTP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945387 ⟸ XM_039089459
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZZ40 (UniProtKB/TrEMBL), F1LTP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945389 ⟸ XM_039089461
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000083028 ⟸ ENSRNOT00000119110

RefSeq Acc Id:	XP_063127388 ⟸ XM_063271318
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063127394 ⟸ XM_063271324
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063127391 ⟸ XM_063271321
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063127386 ⟸ XM_063271316
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063127393 ⟸ XM_063271323
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063127389 ⟸ XM_063271319
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063127395 ⟸ XM_063271325
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063127392 ⟸ XM_063271322
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063127390 ⟸ XM_063271320
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063127387 ⟸ XM_063271317
- Peptide Label:	isoform X3

Protein Domains

ODAD1 central coiled coil region

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V8F7-F1-model_v2	AlphaFold	Q4V8F7	1-559	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562334	AgrOrtholog
BioCyc Gene	G2FUF-19230	BioCyc
Ensembl Genes	ENSRNOG00000034266	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000046604	ENTREZGENE
	ENSRNOT00000046604.6	UniProtKB/Swiss-Prot
	ENSRNOT00000119110	ENTREZGENE
IMAGE_CLONE	IMAGE:7454160	IMAGE-MGC_LOAD
InterPro	ODA-DC/CCD	UniProtKB/Swiss-Prot
	ODAD1_CC	UniProtKB/Swiss-Prot
KEGG Report	rno:304484	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114454	IMAGE-MGC_LOAD
NCBI Gene	304484	ENTREZGENE
PANTHER	PTHR21694:SF18	UniProtKB/Swiss-Prot
	UNCHARACTERIZED	UniProtKB/Swiss-Prot
Pfam	DUF6872	UniProtKB/Swiss-Prot
PhenoGen	Ccdc63	PhenoGen
RatGTEx	ENSRNOG00000034266	RatGTEx
UniProt	A0A8I5ZZ40	ENTREZGENE, UniProtKB/TrEMBL
	CCD63_RAT	UniProtKB/Swiss-Prot
	F1LTP5	ENTREZGENE, UniProtKB/TrEMBL
	Q4V8F7	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Ccdc63	coiled-coil domain containing 63	LOC304484	similar to hypothetical protein 4921511C16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC304484	similar to hypothetical protein 4921511C16			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD