Tcp11l1 (t-complex 11 like 1) - Rat Genome Database

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Gene: Tcp11l1 (t-complex 11 like 1) Rattus norvegicus
Analyze
Symbol: Tcp11l1
Name: t-complex 11 like 1
RGD ID: 1562313
Description: Predicted to be involved in signal transduction. Predicted to be located in microtubule. Orthologous to human TCP11L1 (t-complex 11 like 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC499846; RGD1562313; similar to RIKEN cDNA C130096D04 gene; t-complex 11, testis-specific-like 1; T-complex protein 11-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83111,478,787 - 111,547,553 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3111,453,221 - 111,546,454 (-)EnsemblGRCr8
mRatBN7.2391,047,006 - 91,092,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,998,270 - 91,092,006 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx394,550,387 - 94,585,662 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03103,149,454 - 103,184,730 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,979,523 - 101,014,809 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,621,433 - 94,657,467 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,624,071 - 94,657,377 (-)Ensemblrn6Rnor6.0
Rnor_5.03101,247,426 - 101,282,177 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4390,010,390 - 90,046,373 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera390,115,833 - 90,150,770 (-)NCBICelera
Cytogenetic Map3q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
microtubule  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21525035  


Genomics

Comparative Map Data
Tcp11l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83111,478,787 - 111,547,553 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3111,453,221 - 111,546,454 (-)EnsemblGRCr8
mRatBN7.2391,047,006 - 91,092,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,998,270 - 91,092,006 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx394,550,387 - 94,585,662 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03103,149,454 - 103,184,730 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,979,523 - 101,014,809 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,621,433 - 94,657,467 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,624,071 - 94,657,377 (-)Ensemblrn6Rnor6.0
Rnor_5.03101,247,426 - 101,282,177 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4390,010,390 - 90,046,373 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera390,115,833 - 90,150,770 (-)NCBICelera
Cytogenetic Map3q32NCBI
TCP11L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,039,572 - 33,073,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,039,417 - 33,105,943 (+)Ensemblhg38GRCh38
GRCh371133,061,118 - 33,095,109 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,017,720 - 33,051,454 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1133,207,691 - 33,241,809 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1132,755,664 - 32,789,782 (+)NCBIHuRef
CHM1_11133,060,432 - 33,094,574 (+)NCBICHM1_1
T2T-CHM13v2.01133,175,146 - 33,209,116 (+)NCBIT2T-CHM13v2.0
Tcp11l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392104,497,587 - 104,542,525 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2104,487,633 - 104,542,514 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382104,667,242 - 104,712,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,657,288 - 104,712,169 (-)Ensemblmm10GRCm38
MGSCv372104,520,137 - 104,552,319 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362104,480,819 - 104,513,001 (-)NCBIMGSCv36mm8
Celera2105,918,606 - 105,947,980 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.87NCBI
Tcp11l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,130,304 - 13,161,318 (-)Ensembl
ChiLan1.0NW_00495542213,097,785 - 13,161,623 (-)NCBIChiLan1.0ChiLan1.0
TCP11L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2935,262,724 - 35,302,885 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11135,265,855 - 35,300,976 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,015,724 - 33,050,236 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,901,531 - 32,934,916 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,901,584 - 32,948,458 (+)EnsemblpanPan2panpan1.1
TCP11L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11834,566,940 - 34,605,678 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1834,570,501 - 34,601,648 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1834,178,597 - 34,217,379 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01835,178,063 - 35,216,862 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1835,177,453 - 35,216,831 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11834,746,563 - 34,785,342 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01834,330,489 - 34,369,088 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,967,883 - 35,004,468 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tcp11l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,716,056 - 31,757,145 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365334,840,054 - 4,881,364 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365334,839,661 - 4,881,990 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCP11L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl227,855,471 - 27,899,766 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1227,854,394 - 27,903,166 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2230,353,850 - 30,399,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCP11L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1132,145,355 - 32,177,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl132,146,244 - 32,177,155 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038129,301,279 - 129,339,249 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcp11l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,150,338 - 14,180,501 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476714,144,617 - 14,180,626 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tcp11l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1582,589,390 - 82,619,357 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tcp11l1
407 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:501
Count of miRNA genes:243
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000060311
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
BI293324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2391,057,258 - 91,057,367 (+)MAPPERmRatBN7.2
Rnor_6.0394,623,273 - 94,623,381NCBIRnor6.0
Rnor_5.03101,248,296 - 101,248,404UniSTSRnor5.0
RGSC_v3.4390,011,260 - 90,011,368UniSTSRGSC3.4
Celera390,116,703 - 90,116,811UniSTS
RH 3.4 Map3731.0UniSTS
Cytogenetic Map3q32UniSTS
BF391084  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2391,057,816 - 91,057,983 (+)MAPPERmRatBN7.2
Rnor_6.0394,623,831 - 94,623,997NCBIRnor6.0
Rnor_5.03101,248,854 - 101,249,020UniSTSRnor5.0
RGSC_v3.4390,011,818 - 90,011,984UniSTSRGSC3.4
Celera390,117,261 - 90,117,427UniSTS
RH 3.4 Map3731.8UniSTS
Cytogenetic Map3q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060311   ⟹   ENSRNOP00000057060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3111,453,221 - 111,546,454 (-)Ensembl
mRatBN7.2 Ensembl390,998,270 - 91,092,006 (-)Ensembl
Rnor_6.0 Ensembl394,624,269 - 94,653,682 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077484   ⟹   ENSRNOP00000073788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3111,511,256 - 111,546,454 (-)Ensembl
mRatBN7.2 Ensembl391,056,389 - 91,091,587 (-)Ensembl
Rnor_6.0 Ensembl394,624,071 - 94,657,377 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116484   ⟹   ENSRNOP00000080061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3111,478,811 - 111,546,454 (-)Ensembl
mRatBN7.2 Ensembl391,055,320 - 91,092,006 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150624   ⟹   ENSRNOP00000100025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3111,501,885 - 111,546,454 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000158084   ⟹   ENSRNOP00000101296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3111,466,908 - 111,546,454 (-)Ensembl
RefSeq Acc Id: NM_001109202   ⟹   NP_001102672
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83111,511,256 - 111,546,454 (-)NCBI
mRatBN7.2391,056,389 - 91,091,587 (-)NCBI
Rnor_6.0394,622,403 - 94,657,467 (-)NCBI
Rnor_5.03101,247,426 - 101,282,177 (-)NCBI
RGSC_v3.4390,010,390 - 90,046,373 (-)RGD
Celera390,115,833 - 90,150,770 (-)RGD
Sequence:
RefSeq Acc Id: XM_017591977   ⟹   XP_017447466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83111,501,876 - 111,547,515 (-)NCBI
mRatBN7.2391,057,146 - 91,091,530 (-)NCBI
Rnor_6.0394,621,433 - 94,657,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105674   ⟹   XP_038961602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83111,501,876 - 111,547,553 (-)NCBI
mRatBN7.2391,057,146 - 91,092,687 (-)NCBI
RefSeq Acc Id: XM_063284359   ⟹   XP_063140429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83111,478,787 - 111,547,515 (-)NCBI
RefSeq Acc Id: NP_001102672   ⟸   NM_001109202
- UniProtKB: A0A0G2K6F1 (UniProtKB/TrEMBL),   A6HNU7 (UniProtKB/TrEMBL),   F1M9Y7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447466   ⟸   XM_017591977
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F1 (UniProtKB/TrEMBL),   A6HNU7 (UniProtKB/TrEMBL),   F1M9Y7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073788   ⟸   ENSRNOT00000077484
Ensembl Acc Id: ENSRNOP00000057060   ⟸   ENSRNOT00000060311
RefSeq Acc Id: XP_038961602   ⟸   XM_039105674
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F1 (UniProtKB/TrEMBL),   A6HNU7 (UniProtKB/TrEMBL),   F1M9Y7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080061   ⟸   ENSRNOT00000116484
RefSeq Acc Id: XP_063140429   ⟸   XM_063284359
- Peptide Label: isoform X2
- UniProtKB: F1M9Y7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101296   ⟸   ENSRNOT00000158084
Ensembl Acc Id: ENSRNOP00000100025   ⟸   ENSRNOT00000150624

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K6F1-F1-model_v2 AlphaFold A0A0G2K6F1 1-511 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692262
Promoter ID:EPDNEW_R2787
Type:initiation region
Name:Tcp11l1_1
Description:t-complex 11 like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0394,657,465 - 94,657,525EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562313 AgrOrtholog
BioCyc Gene G2FUF-48532 BioCyc
Ensembl Genes ENSRNOG00000042576 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060311.6 UniProtKB/TrEMBL
  ENSRNOT00000077484 ENTREZGENE
  ENSRNOT00000077484.3 UniProtKB/TrEMBL
  ENSRNOT00000116484.2 UniProtKB/TrEMBL
  ENSRNOT00000150624.1 UniProtKB/TrEMBL
  ENSRNOT00000158084 ENTREZGENE
  ENSRNOT00000158084.1 UniProtKB/TrEMBL
InterPro Tcp11 UniProtKB/TrEMBL
KEGG Report rno:499846 UniProtKB/TrEMBL
NCBI Gene 499846 ENTREZGENE
PANTHER PTHR12832 UniProtKB/TrEMBL
  T-COMPLEX PROTEIN 11-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Tcp11 UniProtKB/TrEMBL
PhenoGen Tcp11l1 PhenoGen
RatGTEx ENSRNOG00000042576 RatGTEx
UniProt A0A0G2K6F1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZPS2_RAT UniProtKB/TrEMBL
  A0ABK0L885_RAT UniProtKB/TrEMBL
  A0ABK0L8J2_RAT UniProtKB/TrEMBL
  A6HNU7 ENTREZGENE, UniProtKB/TrEMBL
  F1M9Y7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Tcp11l1  t-complex 11 like 1  Tcp11l1  t-complex 11, testis-specific-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-03-01 Tcp11l1  t-complex 11, testis-specific-like 1  Tcp11l1  t-complex 11 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Tcp11l1  t-complex 11 like 1  RGD1562313_predicted  similar to RIKEN cDNA C130096D04 gene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562313_predicted  similar to RIKEN cDNA C130096D04 gene (predicted)  LOC499846  similar to RIKEN cDNA C130096D04 gene  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499846  similar to RIKEN cDNA C130096D04 gene      Symbol and Name status set to provisional 70820 PROVISIONAL