Spring1 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 12 | 43,967,146 - 43,990,083 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 12 | 43,967,146 - 43,990,213 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 12 | 38,306,227 - 38,329,175 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 12 | 38,297,837 - 38,329,138 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 12 | 39,482,497 - 39,504,471 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 12 | 40,096,303 - 40,118,279 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 12 | 39,148,328 - 39,171,231 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 12 | 43,920,564 - 43,940,798 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 12 | 43,920,564 - 43,940,798 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 12 | 45,751,100 - 45,773,812 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 12 | 39,441,308 - 39,461,715 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 12 | 39,968,335 - 39,988,645 (-) | NCBI | | Celera | | | Cytogenetic Map | 12 | q16 | NCBI | | | | |
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SPRING1 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 12 | 116,710,171 - 116,738,069 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 12 | 116,710,171 - 116,738,070 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 12 | 117,147,976 - 117,175,874 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 12 | 115,637,979 - 115,660,226 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 12 | 116,783,149 - 116,805,394 (-) | NCBI | | Celera | | | Cytogenetic Map | 12 | q24.22 | NCBI | | | | | HuRef | 12 | 114,163,358 - 114,185,593 (-) | NCBI | | HuRef | | | CHM1_1 | 12 | 117,121,244 - 117,143,491 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 12 | 116,691,314 - 116,719,214 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Spring1 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 5 | 118,383,292 - 118,401,179 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 118,383,292 - 118,404,158 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 5 | 118,245,227 - 118,263,114 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 118,245,227 - 118,266,093 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 5 | 118,695,236 - 118,713,123 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 118,506,257 - 118,524,144 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 115,340,683 - 115,358,681 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | F | NCBI | | | | | cM Map | 5 | 58.32 | NCBI | | | | |
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Spring1 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955455 | 14,331,399 - 14,349,475 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955455 | 14,331,512 - 14,349,252 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SPRING1 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 10 | 124,774,943 - 124,799,656 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 12 | 124,771,324 - 124,796,037 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 12 | 114,290,308 - 114,315,016 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 12 | 117,666,838 - 117,684,137 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 12 | 117,666,838 - 117,684,137 (-) | Ensembl | | | panPan2 | panpan1.1 |
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LOC102153143 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 7 | 13,546,304 - 13,548,726 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 7 | 13,125,333 - 13,127,747 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 7 | 13,273,273 - 13,274,360 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 26 | 13,653,829 - 13,788,152 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 7 | 13,184,728 - 13,187,142 (+) | NCBI | | UMICH_Zoey_3.1 | | | UU_Cfam_GSD_1.0 | 7 | 13,415,533 - 13,417,947 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Spring1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024405118 | 153,803,787 - 153,816,980 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936558 | 5,662,476 - 5,674,658 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936558 | 5,662,461 - 5,678,387 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SPRING1 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 14 | 35,705,943 - 35,742,739 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 35,705,901 - 36,061,831 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 37,909,997 - 38,264,173 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SPRING1 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 11 | 112,029,122 - 112,051,851 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 11 | 112,029,705 - 112,051,814 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666037 | 133,024,566 - 133,050,877 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Spring1 (Heterocephalus glaber - naked mole-rat) |
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Spring1 (Rattus rattus - black rat) |
|