Sbsn (suprabasin) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Sbsn (suprabasin) Rattus norvegicus
Analyze
Symbol: Sbsn
Name: suprabasin
RGD ID: 1562305
Description: Predicted to be located in cytoplasm. Orthologous to human SBSN (suprabasin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292793; MGC125085; RGD1562305; similar to suprabasal-specific protein suprabasin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,106,390 - 95,133,448 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,120,927 - 95,134,220 (+)EnsemblGRCr8
mRatBN7.2185,978,970 - 86,006,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,001,567 - 86,006,034 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,417,183 - 91,421,540 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,883,358 - 99,887,715 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,175,480 - 93,179,837 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,202,527 - 89,206,994 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,202,527 - 89,206,994 (+)Ensemblrn6Rnor6.0
Rnor_5.0190,357,222 - 90,361,689 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,796,224 - 85,800,672 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,373,132 - 80,377,599 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12228223   PMID:12477932   PMID:19199708   PMID:23376485   PMID:23979707  


Genomics

Comparative Map Data
Sbsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,106,390 - 95,133,448 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,120,927 - 95,134,220 (+)EnsemblGRCr8
mRatBN7.2185,978,970 - 86,006,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,001,567 - 86,006,034 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,417,183 - 91,421,540 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,883,358 - 99,887,715 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,175,480 - 93,179,837 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,202,527 - 89,206,994 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,202,527 - 89,206,994 (+)Ensemblrn6Rnor6.0
Rnor_5.0190,357,222 - 90,361,689 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,796,224 - 85,800,672 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,373,132 - 80,377,599 (+)NCBICelera
Cytogenetic Map1q21NCBI
SBSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,523,367 - 35,528,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,523,367 - 35,528,351 (-)Ensemblhg38GRCh38
GRCh371936,014,269 - 36,019,213 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,706,109 - 40,711,093 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1932,727,776 - 32,732,706 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,519,717 - 32,524,701 (-)NCBIHuRef
CHM1_11936,015,835 - 36,020,819 (-)NCBICHM1_1
T2T-CHM13v2.01938,068,100 - 38,074,890 (-)NCBIT2T-CHM13v2.0
Sbsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,432,099 - 30,455,559 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,450,896 - 30,455,559 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38730,732,674 - 30,756,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,751,471 - 30,756,134 (+)Ensemblmm10GRCm38
MGSCv37731,536,490 - 31,541,153 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36730,460,292 - 30,464,891 (+)NCBIMGSCv36mm8
Celera725,333,563 - 25,338,232 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.24NCBI
Sbsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,746,800 - 4,751,978 (-)Ensembl
ChiLan1.0NW_0049554684,746,856 - 4,751,722 (-)NCBIChiLan1.0ChiLan1.0
SBSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,536,303 - 41,541,673 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,518,154 - 43,524,742 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,470,103 - 32,475,368 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,207,284 - 41,212,122 (-)NCBIPanPan1.1PanPan1.1panPan2
SBSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,130,460 - 117,138,427 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,536,170 - 116,541,283 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01117,733,231 - 117,738,072 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,733,283 - 117,738,080 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,296,326 - 117,301,439 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,922,115 - 116,926,740 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,977,394 - 117,982,074 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sbsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,807,242 - 10,812,111 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570833,712 - 838,646 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936570833,789 - 838,637 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SBSN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,960,699 - 44,966,390 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1644,960,693 - 44,966,592 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,222,456 - 40,224,872 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SBSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,448,525 - 30,454,109 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,448,766 - 30,453,549 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660738,241,104 - 8,248,009 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sbsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,075,336 - 8,079,971 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247948,075,288 - 8,080,114 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Sbsn
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12165,261,292 - 165,264,602 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sbsn
73 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:52
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000028526
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 90 59 6 354 190 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001044231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001198590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001198591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV112367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000028526   ⟹   ENSRNOP00000028526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,128,787 - 95,134,220 (+)Ensembl
mRatBN7.2 Ensembl186,001,567 - 86,006,034 (+)Ensembl
Rnor_6.0 Ensembl189,202,527 - 89,206,994 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111530   ⟹   ENSRNOP00000084464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,128,803 - 95,133,448 (+)Ensembl
mRatBN7.2 Ensembl186,001,567 - 86,006,034 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133127   ⟹   ENSRNOP00000099167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,128,803 - 95,133,703 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136692   ⟹   ENSRNOP00000099681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,120,927 - 95,131,470 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142241   ⟹   ENSRNOP00000110524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,128,803 - 95,131,967 (+)Ensembl
RefSeq Acc Id: NM_001044231   ⟹   NP_001037696
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,128,981 - 95,133,448 (+)NCBI
mRatBN7.2186,001,567 - 86,006,034 (+)NCBI
Rnor_6.0189,202,527 - 89,206,994 (+)NCBI
Rnor_5.0190,357,222 - 90,361,689 (+)NCBI
RGSC_v3.4185,796,224 - 85,800,672 (+)RGD
Celera180,373,132 - 80,377,599 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001198590   ⟹   NP_001185519
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,128,981 - 95,133,448 (+)NCBI
mRatBN7.2186,001,567 - 86,006,034 (+)NCBI
Rnor_6.0189,202,527 - 89,206,994 (+)NCBI
Rnor_5.0190,357,222 - 90,361,689 (+)NCBI
Celera180,373,132 - 80,377,599 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001198591   ⟹   NP_001185520
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,128,981 - 95,133,448 (+)NCBI
mRatBN7.2186,001,567 - 86,006,034 (+)NCBI
Rnor_6.0189,202,527 - 89,206,994 (+)NCBI
Rnor_5.0190,357,222 - 90,361,689 (+)NCBI
Celera180,373,132 - 80,377,599 (+)NCBI
Sequence:
RefSeq Acc Id: NR_177078
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,390 - 95,133,448 (+)NCBI
mRatBN7.2185,978,970 - 86,006,034 (+)NCBI
RefSeq Acc Id: XM_039104509   ⟹   XP_038960437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,791 - 95,133,448 (+)NCBI
mRatBN7.2185,983,758 - 86,006,034 (+)NCBI
RefSeq Acc Id: XM_063283652   ⟹   XP_063139722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,845 - 95,133,448 (+)NCBI
RefSeq Acc Id: XM_063283654   ⟹   XP_063139724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,116,107 - 95,133,448 (+)NCBI
RefSeq Acc Id: XM_063283656   ⟹   XP_063139726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,845 - 95,133,448 (+)NCBI
RefSeq Acc Id: NP_001037696   ⟸   NM_001044231
- Peptide Label: isoform 2 precursor
- UniProtKB: Q32PY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185519   ⟸   NM_001198590
- Peptide Label: isoform 1 precursor
- UniProtKB: F7FEM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185520   ⟸   NM_001198591
- Peptide Label: isoform 3 precursor
- Sequence:
Ensembl Acc Id: ENSRNOP00000028526   ⟸   ENSRNOT00000028526
RefSeq Acc Id: XP_038960437   ⟸   XM_039104509
- Peptide Label: isoform X3
- UniProtKB: Q32PY8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084464   ⟸   ENSRNOT00000111530
RefSeq Acc Id: XP_063139722   ⟸   XM_063283652
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139726   ⟸   XM_063283656
- Peptide Label: isoform X2
- UniProtKB: F7FEM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139724   ⟸   XM_063283654
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000099167   ⟸   ENSRNOT00000133127
Ensembl Acc Id: ENSRNOP00000110524   ⟸   ENSRNOT00000142241
Ensembl Acc Id: ENSRNOP00000099681   ⟸   ENSRNOT00000136692

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7FEM5-F1-model_v2 AlphaFold F7FEM5 1-675 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689931
Promoter ID:EPDNEW_R456
Type:single initiation site
Name:Sbsn_1
Description:suprabasin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0189,202,521 - 89,202,581EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562305 AgrOrtholog
BioCyc Gene G2FUF-60079 BioCyc
Ensembl Genes ENSRNOG00000021015 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028526.9 UniProtKB/TrEMBL
  ENSRNOT00000111530 ENTREZGENE
  ENSRNOT00000111530.2 UniProtKB/TrEMBL
  ENSRNOT00000133127 ENTREZGENE
  ENSRNOT00000133127.1 UniProtKB/TrEMBL
  ENSRNOT00000136692.1 UniProtKB/TrEMBL
  ENSRNOT00000142241.1 UniProtKB/TrEMBL
Gene3D-CATH Helix hairpin bin UniProtKB/TrEMBL
InterPro SBSN_GxHH_rpt UniProtKB/TrEMBL
  Suprabasin UniProtKB/TrEMBL
KEGG Report rno:292793 UniProtKB/TrEMBL
NCBI Gene 292793 ENTREZGENE
PANTHER SUPRABASAL-SPECIFIC PROTEIN SUPRABASIN UniProtKB/TrEMBL
  SUPRABASIN UniProtKB/TrEMBL
Pfam SBSN_GxHH_rpt UniProtKB/TrEMBL
PhenoGen Sbsn PhenoGen
RatGTEx ENSRNOG00000021015 RatGTEx
UniProt A0A8I5ZY59_RAT UniProtKB/TrEMBL
  A0ABK0L4P5_RAT UniProtKB/TrEMBL
  A0ABK0LD08_RAT UniProtKB/TrEMBL
  A0ABK0LXV1_RAT UniProtKB/TrEMBL
  F7FEM5 ENTREZGENE, UniProtKB/TrEMBL
  Q32PY8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Sbsn  suprabasin  RGD1562305_predicted  similar to suprabasal-specific protein suprabasin (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562305_predicted  similar to suprabasal-specific protein suprabasin (predicted)  LOC292793  similar to suprabasal-specific protein suprabasin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC292793  similar to suprabasal-specific protein suprabasin      Symbol and Name status set to provisional 70820 PROVISIONAL