Entr1l3 (endosome associated trafficking regulator 1 like 3) - Rat Genome Database

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Gene: Entr1l3 (endosome associated trafficking regulator 1 like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Entr1l3
Name: endosome associated trafficking regulator 1 like 3
RGD ID: 1562289
Description: Orthologous to human ENTR1 (endosome associated trafficking regulator 1).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endosome-associated-trafficking regulator 1-like; LOC501516; RGD1562289; serologically defined colon cancer antigen 3 homolog; similar to RIKEN cDNA C330016H24
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X8,964,296 - 8,966,437 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.2X6,381,218 - 6,383,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX6,381,319 - 6,383,094 (+)EnsemblmRatBN7.2
Rnor_6.0X7,049,642 - 7,051,625 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X7,844,039 - 7,846,003 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X18,019,437 - 18,020,585 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX6,871,114 - 6,872,627 (+)NCBICelera
Cytogenetic MapXq11NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Entr1l3
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149314046933Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
5 1 10 28 35 93 55 10 25 33 20 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000061669   ⟹   ENSRNOP00000058381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl329,599,059 - 29,605,881 (-)Ensembl
mRatBN7.2 Ensembl39,200,967 - 9,207,688 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088578   ⟹   ENSRNOP00000097188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,200,972 - 9,207,679 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089705   ⟹   ENSRNOP00000068774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl329,599,064 - 29,605,771 (-)Ensembl
mRatBN7.2 Ensembl39,200,967 - 9,207,655 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102669   ⟹   ENSRNOP00000096122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl329,599,059 - 29,605,898 (-)Ensembl
mRatBN7.2 Ensembl39,200,970 - 9,207,664 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105263   ⟹   ENSRNOP00000084886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl329,599,059 - 29,605,780 (-)Ensembl
mRatBN7.2 Ensembl39,200,967 - 9,207,688 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106972   ⟹   ENSRNOP00000087265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX6,381,319 - 6,383,094 (+)Ensembl
RefSeq Acc Id: XM_576917   ⟹   XP_576917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X8,964,296 - 8,966,437 (+)NCBI
mRatBN7.2X6,381,218 - 6,383,349 (+)NCBI
Rnor_6.0X7,049,642 - 7,051,625 (+)NCBI
Rnor_5.0X7,844,039 - 7,846,003 (+)NCBI
RGSC_v3.4X18,019,437 - 18,020,585 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_576917 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_576917   ⟸   XM_576917
- Sequence:
Ensembl Acc Id: ENSRNOP00000087265   ⟸   ENSRNOT00000106972
Ensembl Acc Id: ENSRNOP00000097188   ⟸   ENSRNOT00000088578
Ensembl Acc Id: ENSRNOP00000096122   ⟸   ENSRNOT00000102669
Ensembl Acc Id: ENSRNOP00000058381   ⟸   ENSRNOT00000061669
Ensembl Acc Id: ENSRNOP00000068774   ⟸   ENSRNOT00000089705
Ensembl Acc Id: ENSRNOP00000084886   ⟸   ENSRNOT00000105263

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562289 AgrOrtholog
BioCyc Gene G2FUF-3109 BioCyc
Ensembl Genes ENSRNOG00000018876 Ensembl
  ENSRNOG00000068449 Ensembl
NCBI Gene 501516 ENTREZGENE
PhenoGen Entr1l3 PhenoGen
RatGTEx ENSRNOG00000018876 RatGTEx
  ENSRNOG00000068449 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Entr1l3  endosome associated trafficking regulator 1 like 3  RGD1562289  similar to RIKEN cDNA C330016H24  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1562289  similar to RIKEN cDNA C330016H24   RGD1562289_predicted  similar to RIKEN cDNA C330016H24 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562289_predicted  similar to RIKEN cDNA C330016H24 (predicted)  LOC501516  similar to RIKEN cDNA C330016H24  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501516  similar to RIKEN cDNA C330016H24      Symbol and Name status set to provisional 70820 PROVISIONAL