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Gene: Ccdc69 (coiled-coil domain containing 69) Rattus norvegicus

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Symbol:

Ccdc69

Name:

coiled-coil domain containing 69

RGD ID:

1562251

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in spindle midzone assembly. Predicted to be located in spindle midzone. Predicted to be active in nucleus. Predicted to colocalize with cytoplasm. Orthologous to human CCDC69 (coiled-coil domain containing 69); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

coiled-coil domain-containing protein 69; LOC497906; RGD1562251; similar to DNA segment, Chr 11, ERATO Doi 461, expressed

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC69 (coiled-coil domain containing 69)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Ccdc69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccdc69 (coiled-coil domain containing 69)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CCDC69 (coiled-coil domain containing 69)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC69 (coiled-coil domain containing 69)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccdc69 (coiled-coil domain containing 69)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccdc69 (coiled-coil domain containing 69)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc69 (coiled-coil domain containing 69)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc69 (coiled-coil domain containing 69)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc69	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc69	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,673,984 - 39,701,080 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	39,673,985 - 39,700,579 (-)	Ensembl				GRCr8
mRatBN7.2	10	39,173,282 - 39,200,358 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,173,282 - 39,199,878 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	43,860,002 - 43,886,583 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,350,075 - 43,376,657 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	38,853,773 - 38,880,365 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,392,459 - 40,419,567 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,392,460 - 40,419,054 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,231,946 - 40,257,764 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,456,241 - 40,482,835 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,510,662 - 38,537,027 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

arsenite(3-) (ISO)

belinostat (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

camptothecin (ISO)

chlordecone (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

genistein (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

indometacin (ISO)

lead diacetate (ISO)

leflunomide (ISO)

lidocaine (EXP)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Nutlin-3 (ISO)

panobinostat (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

potassium cyanide (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

spindle midzone assembly (ISO)

Cellular Component

cytoplasm (IBA)

midbody (IEA)

nucleus (IBA)

spindle (IEA)

spindle midzone (ISO)

Molecular Function

microtubule binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20962590

Genomics

Comparative Map Data

Ccdc69
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,673,984 - 39,701,080 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	39,673,985 - 39,700,579 (-)	Ensembl				GRCr8
mRatBN7.2	10	39,173,282 - 39,200,358 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,173,282 - 39,199,878 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	43,860,002 - 43,886,583 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,350,075 - 43,376,657 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	38,853,773 - 38,880,365 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,392,459 - 40,419,567 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,392,460 - 40,419,054 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,231,946 - 40,257,764 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,456,241 - 40,482,835 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,510,662 - 38,537,027 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

CCDC69
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	151,181,052 - 151,224,092 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	151,181,052 - 151,224,124 (-)	Ensembl			hg38	GRCh38
GRCh37	5	150,560,613 - 150,603,653 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	150,540,806 - 150,583,847 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	146,641,931 - 146,685,003 (-)	NCBI		Celera
Cytogenetic Map	5	q33.1	NCBI
HuRef	5	145,706,207 - 145,749,238 (-)	NCBI		HuRef
CHM1_1	5	149,993,383 - 150,036,418 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	151,719,991 - 151,763,040 (-)	NCBI		T2T-CHM13v2.0

Ccdc69
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	54,940,559 - 54,969,608 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	54,940,557 - 54,968,957 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	55,049,733 - 55,078,666 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	55,049,731 - 55,078,131 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	54,863,240 - 54,891,633 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	54,893,161 - 54,921,512 (-)	NCBI		MGSCv36	mm8
Celera	11	59,639,684 - 59,668,047 (-)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	32.13	NCBI

Ccdc69
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955408	2,471,157 - 2,498,611 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC69
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	146,412,834 - 146,456,879 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	144,552,380 - 144,596,431 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	146,608,461 - 146,651,876 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	152,609,673 - 152,652,231 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	152,530,445 - 152,652,231 (-)	Ensembl			panPan2	panpan1.1

CCDC69
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	58,034,831 - 58,071,702 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	58,033,553 - 58,069,245 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	57,851,391 - 57,888,050 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	58,473,088 - 58,509,793 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	58,473,082 - 58,507,944 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	58,290,742 - 58,327,661 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	58,389,469 - 58,426,144 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	58,893,001 - 58,929,679 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc69
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	117,056,436 - 117,098,488 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936647	4,059,178 - 4,101,257 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936647	4,059,198 - 4,101,209 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC69
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	71,778,456 - 71,821,923 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	71,778,236 - 71,821,927 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	78,011,210 - 78,053,583 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC69
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	53,738,643 - 53,781,137 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	53,740,717 - 53,781,075 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	23,933,500 - 23,976,036 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc69
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	41,092,050 - 41,122,469 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	41,087,862 - 41,123,228 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc69
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	37,479,617 - 37,505,734 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc69
219 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	370
Count of miRNA genes:	216
Interacting mature miRNAs:	246
Transcripts:	ENSRNOT00000039040
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35893263	52293000	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

RH139430

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,173,375 - 39,173,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,392,553 - 40,392,674	NCBI	Rnor6.0
Rnor_5.0	10	40,232,040 - 40,232,161	UniSTS	Rnor5.0
RGSC_v3.4	10	40,456,334 - 40,456,455	UniSTS	RGSC3.4
Celera	10	38,510,755 - 38,510,876	UniSTS
RH 3.4 Map	10	410.7	UniSTS
Cytogenetic Map	10	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	153	91	90	59	92	59	6	356	192	11	132	81	92	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC093965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039040 ⟹ ENSRNOP00000037400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	39,673,985 - 39,700,579 (-)	Ensembl
mRatBN7.2 Ensembl	10	39,173,283 - 39,199,878 (-)	Ensembl
Rnor_6.0 Ensembl	10	40,392,460 - 40,419,054 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101308 ⟹ ENSRNOP00000094112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	39,673,985 - 39,686,900 (-)	Ensembl
mRatBN7.2 Ensembl	10	39,173,282 - 39,199,878 (-)	Ensembl

RefSeq Acc Id:

NM_001109031 ⟹ NP_001102501

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,985 - 39,700,579 (-)	NCBI
mRatBN7.2	10	39,173,283 - 39,199,878 (-)	NCBI
Rnor_6.0	10	40,392,460 - 40,419,054 (-)	NCBI
Rnor_5.0	10	40,231,946 - 40,257,764 (-)	NCBI
RGSC_v3.4	10	40,456,241 - 40,482,835 (-)	RGD
Celera	10	38,510,662 - 38,537,027 (-)	RGD

Sequence:

show sequence

TAAGGCGCGCAGCCGGCGCGGCTGCAGCTCCGGGCGATTGAGAGTCACAGCCGGCAGGACGCAC
GAATCAGGATGGGCTGCAGGCACAGCCGGCACAGCCGCGGCAAGCGCGCGGAGAAGGTGGAAGA
GACACAGACAGAACTTCTGGAGACACTGGACAAAGAGGGAAGGATCCTGGAAGGAAGGCATGAG
GAGACTGGGCAAGTCCAGCAGACATCGAATGCACAGGAGAAAGATGCTCTTAGTGACTGCGTCC
TAGAGGCCAAAGCCTCATTGCAGAACACGTGTGCAATTCATGTCCCACCACAAGAGGCCAGACA
AGCCAAGATGAACAAGGTGGACGGGTCCATCCTTAGCCGACTCTATAGAAACCACATCCAGGAT
TATGGGAGCCCTGGCCCGTTCTGGGAGCAAGAGCTGGAGAGTCTGCACCATGTTATTGAGATGA
AGAATGAGCGAATTCATGAGCTCGAGAAGCAGCTCTTCCTCCTGGAGATGCTGAAAGAAAAAAA
TCTGATCTTAGCGCTGAAAAACACCACCCTGCAGCAGGAGGTTGAGGACCTACAATTCCAAGCT
AGGAACAGGTTGGCCATGTCAAGGCAGCTCCGGAAAGACCTACTTCAGGACCTCGAAAAGGAGT
CACAGAATGGCCACTGCTGCAACAGACGGAGAAGCCACTGAATATCTGAGTACTAGAGGCCAGC
ACCTCCTCCATCTTACCTCGCCCTCTGATACACTTCAAAGGCCTCTGCCCTCAGTGTAAAGGAA
GGAGCAGGGACTGGGCCTACCATGGTTCTGAGACTCACTGCTCCCTCCAAAGACTCTGTGGAAA
AGAGAGCAAAAGCCACTCCATTCTTCTCCCAGGATGGATGAGGTGGGGGGTGGGGGTGGGGAGA
GCTCCTACAAAGCTGGTGGGGAAGCTTGGGGCACCAAGACCACCCCTCAAAGTGCCTTTCCTTA
GTCGGCCCAGGGAACAAGCAGGTAGTTATCTCCGTCCCTTTGCTCTGTCCTCATGAGAGCATTC
AAGACGTCTCCCATGGCAGCTGGAGCCATTTGTACCATGGGACAAAGAGGGGCAGTCCCAATCC
CAGACCATCACCTTTGCTGACAAATCACCAACCTATCAAGTTCTTAGTGCCACACCCATAACTC
TGACTCAGAGAAAAAACGGTAAAAGACACAATCCAAGAAAAAGGAACACAGTATTGTTTTTAAT
GAGAGGGGTCTTAACACATAGCCTAATCTTGAACTCAAAGTCACTCTGCCTCAGCCTCCTGAGT
GCTGGGAACATGGGCATGTACTACCACACCCATAAGGGGTTGAATCTGCTATAGAGCTAAGCAC
TGTTACTATATTTAAGTATATTTATCTAAGGTTTTAATGTGAAAATTAATTTTTTTTTGTTAAA
ATAAAACTCTATTTTTCATGTCCTTTTC

hide sequence

RefSeq Acc Id:

XM_006246393 ⟹ XP_006246455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,984 - 39,700,724 (-)	NCBI
mRatBN7.2	10	39,173,282 - 39,199,864 (-)	NCBI
Rnor_6.0	10	40,392,459 - 40,418,993 (-)	NCBI
Rnor_5.0	10	40,231,946 - 40,257,764 (-)	NCBI

Sequence:

show sequence

CACGAATCAGGATGGGCTGCAGGCACAGCCGGCACAGCCGCGGCAAGCGCGCGGAGAAGGGTAG
CTTTTTGAAAGAATTGTGGGAGCCAATGAGAAAACACAGTGTGTGAAGATTCTGCTGCCAAGGC
TGAAGACCTGAGTTTGGTTCCCAGAGGCCAAGGGATAAGGGAAGAAAAGCCATTCCACAAGCTA
TTTGATTCCTATGTGCACACTCATACGTACACAGGTGGAAGAGACACAGACAGAACTTCTGGAG
ACACTGGACAAAGAGGGAAGGATCCTGGAAGGAAGGCATGAGGAGACTGGGCAAGTCCAGCAGA
CATCGAATGCACAGGAGAAAGATGCTCTTAGTGACTGCGTCCTAGAGGCCAAAGCCTCATTGCA
GAACACGTGTGCAATTCATGTCCCACCACAAGAGGCCAGACAAGCCAAGATGAACAAGGTGGAC
GGGTCCATCCTTAGCCGACTCTATAGAAACCACATCCAGGATTATGGGAGCCCTGGCCCGTTCT
GGGAGCAAGAGCTGGAGAGTCTGCACCATGTTATTGAGATGAAGAATGAGCGAATTCATGAGCT
CGAGAAGCAGCTCTTCCTCCTGGAGATGCTGAAAGAAAAAAATCTGATCTTAGCGCTGAAAAAC
ACCACCCTGCAGCAGGAGGTTGAGGACCTACAATTCCAAGCTAGGAACAGGTTGGCCATGTCAA
GGCAGCTCCGGAAAGACCTACTTCAGGACCTCGAAAAGGAGTCACAGAATGGCCACTGCTGCAA
CAGACGGAGAAGCCACTGAATATCTGAGTACTAGAGGCCAGCACCTCCTCCATCTTACCTCGCC
CTCTGATACACTTCAAAGGCCTCTGCCCTCAGTGTAAAGGAAGGAGCAGGGACTGGGCCTACCA
TGGTTCTGAGACTCACTGCTCCCTCCAAAGACTCTGTGGAAAAGAGAGCAAAAGCCACTCCATT
CTTCTCCCAGGATGGATGAGGTGGGGGGTGGGGGTGGGGAGAGCTCCTACAAAGCTGGTGGGGA
AGCTTGGGGCACCAAGACCACCCCTCAAAGTGCCTTTCCTTAGTCGGCCCAGGGAACAAGCAGG
TAGTTATCTCCGTCCCTTTGCTCTGTCCTCATGAGAGCATTCAAGACGTCTCCCATGGCAGCTG
GAGCCATTTGTACCATGGGACAAAGAGGGGCAGTCCCAATCCCAGACCATCACCTTTGCTGACA
AATCACCAACCTATCAAGTTCTTAGTGCCACACCCATAACTCTGACTCAGAGAAAAAACGGTAA
AAGACACAATCCAAGAAAAAGGAACACAGTATTGTTTTTAATGAGAGGGGTCTTAACACATAGC
CTAATCTTGAACTCAAAGTCACTCTGCCTCAGCCTCCTGAGTGCTGGGAACATGGGCATGTACT
ACCACACCCATAAGGGGTTGAATCTGCTATAGAGCTAAGCACTGTTACTATATTTAAGTATATT
TATCTAAGGTTTTAATGTGAAAATTAATTTTTTTTTGTTAAAATAAAACTCTATTTTTCATGTC
CTTTTCA

hide sequence

RefSeq Acc Id:

XM_006246394 ⟹ XP_006246456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,675,695 - 39,701,080 (-)	NCBI
mRatBN7.2	10	39,175,370 - 39,200,358 (-)	NCBI
Rnor_6.0	10	40,394,607 - 40,419,567 (-)	NCBI
Rnor_5.0	10	40,231,946 - 40,257,764 (-)	NCBI

Sequence:

show sequence

CCAGCCTCAGCCTCCTGAGTTCTGGGGTTATAGACACTCATCCTTAGTGCCTTCAGAGAGTAAA
AGCTCTGGAACTGGGGTTGCAGGCATCTGTGAGCCACCTGATGAGGGTGCTTGGAGTTGAACCC
TAGATTTCTGGAAGAGCAGAAAAAAACCCTTAACTGCTAAGATCTTTCTCCAACCCGTTTGCTT
TGAGTAACAGGTTACCAAGTACCCCAGCCTGGCCTCAACGCCCCCTATATGCCTCAGACTGTCC
TCGAACTTGTGATCCTTCTCCCTCCCCCTCCCCAGAACTGGGATTACAGATGTGTGCCACAACG
CCTGGTTTAATTGTTTTCGTTCTTTTCCCTCTCAGCTCTTCCTCATCAGAGGGTCCTGAGAACC
ATCTGTGGCTCCTGGGGATCTCTCCTGCCCAGGCCTCAGGTACTTCTGGTGTGGAGCGCCGCTG
GCACCTGCCCTGGCCCGGCCCCGGCTCTGCTCGGGGCCCCGCGCAGGCCCTGCTCTTCCGGCAT
TTAAGGCGCGCAGCCGGCGCGGCTGCAGCTCCGGGCGATTGAGAGTCACAGCCGGCAGGACGCA
CGAATCAGGATGGGCTGCAGGCACAGCCGGCACAGCCGCGGCAAGCGCGCGGAGAAGGTGGAAG
AGACACAGACAGAACTTCTGGAGACACTGGACAAAGAGGGAAGGATCCTGGAAGGAAGGCATGA
GGAGACTGGGCAAGTCCAGCAGACATCGAATGCACAGGAGAAAGATGCTCTTAGTGACTGCGTC
CTAGAGGCCAAAGCCTCATTGCAGAACACGTGTGCAATTCATGTCCCACCACAAGAGGCCAGAC
AAGCCAAGATGAACAAGGTGGACGGGTCCATCCTTAGCCGACTCTATAGAAACCACATCCAGGA
TTATGGGAGCCCTGGCCCGTTCTGGGAGCAAGAGCTGGAGAGTCTGCACCATGTTATTGAGATG
AAGAATGAGCGAATTCATGAGCTCGAGAAGCAGCTCTTCCTCCTGGAGATGCTGGTTGCTGCAA
CTAGAGCAGTACTGGGCGCCAGCAGCCTAGCTCCTCAGGAAGGGTGGCAGCCATCACACTGCAG
GCAGAGGCTAAGAAAGGAGGTGAGGCCCACAGGCCAGGCAGACAAAGAGGCTAGACTTAGTAAC
GGTGAACTGGGGAGCTAGGGTTCCATTTGAAGACCCAGAAATGAGGTCTCAGAACCCTGGGCCA
GCATTACTCTTAGGATCTGTCAAATGTGGATTTGGTTTGTTTGGGTTTTTATTTAGTTGGTTGG
TAGATAGATAGATAGGTAGGTAGATAGAT

hide sequence

RefSeq Acc Id:

XM_006246395 ⟹ XP_006246457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,984 - 39,701,070 (-)	NCBI
mRatBN7.2	10	39,173,282 - 39,200,344 (-)	NCBI
Rnor_6.0	10	40,392,459 - 40,419,556 (-)	NCBI
Rnor_5.0	10	40,231,946 - 40,257,764 (-)	NCBI

Sequence:

show sequence

CTCCTGAGTTCTGGGGTTATAGACACTCATCCTTAGTGCCTTCAGAGAGTAAAAGCTCTGGAAC
TGGGGTTGCAGGCATCTGTGAGCCACCTGATGAGGGTGCTTGGAGTTGAACCCTAGATTTCTGG
AAGAGCAGAAAAAAACCCTTAACTGCTAAGATCTTTCTCCAACCCGTTTGCTTTGAGTAACAGG
TTACCAAGTACCCCAGCCTGGCCTCAACGCCCCCTATATGCCTCAGACTGTCCTCGAACTTGTG
ATCCTTCTCCCTCCCCCTCCCCAGAACTGGGATTACAGATGTGTGCCACAACGCCTGGTTTAAT
TGTTTTCGTTCTTTTCCCTCTCAGCTCTTCCTCATCAGAGGGTCCTGAGAACCATCTGTGGCTC
CTGGGGATCTCTCCTGCCCAGGCCTCAGGTACTTCTGGTGTGGAGCGCCGCTGGCACCTGCCCT
GGCCCGGCCCCGGCTCTGCTCGGGGCCCCGCGCAGGCCCTGCTCTTCCGGCATTTAAGGCGCGC
AGCCGGCGCGGCTGCAGCTCCGGGCGATTGAGAGTCACAGCCGGCAGGACGCACGAATCAGGAT
GGGCTGCAGGCACAGCCGGCACAGCCGCGGCAAGCGCGCGGAGAAGGTGGAAGAGACACAGACA
GAACTTCTGGAGACACTGGACAAAGAGGGAAGGATCCTGGAAGGAAGGCATGAGGAGACTGGGC
AAGTCCAGCAGACATCGAATGCACAGGAGAAAGATGCTCTTAGTGACTGCGTCCTAGAGGCCAA
AGCCTCATTGCAGAACACGTGTGCAATTCATGTCCCACCACAAGAGGCCAGACAAGCCAAGATG
AACAAGGTGGACGGGTCCATCCTTAGCCGACTCTATAGAAACCACATCCAGGATTATGGGAGCC
CTGGCCCGTTCTGGGAGCAAGAGCTGGAGAGTCTGCACCATGTTATTGAGATGAAGAATGAGCG
AATTCATGAGCTCGAGAAGCAGCTCTTCCTCCTGGAGATGCTGGCAGCTCCGGAAAGACCTACT
TCAGGACCTCGAAAAGGAGTCACAGAATGGCCACTGCTGCAACAGACGGAGAAGCCACTGAATA
TCTGAGTACTAGAGGCCAGCACCTCCTCCATCTTACCTCGCCCTCTGATACACTTCAAAGGCCT
CTGCCCTCAGTGTAAAGGAAGGAGCAGGGACTGGGCCTACCATGGTTCTGAGACTCACTGCTCC
CTCCAAAGACTCTGTGGAAAAGAGAGCAAAAGCCACTCCATTCTTCTCCCAGGATGGATGAGGT
GGGGGGTGGGGGTGGGGAGAGCTCCTACAAAGCTGGTGGGGAAGCTTGGGGCACCAAGACCACC
CCTCAAAGTGCCTTTCCTTAGTCGGCCCAGGGAACAAGCAGGTAGTTATCTCCGTCCCTTTGCT
CTGTCCTCATGAGAGCATTCAAGACGTCTCCCATGGCAGCTGGAGCCATTTGTACCATGGGACA
AAGAGGGGCAGTCCCAATCCCAGACCATCACCTTTGCTGACAAATCACCAACCTATCAAGTTCT
TAGTGCCACACCCATAACTCTGACTCAGAGAAAAAACGGTAAAAGACACAATCCAAGAAAAAGG
AACACAGTATTGTTTTTAATGAGAGGGGTCTTAACACATAGCCTAATCTTGAACTCAAAGTCAC
TCTGCCTCAGCCTCCTGAGTGCTGGGAACATGGGCATGTACTACCACACCCATAAGGGGTTGAA
TCTGCTATAGAGCTAAGCACTGTTACTATATTTAAGTATATTTATCTAAGGTTTTAATGTGAAA
ATTAATTTTTTTTTGTTAAAATAAAACTCTATTTTTCATGTCCTTTTCA

hide sequence

RefSeq Acc Id:

XM_039086564 ⟹ XP_038942492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,984 - 39,700,708 (-)	NCBI
mRatBN7.2	10	39,173,282 - 39,199,990 (-)	NCBI

RefSeq Acc Id:

XM_063269609 ⟹ XP_063125679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,984 - 39,700,748 (-)	NCBI

RefSeq Acc Id:

XM_063269610 ⟹ XP_063125680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,984 - 39,682,586 (-)	NCBI

RefSeq Acc Id:

XM_063269611 ⟹ XP_063125681

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,984 - 39,700,701 (-)	NCBI

RefSeq Acc Id:

XR_005489904

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,673,984 - 39,700,744 (-)	NCBI
mRatBN7.2	10	39,173,282 - 39,200,053 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102501	(Get FASTA)	NCBI Sequence Viewer
	XP_006246455	(Get FASTA)	NCBI Sequence Viewer
	XP_006246456	(Get FASTA)	NCBI Sequence Viewer
	XP_006246457	(Get FASTA)	NCBI Sequence Viewer
	XP_038942492	(Get FASTA)	NCBI Sequence Viewer
	XP_063125679	(Get FASTA)	NCBI Sequence Viewer
	XP_063125680	(Get FASTA)	NCBI Sequence Viewer
	XP_063125681	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04462	(Get FASTA)	NCBI Sequence Viewer
	EDM04463	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037400
	ENSRNOP00000037400.5
	ENSRNOP00000094112
	ENSRNOP00000094112.2

RefSeq Acc Id:	NP_001102501 ⟸ NM_001109031
- UniProtKB:	D3ZTN8 (UniProtKB/TrEMBL), A6HEK7 (UniProtKB/TrEMBL), A0A8I6AK54 (UniProtKB/TrEMBL), A6HEK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCRHSRHSRGKRAEKVEETQTELLETLDKEGRILEGRHEETGQVQQTSNAQEKDALSDCVLEA KASLQNTCAIHVPPQEARQAKMNKVDGSILSRLYRNHIQDYGSPGPFWEQELESLHHVIEMKNE RIHELEKQLFLLEMLKEKNLILALKNTTLQQEVEDLQFQARNRLAMSRQLRKDLLQDLEKESQN GHCCNRRRSH hide sequence

RefSeq Acc Id:	XP_006246457 ⟸ XM_006246395
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AK54 (UniProtKB/TrEMBL), A6HEK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCRHSRHSRGKRAEKVEETQTELLETLDKEGRILEGRHEETGQVQQTSNAQEKDALSDCVLEA KASLQNTCAIHVPPQEARQAKMNKVDGSILSRLYRNHIQDYGSPGPFWEQELESLHHVIEMKNE RIHELEKQLFLLEMLAAPERPTSGPRKGVTEWPLLQQTEKPLNI hide sequence

RefSeq Acc Id:	XP_006246455 ⟸ XM_006246393
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AK54 (UniProtKB/TrEMBL), A6HEK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCTLIRTQVEETQTELLETLDKEGRILEGRHEETGQVQQTSNAQEKDALSDCVLEAKASLQNTC AIHVPPQEARQAKMNKVDGSILSRLYRNHIQDYGSPGPFWEQELESLHHVIEMKNERIHELEKQ LFLLEMLKEKNLILALKNTTLQQEVEDLQFQARNRLAMSRQLRKDLLQDLEKESQNGHCCNRRR SH hide sequence

RefSeq Acc Id:	XP_006246456 ⟸ XM_006246394
- Peptide Label:	isoform X3
- Sequence:	show sequence MGCRHSRHSRGKRAEKVEETQTELLETLDKEGRILEGRHEETGQVQQTSNAQEKDALSDCVLEA KASLQNTCAIHVPPQEARQAKMNKVDGSILSRLYRNHIQDYGSPGPFWEQELESLHHVIEMKNE RIHELEKQLFLLEMLVAATRAVLGASSLAPQEGWQPSHCRQRLRKEVRPTGQADKEARLSNGEL GS hide sequence

Ensembl Acc Id:

ENSRNOP00000037400 ⟸ ENSRNOT00000039040

RefSeq Acc Id:	XP_038942492 ⟸ XM_039086564
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000094112 ⟸ ENSRNOT00000101308

RefSeq Acc Id:	XP_063125679 ⟸ XM_063269609
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AK54 (UniProtKB/TrEMBL), A6HEK8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125681 ⟸ XM_063269611
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063125680 ⟸ XM_063269610
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTN8-F1-model_v2	AlphaFold	D3ZTN8	1-202	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697196

Promoter ID:

EPDNEW_R7721

Type:

single initiation site

Name:

Ccdc69_1

Description:

coiled-coil domain containing 69

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	40,419,029 - 40,419,089	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562251	AgrOrtholog
BioCyc Gene	G2FUF-25089	BioCyc
Ensembl Genes	ENSRNOG00000021370	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039040	ENTREZGENE
	ENSRNOT00000039040.6	UniProtKB/TrEMBL
	ENSRNOT00000101308	ENTREZGENE
	ENSRNOT00000101308.2	UniProtKB/TrEMBL
InterPro	MTUS1/CCDC69	UniProtKB/TrEMBL
KEGG Report	rno:497906	UniProtKB/TrEMBL
NCBI Gene	497906	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 69	UniProtKB/TrEMBL
	TOUCAN, ISOFORM A	UniProtKB/TrEMBL
PhenoGen	Ccdc69	PhenoGen
RatGTEx	ENSRNOG00000021370	RatGTEx
UniProt	A0A8I6AK54	ENTREZGENE, UniProtKB/TrEMBL
	A6HEK7	ENTREZGENE, UniProtKB/TrEMBL
	A6HEK8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTN8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Ccdc69	coiled-coil domain containing 69	RGD1562251_predicted	similar to DNA segment, Chr 11, ERATO Doi 461, expressed (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562251_predicted	similar to DNA segment, Chr 11, ERATO Doi 461, expressed (predicted)	LOC497906	similar to DNA segment, Chr 11, ERATO Doi 461, expressed	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC497906	similar to DNA segment, Chr 11, ERATO Doi 461, expressed			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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