Lratd2 (LRAT domain containing 2) - Rat Genome Database

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Gene: Lratd2 (LRAT domain containing 2) Rattus norvegicus
Analyze
Symbol: Lratd2
Name: LRAT domain containing 2
RGD ID: 1562236
Description: Predicted to be located in cytoplasm and plasma membrane. Orthologous to human LRATD2 (LRAT domain containing 2); INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: Fam84b; family with sequence similarity 84, member B; LOC315019; RGD1562236; similar to breast cancer membrane protein 101
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8794,270,753 - 94,276,445 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl794,073,513 - 94,277,046 (-)EnsemblGRCr8
mRatBN7.2792,376,713 - 92,387,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl792,362,194 - 92,388,189 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx794,221,841 - 94,227,533 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0796,423,007 - 96,428,699 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0796,311,303 - 96,316,995 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07101,138,188 - 101,142,123 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7101,139,376 - 101,140,308 (-)Ensemblrn6Rnor6.0
Rnor_5.07101,706,470 - 101,710,643 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4797,686,396 - 97,688,774 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera789,099,897 - 89,102,093 (-)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (EXP)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
DDT  (EXP)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
Methylazoxymethanol acetate  (EXP)
N-nitrosodiethylamine  (ISO)
p-tert-Amylphenol  (EXP)
paracetamol  (EXP)
PCB138  (EXP)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trametinib  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477722   PMID:25468996  


Genomics

Comparative Map Data
Lratd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8794,270,753 - 94,276,445 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl794,073,513 - 94,277,046 (-)EnsemblGRCr8
mRatBN7.2792,376,713 - 92,387,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl792,362,194 - 92,388,189 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx794,221,841 - 94,227,533 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0796,423,007 - 96,428,699 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0796,311,303 - 96,316,995 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07101,138,188 - 101,142,123 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7101,139,376 - 101,140,308 (-)Ensemblrn6Rnor6.0
Rnor_5.07101,706,470 - 101,710,643 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4797,686,396 - 97,688,774 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera789,099,897 - 89,102,093 (-)NCBICelera
Cytogenetic Map7q33NCBI
LRATD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388126,552,443 - 126,558,478 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8126,552,443 - 126,558,478 (-)Ensemblhg38GRCh38
GRCh378127,564,688 - 127,570,723 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368127,633,869 - 127,639,648 (-)NCBIBuild 36Build 36hg18NCBI36
Celera8123,744,691 - 123,750,470 (-)NCBICelera
Cytogenetic Map8q24.21NCBI
HuRef8122,881,757 - 122,887,785 (-)NCBIHuRef
CHM1_18127,604,964 - 127,610,992 (-)NCBICHM1_1
T2T-CHM13v2.08127,679,604 - 127,685,649 (-)NCBIT2T-CHM13v2.0
Lratd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391560,690,845 - 60,697,954 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1560,690,843 - 60,725,627 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381560,818,996 - 60,826,105 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1560,818,994 - 60,853,778 (-)Ensemblmm10GRCm38
MGSCv371560,650,551 - 60,656,635 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361560,648,999 - 60,652,116 (-)NCBIMGSCv36mm8
Celera1562,334,714 - 62,340,798 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.7NCBI
Lratd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554611,626,560 - 1,627,495 (-)Ensembl
ChiLan1.0NW_0049554611,623,114 - 1,627,515 (-)NCBIChiLan1.0ChiLan1.0
LRATD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27143,955,114 - 143,960,740 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18119,465,423 - 119,471,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08123,216,937 - 123,222,960 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18125,965,364 - 125,971,383 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8125,969,376 - 125,970,308 (-)EnsemblpanPan2panpan1.1
LRATD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11324,213,085 - 24,217,588 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1324,185,118 - 24,191,368 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01324,558,048 - 24,564,352 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1324,558,401 - 24,562,940 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11324,280,287 - 24,286,530 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01324,385,481 - 24,391,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01324,637,006 - 24,643,286 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lratd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530314,006,407 - 14,130,300 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647021,440,008 - 21,444,454 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647021,439,925 - 21,445,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRATD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl413,445,309 - 13,451,322 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1413,445,283 - 13,451,329 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2413,883,537 - 13,887,194 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRATD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18121,130,097 - 121,136,257 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8121,134,166 - 121,135,098 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603919,022,821 - 19,028,901 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lratd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473528,826,523 - 28,831,317 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473528,826,119 - 28,831,317 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lratd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11237,720,432 - 237,724,283 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lratd2
43 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:92
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000006279
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78211124596700643Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78211124595485241Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
UniSTS:237304  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2792,386,380 - 92,386,588 (+)MAPPERmRatBN7.2
Rnor_6.07101,140,745 - 101,140,952NCBIRnor6.0
Rnor_5.07101,709,228 - 101,709,435UniSTSRnor5.0
RGSC_v3.4797,688,172 - 97,688,379UniSTSRGSC3.4
Celera789,101,481 - 89,101,680UniSTS
Cytogenetic Map7q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006279   ⟹   ENSRNOP00000006279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,242,407 - 94,276,608 (-)Ensembl
mRatBN7.2 Ensembl792,362,194 - 92,388,189 (-)Ensembl
Rnor_6.0 Ensembl7101,139,376 - 101,140,308 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114006   ⟹   ENSRNOP00000086261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,270,549 - 94,277,046 (-)Ensembl
mRatBN7.2 Ensembl792,381,159 - 92,388,189 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000123140   ⟹   ENSRNOP00000111839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,225,531 - 94,276,616 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130875   ⟹   ENSRNOP00000105723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,274,482 - 94,275,667 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146008   ⟹   ENSRNOP00000102759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,252,190 - 94,276,734 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146368   ⟹   ENSRNOP00000098996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,258,827 - 94,276,439 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153970   ⟹   ENSRNOP00000105326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,270,972 - 94,276,429 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160035   ⟹   ENSRNOP00000103717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,271,693 - 94,275,440 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164924   ⟹   ENSRNOP00000108189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl794,073,513 - 94,276,429 (-)Ensembl
RefSeq Acc Id: NM_001398722   ⟹   NP_001385651
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8794,270,753 - 94,276,445 (-)NCBI
mRatBN7.2792,381,353 - 92,387,045 (-)NCBI
Ensembl Acc Id: ENSRNOP00000006279   ⟸   ENSRNOT00000006279
Ensembl Acc Id: ENSRNOP00000086261   ⟸   ENSRNOT00000114006
RefSeq Acc Id: NP_001385651   ⟸   NM_001398722
- UniProtKB: D3ZV96 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111839   ⟸   ENSRNOT00000123140
Ensembl Acc Id: ENSRNOP00000105326   ⟸   ENSRNOT00000153970
Ensembl Acc Id: ENSRNOP00000108189   ⟸   ENSRNOT00000164924
Ensembl Acc Id: ENSRNOP00000098996   ⟸   ENSRNOT00000146368
Ensembl Acc Id: ENSRNOP00000102759   ⟸   ENSRNOT00000146008
Ensembl Acc Id: ENSRNOP00000103717   ⟸   ENSRNOT00000160035
Ensembl Acc Id: ENSRNOP00000105723   ⟸   ENSRNOT00000130875
Protein Domains
LRAT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZV96-F1-model_v2 AlphaFold D3ZV96 1-310 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562236 AgrOrtholog
BioCyc Gene G2FUF-33247 BioCyc
Ensembl Genes ENSRNOG00000004744 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006279.7 UniProtKB/TrEMBL
  ENSRNOT00000114006.2 UniProtKB/TrEMBL
  ENSRNOT00000123140.1 UniProtKB/TrEMBL
  ENSRNOT00000130875.1 UniProtKB/TrEMBL
  ENSRNOT00000146008.1 UniProtKB/TrEMBL
  ENSRNOT00000146368.1 UniProtKB/TrEMBL
  ENSRNOT00000153970.1 UniProtKB/TrEMBL
  ENSRNOT00000160035 ENTREZGENE
  ENSRNOT00000160035.1 UniProtKB/TrEMBL
  ENSRNOT00000164924.1 UniProtKB/TrEMBL
Gene3D-CATH endopeptidase domain like (from Nostoc punctiforme) UniProtKB/TrEMBL
InterPro LRAT_dom UniProtKB/TrEMBL
  LRATD1_LRATD2 UniProtKB/TrEMBL
NCBI Gene Lratd2 ENTREZGENE
PANTHER PTHR46341 UniProtKB/TrEMBL
  PTHR46341:SF2 UniProtKB/TrEMBL
Pfam LRAT UniProtKB/TrEMBL
PhenoGen Lratd2 PhenoGen
PROSITE LRAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004744 RatGTEx
UniProt A0ABK0LJF2_RAT UniProtKB/TrEMBL
  D3ZV96 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Lratd2  LRAT domain containing 2  Fam84b  family with sequence similarity 84, member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-13 Fam84b  family with sequence similarity 84, member B  RGD1562236  similar to breast cancer membrane protein 101   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562236  similar to breast cancer membrane protein 101   RGD1562236_predicted  similar to breast cancer membrane protein 101 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562236_predicted  similar to breast cancer membrane protein 101 (predicted)  LOC315019  similar to breast cancer membrane protein 101  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC315019  similar to breast cancer membrane protein 101      Symbol and Name status set to provisional 70820 PROVISIONAL