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Gene: Ccdc14 (coiled-coil domain containing 14) Rattus norvegicus

Analyze

Symbol:

Ccdc14

Name:

coiled-coil domain containing 14

RGD ID:

1562189

Description:

Predicted to be involved in protein localization to centrosome. Predicted to be located in centrosome. Predicted to be active in centriolar satellite. Orthologous to human CCDC14 (coiled-coil domain containing 14); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain-containing protein 14; LOC288054; RGD1562189; similar to CCDC14 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	79,557,267 - 79,593,128 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	79,557,274 - 79,593,285 (-)	Ensembl				GRCr8
mRatBN7.2	11	66,052,063 - 66,087,915 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	66,052,620 - 66,087,956 (-)	Ensembl				mRatBN7.2
Rnor_6.0	11	69,281,000 - 69,316,897 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	69,281,554 - 69,316,848 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	72,371,494 - 72,407,318 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	67,872,420 - 67,905,568 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	65,506,401 - 65,542,295 (-)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

calcitriol (ISO)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

ouabain (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein localization to centrosome (IBA,ISO)

substantia nigra development (ISO)

Cellular Component

centriolar satellite (IBA,IEA,ISO)

centrosome (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21399614	PMID:22926577	PMID:26297806

Genomics

Comparative Map Data

Ccdc14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	79,557,267 - 79,593,128 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	79,557,274 - 79,593,285 (-)	Ensembl				GRCr8
mRatBN7.2	11	66,052,063 - 66,087,915 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	66,052,620 - 66,087,956 (-)	Ensembl				mRatBN7.2
Rnor_6.0	11	69,281,000 - 69,316,897 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	69,281,554 - 69,316,848 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	72,371,494 - 72,407,318 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	67,872,420 - 67,905,568 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	65,506,401 - 65,542,295 (-)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

CCDC14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	123,885,176 - 123,961,229 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	123,897,305 - 123,961,435 (-)	Ensembl			hg38	GRCh38
GRCh37	3	123,632,269 - 123,680,076 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	125,115,257 - 125,158,620 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	125,115,257 - 125,158,620	NCBI
Celera	3	122,039,702 - 122,087,793 (-)	NCBI		Celera
Cytogenetic Map	3	q21.1	NCBI
HuRef	3	121,005,827 - 121,054,097 (-)	NCBI		HuRef
CHM1_1	3	123,595,278 - 123,643,264 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	126,611,315 - 126,687,354 (-)	NCBI		T2T-CHM13v2.0

Ccdc14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	34,510,940 - 34,545,574 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	34,510,986 - 34,545,572 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	34,690,557 - 34,725,204 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	34,690,616 - 34,725,202 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	34,690,702 - 34,725,280 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	34,610,457 - 34,631,163 (+)	NCBI		MGSCv36	mm8
Celera	16	35,157,616 - 35,192,194 (+)	NCBI		Celera
Cytogenetic Map	16	B3	NCBI
cM Map	16	24.46	NCBI

Ccdc14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	23,042,648 - 23,095,151 (-)	Ensembl
ChiLan1.0	NW_004955427	23,043,001 - 23,095,201 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	121,875,431 - 121,923,161 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	121,880,207 - 121,927,911 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	121,018,879 - 121,066,563 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	127,918,294 - 127,965,906 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	127,918,294 - 127,965,906 (-)	Ensembl			panPan2	panpan1.1

CCDC14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	26,958,752 - 27,009,159 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	26,959,430 - 27,009,436 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	26,980,339 - 27,031,888 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	27,192,107 - 27,243,694 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	27,191,567 - 27,243,799 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	26,988,028 - 27,039,513 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	27,032,247 - 27,083,826 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	27,644,852 - 27,701,025 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	127,365,499 - 127,426,632 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936725	1,273,946 - 1,331,109 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936725	1,273,984 - 1,331,096 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	136,438,967 - 136,486,496 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	136,439,015 - 136,502,604 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	145,971,225 - 146,005,171 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC14
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	56,889,424 - 56,939,915 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	109,404,098 - 109,459,149 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc14
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624912	2,269,829 - 2,317,154 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624912	2,270,467 - 2,316,998 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc14
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	19,470,240 - 19,504,658 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc14
377 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	108
Interacting mature miRNAs:	118
Transcripts:	ENSRNOT00000033420
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	46443168	91443168	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
2298551	Neuinf10	Neuroinflammation QTL 10	3.7		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	11	58931822	92356038	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Markers in Region

D11Mco2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	79,568,892 - 79,569,064 (+)	Marker Load Pipeline
mRatBN7.2	11	66,063,688 - 66,063,860 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	69,292,628 - 69,292,797	NCBI	Rnor6.0
Rnor_5.0	11	72,383,122 - 72,383,291	UniSTS	Rnor5.0
RGSC_v3.4	11	67,881,377 - 67,881,547	RGD	RGSC3.4
RGSC_v3.4	11	67,881,378 - 67,881,547	UniSTS	RGSC3.4
Celera	11	65,518,029 - 65,518,202	UniSTS
RGSC_v3.1	11	67,938,966 - 67,939,136	RGD
Cytogenetic Map	11	q22	UniSTS

BQ208299

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	66,088,099 - 66,088,256 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	69,317,034 - 69,317,190	NCBI	Rnor6.0
Rnor_5.0	11	72,407,528 - 72,407,684	UniSTS	Rnor5.0
RGSC_v3.4	11	67,905,784 - 67,905,940	UniSTS	RGSC3.4
Celera	11	65,542,432 - 65,542,588	UniSTS
RH 3.4 Map	11	425.5	UniSTS
Cytogenetic Map	11	q22	UniSTS

BE112622

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	66,082,102 - 66,082,283 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	69,311,037 - 69,311,217	NCBI	Rnor6.0
Rnor_5.0	11	72,401,531 - 72,401,711	UniSTS	Rnor5.0
RGSC_v3.4	11	67,899,787 - 67,899,967	UniSTS	RGSC3.4
Celera	11	65,536,435 - 65,536,615	UniSTS
RH 3.4 Map	11	408.3	UniSTS
Cytogenetic Map	11	q22	UniSTS

BF406431

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	66,054,283 - 66,054,503 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	69,283,221 - 69,283,440	NCBI	Rnor6.0
Rnor_5.0	11	72,373,715 - 72,373,934	UniSTS	Rnor5.0
RGSC_v3.4	11	67,871,971 - 67,872,190	UniSTS	RGSC3.4
Celera	11	65,508,622 - 65,508,841	UniSTS
RH 3.4 Map	11	407.3	UniSTS
Cytogenetic Map	11	q22	UniSTS

RH141893

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	66,071,892 - 66,072,089 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	69,300,830 - 69,301,026	NCBI	Rnor6.0
Rnor_5.0	11	72,391,324 - 72,391,520	UniSTS	Rnor5.0
RGSC_v3.4	11	67,889,580 - 67,889,776	UniSTS	RGSC3.4
Celera	11	65,526,235 - 65,526,431	UniSTS
Cytogenetic Map	11	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	90	59	6	354	190	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002724722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033420 ⟹ ENSRNOP00000031286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	79,557,274 - 79,593,285 (-)	Ensembl
mRatBN7.2 Ensembl	11	66,052,620 - 66,087,956 (-)	Ensembl
Rnor_6.0 Ensembl	11	69,281,554 - 69,316,848 (-)	Ensembl

RefSeq Acc Id:

NM_001427244 ⟹ NP_001414173

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	79,557,267 - 79,593,034 (-)	NCBI

RefSeq Acc Id:

XM_008768771 ⟹ XP_008766993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	79,557,267 - 79,592,800 (-)	NCBI
mRatBN7.2	11	66,052,063 - 66,087,704 (-)	NCBI
Rnor_6.0	11	69,281,000 - 69,316,732 (-)	NCBI

Sequence:

show sequence

TTCTTTTTTTCTCAAGTATTCGTTTCCCTACGTCTGGGCTCTTCTGAGGCTGAGAGAAATGGTC
AGGTCTGGATCTCGACCGGGCCAGGTGAGGGCTGCGGACCTGATGAGTCCACTGTGGGGACGAG
AGGTGGCGAGAGGCGAGGGGGATTTAGGAAGGAGCTGGAAAAAGCAAAAACAGTAACGGCAGCG
CGTCCGAAGTGTTGAGGACGTCTCTAGATGAATGCTATATCCAAGGCATCCGTGCCAGTCTTCA
GAGCGCAGAATTTGGTGTCAGGCCCTGGGTTCGAAGCCCAGCCTTTATCACCAGTGCAATGACT
TCTCTTAGCTTTGGTTAATCCTCGCCCCAGATTCAACTTCTCGGCGCTTCCACCGGTGCTTCTA
TTAACTGATCTTCTGTCTCTCTTGTTGAAGTCTCCCAGTGATACCTTCAGGAAGGCAACCCGGA
TCGAAGTTACCAAATGGAAAGAAAGGGACCCACGTGAGAAAAGTAGCACATTTTAACGTAGATC
CTGCCTGTCCTGCTTATTCTGATTCAGAAAGTCAGTATCATCAGAAAATAAGAGATGGATGCCT
AATGAAACTTCTACTGGAAGTGACATAGCGCAGCATTGGTCAGTACAAGATCATTACAGAATGT
ACTCACCGATAATATACCAAGCCCTCTGTGAGCATGTGCAGACTCAAATGTCACTGATGAATAG
CTTCGCTTCAAAACATGGCCCCAATGGAAGGCCTGCTGTGTGCCATACTGGGTCTAATTCAGAC
TCTCAGGCAATGTCACATTCTGGTTTTGGCTGGTCTTCCGCTTCGGTCTGGCCCCCTCAGCAGC
CATCCTGCCATCTAACAGTCCACTCTGAAGTTCAGACTGATGATGATAACCAGTTTGACTCACA
GGGTCAGACAACCCCTGTGCGGCACCGTGATGCTCCCAGGACTTTATCCAGCATCCATCCTGGA
GTTGCACATGGCCCTCCCCACTCTGATGGTGCCGCTGCTTCAAAGATTCAGCAGCTGAATCTTG
GGAGTTGGGTTCTGCCACAACAGAGAGCTCCTAAGGAAGCAGAGCTACCGAAGCGTTTCCAAAC
ACACGTGTCTCTGTTTCCAGCTCATGGAAAAGACGCTCTCTCGGACAGTCAGGCACACCCAAGT
CCCTCTCACTTACCGCCAGTCTTCTTGGCCACTAATGAAGAGAAATGTGCCAGAGAACAAATTG
GAGAGGCCACAAATGAAGGAAAGTATTTAAGCATCCATGAGCAAGATGCAAAGCTCGCCAAGAA
TGTGCAGCAGGCAGAAAACGTGAGCCAGACTGCTGAGAAAGTCAGAATTGCCAAGTGCTTGCTG
GGAGAGCTCAAGGCCCTGACCGAAGAACAAGAGGACTCAGAAGTTCAGAGATTGCTAACAGAAG
TAGAGGCGTGCATATCTGGACTTTCAGCAGTGAGTGGCCACATAAATGTGGAAGTTGAAATAGC
CCTGGCCCTGCAGCCGTTGAGAAGTGAGAACGCTCAGTTGCGGAGGCAACTGAGAATTTTGAAT
CAGCGCCTCCGAGAACAAGAGAAGAGTACAGAGACACCTGCTAACCTCAAATTGTTTTCCCTTC
GGTCGCTGTCACTGCAGAATCAGCTGCAGGAGTCGCTGAAGAGCCAGGAGTTGCTACAGAGTAA
AAACGAAGAGCTCCTAAAAGTGATAGAAGACCAGCGAGAGGAAAACAGAAGGTTCTCCACTTTG
TTTAAAGACGAAGAGCAAGCCCTGCTTCACAGCAGACAGCAGTTTGACATGGAGATGACCAGGG
TGAAGATGGAGTTGGAGGAAGCCTTGGCCAATGAGAAGAACTCTCGGTTTAAGCTCGAGACTGC
AGAAAAGGAAAATCAGATACTGGGAATAACTCTCCGCCAGCGGGATGCTGAGGTTGCCCGCCTT
AGGGAACTAACCAGAACTTTACAGAACAGCATGAGGAAGCTGCTCTCAGATCTCCATGTGGACA
CTGCCCGCTGCAAGATGGGGAACAGCCTCACCAGATCACTTCTGAATGTCTATGATCAACAATT
TCAACGGGACCCAGCCCCTCCTCACATCTCCATAATGAGCTACCTCAATAAATTAGAAACAAAT
CAGAGCTTTATACAGTCAGAACTGCCTAATAATGAGGAAACCCCCGAGTCAGACAGTCTCTGTG
AAAATGTGCTGCCCTCACAAAGACCTCCTCACAGTGACGCTAGGGCAGTGGATGGGGGCCCTGC
CCCTGGAACTGTCTCTGCTGCTTTGGTGGAGGATTCTGACACAGACTGTGAAGCCGTCACTGTA
GTAGAAGATGGGTGTGACGTGGACAGTACATTTTATATTCCCTTTGCAAGAAGCACTTCTAAAA
AGCACTCGCCACCTTCTAAGAGACTGTCCCCCCAGGCGAAGGTGAGCGCTGCTGCCAGCGCCGG
TGCCTGTGCCTCCAAAAAAGAAAGTAAACCGTGTGCACCCGCAGTTTGTCCCTCACGAGACAAA
GCGGAAGATGCACCTGGAAATCTTTCTGGCACATACGACACAGAGGACGTGCAGCTCCTCAGGA
AAATCAGAGAAGCACTTGGTAAGATCCCTGCTGCTGCTGGGCACCCCAAGGAACAGGCCACCCA
TCGTGGCCCACCAGCTCCGCTCAGCCCTGGCGTTCCTGTGAAGGGCAACATTGTCGCTGACAGC
AGCTTTCTCCATTCTGACTTGATGTCAGACTGGAGCATCTCCTCGTTTTCAACATTCACGTCTC
GTGATGAGCAGGACTTCAGAAATGGCCTGGCAGCGTTAGATGCCAATATTGCTCGGCTCCAGAA
GTCCTTGAAGACTGGCCTTCTGGAGAAATGATTCTGGGAGGAAACTGATTGAGTCCTTTTTTTA
AAGTACAGAACTTGACTACATTCATAGTATATTTTGGGTTTTCTTAGAGAGAACATTTTATATT
ATTAATTATGTATGAAATAATAAATGGAGTAAATTTACTGTTAAGAATATTTTAACACCTGAAA
CTTACAAAAACAAATTTTCTTGAAACCAACAGTCTGGGAGAAGAAAGCCGTGGATCAGAAAGTA
TTGATTTCAAGGCGCTTTACTTGACAGCTTCGGCTTCACAGAGAATTCTTCACTGTGCAATGGC
TGGGTCGGCGGTGCAGCCACCGAGCATCTCTGTCTGGAAGGAGAGTACGAAAGGATCAGTACTG
TTTAAATGTTCCTCTCTGCAGTGGAATGTTGGTTTCATGGTAGTGTTCTTGTGTATGGGAATAC
TCTGTGTTACGAGCTAGTGCTGCCAATGACATGCGCTAACGTTTCAGAGAGAGAGAAGAGGCAG
GTGCACCCACCTCACACAAAGCATTGATTTGTCCAGAGAAATACCGATGATTGATTAATACATA
GTTTTTAAACCTTGGGCATTTTATTTATATTTGTCCTGAATGCATGTTTTAAGACCTTTAAAAA
ATAAAGTCAGACTGATAAGGTAATGCTAAATAACCAAGTTTTACCTTAGTAATTTTGTTTTTTA
GTAAGAATTATTGGGTTTTCCTTAATGTCTTTGGAAATGATGGAGTTTTGCAAATCTCAGCACT
GGTGGTAATTCTGCCTTTCTGACCCAGTCTCCTCCATGGTTTAGCTGAGTGTGCTGCTCTGTGA
TTAACATGAACCATGTTGCACCAGCAGTTCTCACCCACCTGCTGTCACCTCTTTCTGTGTAAAC
ACAAATTAACTCTTAGACTCTAAGTCCCGCGCCATTAGTAACTTTTGGTACATGTTACCTGCCT
GGCACAGTTGAATTTGGTTCTTGGAAAGCATCTGGCAATCGAGTAGTCTGCTGGTTTCAAATTT
TCTCCTGCTTCTACAACCTCTGAAGGACCCTGCTGGACTACTTAACATATCCTGACTTTATGGG
GAGGGTTTTTTGTTTGTTTGCTTTTTGTTTGTTTGTTTTAGGTCTAAATGTAAAATGAATTATA
AACTATTTTAAAGACTTGCTCATTAACATTTTCAATTTACTTCCTTCTAGTATTCATAAATGAA
TTGTTTACTTATTTTGAGATATCAGGTCACTCTTTCCATTTTCGTTCAGAAGCACAAACTCATA
AAGAAGAAAACCGGGTCGTCTAAACAAGAACTTGTATAGAAGCTAATCTTATAGAGGAATTTTC
TCAGTTCAGATTCCTACTTCCCGGCCAGGTGTGGTAATACACACTTTAATTCCAGTATGCAGGA
GGCAGAGGCAGGCAGATCTCTGAGCTCGAAGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACTG
CCAGGGCCATACAGAGAAATCCTATTTAAAAAACAAAACAAAACAAAACAAAACAAAACTGGGC
AAATTCCCTCTTCCCAGATAGGTCTGTTTATGCTACATTGACAAAACTACCCAGTATCCTGATC
TAGTCTGCTACCAAGGGGGTCATAAGAACCCTGATGCATAGCTGGCCGGTCAGTTGTGGGCTTG
TGACTAACATGTGAGGCAAGTGTCAGTCTGTTGGCACTGAGACCACACCTGTTTGACTCTACCT
TTCAGGGTGACCGTGTCTTAAGGGACTTGGATTGGTGTTTCTGCACAACCAGTTGGTTGCTGGT
GAGGTGAAATCCTAGTGCATCCTGGTATCATAGAAATGAAGTGTTGCCAACATAATTCTTCCTG
TATCTTCAGAATACCACATTAAAAAGTCTTAGGAATTTACTTAGGATTATTTTTTCATTAGTGT
GTACACATAAGTGTGTGGGCATGGATTTACCGTGGTGCATATCTGTAGGTCAGAGGACAACTCT
TGGGGGTCAGTCTCTCCTACCCCCACATTTGCTTGTGTTTTTGCGTGACCGTTGATATGGGAGT
TTCTGCCTCCAGGTTCCAGCCTTGAGTTCCTGCCCTGACTTCCCTCGGTGATAAGTGTGCCCTG
AGAGTTGTAAGATGAAATAAATCCTTTCCTCCCAAGATGCCTTTGGTCTTGGTGTTTTATCACA
GTAGAAAAGTAACTAAGTTTGCTAGTGCAGCTCACAGAACTCAAGAAAACATTTACGGTTTTGT
TTTTTAAGGATATAAACAGCCAGAAGAGATTGATAGGCCAATGCCTGGAAAAGATGCTACCTAC
CTACAGTCTCTGTCCTCACCGAACTGGGCTCTTCTGTCCTCTAGGTGTATACGGATTTGTTCTT
GTTCAGCTCCTGTCAAGTCACCTACTCTAGCTGCCTAAAAGTTCTCTCTACCCTGGCATCACAA
TTGAATCATAGACAGCTAGGTATGTCAGTGGTTCTCTGCCTTCCTGATGTTGTGGCCCTTTGAT
ATAATTCCTTGTGTTGTGGTGACCCCAACCATAAAATTATTTTTATTGCTGTTTCATAAATGTA
ATTTTGCTATTGTTATAAATTGTGAGTATTCATGTTTTCTAATGATCTGTGGGGACTCCTGTGA
AAGAGTCAGTCAACTCCCAAAGGGGTTTCGACCCAAAGTTTGAGAACTGCTGATGTAAATAAAT
GGTTGGACAAAAA

hide sequence

RefSeq Acc Id:

XM_039088916 ⟹ XP_038944844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	79,557,267 - 79,592,799 (-)	NCBI
mRatBN7.2	11	66,052,063 - 66,087,704 (-)	NCBI

RefSeq Acc Id:

XM_039088917 ⟹ XP_038944845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	79,557,267 - 79,592,800 (-)	NCBI
mRatBN7.2	11	66,052,063 - 66,087,704 (-)	NCBI

RefSeq Acc Id:

XM_039088918 ⟹ XP_038944846

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	79,562,000 - 79,593,127 (-)	NCBI
mRatBN7.2	11	66,056,800 - 66,087,915 (-)	NCBI

RefSeq Acc Id:

XM_039088919 ⟹ XP_038944847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	79,567,500 - 79,593,128 (-)	NCBI
mRatBN7.2	11	66,062,297 - 66,087,915 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414173	(Get FASTA)	NCBI Sequence Viewer
	XP_008766993	(Get FASTA)	NCBI Sequence Viewer
	XP_038944844	(Get FASTA)	NCBI Sequence Viewer
	XP_038944845	(Get FASTA)	NCBI Sequence Viewer
	XP_038944846	(Get FASTA)	NCBI Sequence Viewer
	XP_038944847	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11335	(Get FASTA)	NCBI Sequence Viewer
	EDM11336	(Get FASTA)	NCBI Sequence Viewer
	EDM11337	(Get FASTA)	NCBI Sequence Viewer
	EDM11338	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000031286
	ENSRNOP00000031286.6

RefSeq Acc Id:	XP_008766993 ⟸ XM_008768771
- Peptide Label:	isoform X1
- UniProtKB:	A6IRI2 (UniProtKB/TrEMBL), D3ZBB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPNETSTGSDIAQHWSVQDHYRMYSPIIYQALCEHVQTQMSLMNSFASKHGPNGRPAVCHTGSN SDSQAMSHSGFGWSSASVWPPQQPSCHLTVHSEVQTDDDNQFDSQGQTTPVRHRDAPRTLSSIH PGVAHGPPHSDGAAASKIQQLNLGSWVLPQQRAPKEAELPKRFQTHVSLFPAHGKDALSDSQAH PSPSHLPPVFLATNEEKCAREQIGEATNEGKYLSIHEQDAKLAKNVQQAENVSQTAEKVRIAKC LLGELKALTEEQEDSEVQRLLTEVEACISGLSAVSGHINVEVEIALALQPLRSENAQLRRQLRI LNQRLREQEKSTETPANLKLFSLRSLSLQNQLQESLKSQELLQSKNEELLKVIEDQREENRRFS TLFKDEEQALLHSRQQFDMEMTRVKMELEEALANEKNSRFKLETAEKENQILGITLRQRDAEVA RLRELTRTLQNSMRKLLSDLHVDTARCKMGNSLTRSLLNVYDQQFQRDPAPPHISIMSYLNKLE TNQSFIQSELPNNEETPESDSLCENVLPSQRPPHSDARAVDGGPAPGTVSAALVEDSDTDCEAV TVVEDGCDVDSTFYIPFARSTSKKHSPPSKRLSPQAKVSAAASAGACASKKESKPCAPAVCPSR DKAEDAPGNLSGTYDTEDVQLLRKIREALGKIPAAAGHPKEQATHRGPPAPLSPGVPVKGNIVA DSSFLHSDLMSDWSISSFSTFTSRDEQDFRNGLAALDANIARLQKSLKTGLLEK hide sequence

Ensembl Acc Id:

ENSRNOP00000031286 ⟸ ENSRNOT00000033420

RefSeq Acc Id:	XP_038944844 ⟸ XM_039088916
- Peptide Label:	isoform X1
- UniProtKB:	A6IRI2 (UniProtKB/TrEMBL), D3ZBB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944845 ⟸ XM_039088917
- Peptide Label:	isoform X1
- UniProtKB:	A6IRI2 (UniProtKB/TrEMBL), D3ZBB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944846 ⟸ XM_039088918
- Peptide Label:	isoform X2
- UniProtKB:	A6IRI5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944847 ⟸ XM_039088919
- Peptide Label:	isoform X3
- UniProtKB:	A6IRI5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414173 ⟸ NM_001427244
- UniProtKB:	A6IRI2 (UniProtKB/TrEMBL), D3ZBB5 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZBB5-F1-model_v2	AlphaFold	D3ZBB5	1-929	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698198

Promoter ID:

EPDNEW_R8719

Type:

multiple initiation site

Name:

Ccdc14_1

Description:

coiled-coil domain containing 14

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	69,316,761 - 69,316,821	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562189	AgrOrtholog
BioCyc Gene	G2FUF-21155	BioCyc
Ensembl Genes	ENSRNOG00000021469	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033420	ENTREZGENE
	ENSRNOT00000033420.8	UniProtKB/TrEMBL
InterPro	CCDC14	UniProtKB/TrEMBL
NCBI Gene	288054	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 14	UniProtKB/TrEMBL
	PTHR22367	UniProtKB/TrEMBL
Pfam	CCDC14	UniProtKB/TrEMBL
PhenoGen	Ccdc14	PhenoGen
RatGTEx	ENSRNOG00000021469	RatGTEx
UniProt	A6IRI2	ENTREZGENE, UniProtKB/TrEMBL
	A6IRI5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZBB5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Ccdc14	coiled-coil domain containing 14	RGD1562189_predicted	similar to CCDC14 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562189_predicted	similar to CCDC14 protein (predicted)	LOC288054	similar to CCDC14 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC288054	similar to CCDC14 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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