Rbp7 (retinol binding protein 7) - Rat Genome Database

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Gene: Rbp7 (retinol binding protein 7) Rattus norvegicus
Analyze
Symbol: Rbp7
Name: retinol binding protein 7
RGD ID: 1562168
Description: Predicted to enable fatty acid binding activity and retinoid binding activity. Predicted to be involved in fatty acid transport. Predicted to be active in cytosol and nucleus. Orthologous to human RBP7 (retinol binding protein 7); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362662; retinoid-binding protein 7; retinol binding protein 7, cellular; RGD1562168; similar to retinoid binding protein 7
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,169,700 - 165,177,427 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5165,172,785 - 165,177,399 (-)EnsemblGRCr8
mRatBN7.25159,889,723 - 159,894,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,889,723 - 159,894,339 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5162,606,352 - 162,610,966 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,426,302 - 164,430,951 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,382,671 - 164,387,319 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5164,752,448 - 164,757,062 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive5166,765,503 - 166,770,117 (-)NCBILyon_Normotensive
Lyon_Hypertensive5165,941,145 - 165,945,759 (-)NCBILyon_Hypertensive
F344_StmMcwi5159,485,611 - 159,490,225 (-)NCBIF344_StmMcwi
Rnor_6.05166,278,214 - 166,282,832 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,278,187 - 166,282,831 (-)Ensemblrn6Rnor6.0
Rnor_5.05169,925,571 - 169,930,189 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45166,528,436 - 166,533,050 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5158,159,517 - 158,164,107 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP)
amitrole  (EXP)
amphetamine  (EXP)
anthracen-2-amine  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
copper(II) sulfate  (ISO)
decabromodiphenyl ether  (EXP)
Dibutyl phosphate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
fonofos  (ISO)
furan  (EXP)
gardiquimod  (ISO)
genistein  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
isoprenaline  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
mercury dibromide  (ISO)
metformin  (EXP)
methamphetamine  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP)
parathion  (ISO)
PCB138  (ISO)
pentanal  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
potassium chromate  (ISO)
propanal  (ISO)
protein kinase inhibitor  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
testosterone  (EXP)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11022035  


Genomics

Comparative Map Data
Rbp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,169,700 - 165,177,427 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5165,172,785 - 165,177,399 (-)EnsemblGRCr8
mRatBN7.25159,889,723 - 159,894,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,889,723 - 159,894,339 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5162,606,352 - 162,610,966 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,426,302 - 164,430,951 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,382,671 - 164,387,319 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5164,752,448 - 164,757,062 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive5166,765,503 - 166,770,117 (-)NCBILyon_Normotensive
Lyon_Hypertensive5165,941,145 - 165,945,759 (-)NCBILyon_Hypertensive
F344_StmMcwi5159,485,611 - 159,490,225 (-)NCBIF344_StmMcwi
Rnor_6.05166,278,214 - 166,282,832 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,278,187 - 166,282,831 (-)Ensemblrn6Rnor6.0
Rnor_5.05169,925,571 - 169,930,189 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45166,528,436 - 166,533,050 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5158,159,517 - 158,164,107 (-)NCBICelera
Cytogenetic Map5q36NCBI
RBP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,997,228 - 10,016,021 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,997,054 - 10,016,021 (+)Ensemblhg38GRCh38
GRCh37110,057,286 - 10,076,079 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,979,861 - 9,998,665 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3419,991,539 - 10,010,343NCBI
Celera19,168,283 - 9,187,512 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,212,222 - 9,231,040 (+)NCBIHuRef
CHM1_1110,046,598 - 10,065,387 (+)NCBICHM1_1
T2T-CHM13v2.019,540,276 - 9,559,075 (+)NCBIT2T-CHM13v2.0
Rbp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,534,144 - 149,550,919 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,534,144 - 149,539,435 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384149,449,687 - 149,466,462 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,449,687 - 149,454,978 (-)Ensemblmm10GRCm38
MGSCv374148,823,810 - 148,829,077 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364148,293,501 - 148,298,768 (-)NCBIMGSCv36mm8
Celera4151,713,836 - 151,718,976 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.4NCBI
RBP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,201,120 - 218,228,734 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,846,821 - 216,874,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,765,097 - 8,793,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,995,480 - 10,023,841 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,995,480 - 10,015,093 (+)EnsemblpanPan2panpan1.1
RBP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,163,201 - 63,180,338 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,162,523 - 63,180,331 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha563,178,294 - 63,195,021 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0563,391,360 - 63,408,528 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,391,142 - 63,408,521 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,412,112 - 63,429,078 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,250,582 - 63,267,292 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,655,469 - 63,672,446 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,414,234 - 33,421,835 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366233,899,471 - 3,907,080 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366233,899,506 - 3,907,073 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,313,309 - 70,326,455 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1670,313,316 - 70,326,407 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,340,065 - 64,353,666 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,755,222 - 121,796,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,751,290 - 121,774,377 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605425,674,600 - 25,694,652 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbp7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1111,319,598 - 11,324,428 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbp7
56 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:40
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000021348
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5160111176171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5156396728167181764Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat

Markers in Region
AA998510  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,889,752 - 159,889,938 (+)MAPPERmRatBN7.2
Rnor_6.05166,278,244 - 166,278,429NCBIRnor6.0
Rnor_5.05169,925,601 - 169,925,786UniSTSRnor5.0
RGSC_v3.45166,528,466 - 166,528,651UniSTSRGSC3.4
Celera5158,159,547 - 158,159,732UniSTS
RH 3.4 Map51116.6UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
16 12 61 49 90 90 59 23 59 6 262 117 11 24 62 83 31

Sequence


Ensembl Acc Id: ENSRNOT00000021348   ⟹   ENSRNOP00000021348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5165,172,785 - 165,177,399 (-)Ensembl
mRatBN7.2 Ensembl5159,889,723 - 159,894,339 (-)Ensembl
Rnor_6.0 Ensembl5166,278,187 - 166,282,831 (-)Ensembl
RefSeq Acc Id: NM_001108693   ⟹   NP_001102163
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,172,785 - 165,177,399 (-)NCBI
mRatBN7.25159,889,723 - 159,894,338 (-)NCBI
Dahl_SR_JrHsd5164,752,448 - 164,757,062 (-)NCBI
Lyon_Normotensive5166,765,503 - 166,770,117 (-)NCBI
Lyon_Hypertensive5165,941,145 - 165,945,759 (-)NCBI
F344_StmMcwi5159,485,611 - 159,490,225 (-)NCBI
Rnor_6.05166,278,214 - 166,282,832 (-)NCBI
Rnor_5.05169,925,571 - 169,930,189 (-)NCBI
RGSC_v3.45166,528,436 - 166,533,050 (-)RGD
Celera5158,159,517 - 158,164,107 (-)RGD
Sequence:
RefSeq Acc Id: XM_063288084   ⟹   XP_063144154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,169,700 - 165,177,427 (-)NCBI
RefSeq Acc Id: XM_063288085   ⟹   XP_063144155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,169,700 - 165,177,427 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144154 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144155 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL81162 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021348
  ENSRNOP00000021348.5
RefSeq Acc Id: NP_001102163   ⟸   NM_001108693
- UniProtKB: A6IUB1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021348   ⟸   ENSRNOT00000021348
RefSeq Acc Id: XP_063144154   ⟸   XM_063288084
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063144155   ⟸   XM_063288085
- Peptide Label: isoform X1
Protein Domains
Cytosolic fatty-acid binding proteins

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABD9-F1-model_v2 AlphaFold D4ABD9 1-134 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694271
Promoter ID:EPDNEW_R4796
Type:single initiation site
Name:Rbp7_1
Description:retinol binding protein 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05166,282,842 - 166,282,902EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562168 AgrOrtholog
BioCyc Gene G2FUF-39131 BioCyc
Ensembl Genes ENSRNOG00000015850 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021348 ENTREZGENE
  ENSRNOT00000021348.7 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  iLBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd UniProtKB/TrEMBL
KEGG Report rno:362662 UniProtKB/TrEMBL
NCBI Gene 362662 ENTREZGENE
PANTHER PTHR11955 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PhenoGen Rbp7 PhenoGen
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015850 RatGTEx
Superfamily-SCOP Calycin UniProtKB/TrEMBL
UniProt A6IUB1 ENTREZGENE, UniProtKB/TrEMBL
  D4ABD9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-09 Rbp7  retinol binding protein 7  Rbp7  retinol binding protein 7, cellular  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Rbp7  retinol binding protein 7, cellular  RGD1562168_predicted  similar to retinoid binding protein 7 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562168_predicted  similar to retinoid binding protein 7 (predicted)  LOC362662  similar to retinoid binding protein 7  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362662  similar to retinoid binding protein 7      Symbol and Name status set to provisional 70820 PROVISIONAL