LOC290071 (similar to T cell receptor V-alpha J-alpha) - Rat Genome Database

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Gene: LOC290071 (similar to T cell receptor V-alpha J-alpha) Rattus norvegicus
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Symbol: LOC290071
Name: similar to T cell receptor V-alpha J-alpha
RGD ID: 1562163
Description:
Type: protein-coding
Previously known as: LOC290098; LOC364379; MGC109112; MGC109116; MGC109127; MGC109132; MGC109136; MGC109138; MGC109153; MGC112740; MGC112749; MGC116403; RGD1359684; similar to RIKEN cDNA A430107P09 gene; similar to T-cell receptor alpha chain precursor V and C regions (TRA29); T-cell receptor alpha chain; Tcra; Tra29
Allele / Splice: LOC290071Tn(sb-T2/Bart3)2.170Mcwi
Genetic Models: F344-LOC290071Tn(sb-T2/Bart3)2.170Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.41532,234,625 - 32,273,880 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.41530,634,899 - 30,636,521 (-)ENTREZGENERGSC_v3.4RGSC_v3.4rn4
Celera1526,725,164 - 27,247,329 (+)NCBICelera
Cytogenetic Map15p13NCBI



Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:2962935   PMID:9164970   PMID:9352349   PMID:12477932   PMID:15096488   PMID:16751390  


Genomics

Markers in Region
AI501734  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21527,586,563 - 27,586,747 (+)MAPPERmRatBN7.2
Rnor_6.01532,777,417 - 32,777,600NCBIRnor6.0
Rnor_5.01536,588,237 - 36,588,420UniSTSRnor5.0
RGSC_v3.41532,193,992 - 32,194,175UniSTSRGSC3.4
Celera1527,168,702 - 27,168,885UniSTS
RH 3.4 Map15215.0UniSTS
Cytogenetic Map15p13UniSTS


Genetic Models
This gene LOC290071 is modified in the following models/strains:
F344-LOC290071Tn(sb-T2/Bart3)2.170Mcwi    


Expression

RNA-SEQ Expression


Sequence


Protein Domains
Ig-like   Immunoglobulin   Immunoglobulin V-set   T-cell receptor alpha chain constant


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7379916 IMAGE-MGC_LOAD
  IMAGE:7380098 IMAGE-MGC_LOAD
  IMAGE:7381661 IMAGE-MGC_LOAD
  IMAGE:7382388 IMAGE-MGC_LOAD
  IMAGE:7382760 IMAGE-MGC_LOAD
  IMAGE:7383056 IMAGE-MGC_LOAD
  IMAGE:7387331 IMAGE-MGC_LOAD
  IMAGE:7388480 IMAGE-MGC_LOAD
  IMAGE:7388571 IMAGE-MGC_LOAD
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  TCR_alpha_C UniProtKB/TrEMBL
  TCR_alpha_variable UniProtKB/TrEMBL
  TCR_variable_region UniProtKB/TrEMBL
MGC_CLONE MGC:109112 IMAGE-MGC_LOAD
  MGC:109116 IMAGE-MGC_LOAD
  MGC:109127 IMAGE-MGC_LOAD
  MGC:109132 IMAGE-MGC_LOAD
  MGC:109136 IMAGE-MGC_LOAD
  MGC:109138 IMAGE-MGC_LOAD
  MGC:112740 IMAGE-MGC_LOAD
  MGC:112749 IMAGE-MGC_LOAD
  MGC:116403 IMAGE-MGC_LOAD
NCBI Gene 290071 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR19339:SF9 UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 22 UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 39 UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 8-3 UniProtKB/TrEMBL
  T-CELL RECEPTOR ALPHA CHAIN V REGION UniProtKB/TrEMBL
Pfam DUF1968 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PhenoGen LOC290071 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt Q4KLG4_RAT UniProtKB/TrEMBL
  Q562C1_RAT UniProtKB/TrEMBL
  Q566Q6_RAT UniProtKB/TrEMBL
  Q569A8_RAT UniProtKB/TrEMBL
  Q569A9_RAT UniProtKB/TrEMBL
  Q5BJZ1_RAT UniProtKB/TrEMBL
  Q5BJZ7_RAT UniProtKB/TrEMBL
  Q5BK55_RAT UniProtKB/TrEMBL
  Q5I0I7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-06 LOC290071  similar to T cell receptor V-alpha J-alpha  LOC290071  similar to T cell receptor V-alpha J-alpha  Type changed (type changed from [allele] to [protein-coding]) 629549 APPROVED
2013-11-27 LOC290071  similar to RIKEN cDNA A430107P09 gene  LOC290098  similar to T cell receptor V-alpha J-alpha  Data merged from RGD:1560631 737654 APPROVED
2013-11-27 LOC290071  similar to T cell receptor V-alpha J-alpha  LOC290071  similar to RIKEN cDNA A430107P09 gene  Name and Type changed (type changed from [null] to [allele]) 629549 APPROVED
2009-01-20 LOC290071  similar to RIKEN cDNA A430107P09 gene  RGD1359684  similar to T-cell receptor alpha chain precursor V and C regions (TRA29)  Data merged from RGD:1359684 737654 APPROVED
2006-02-09 LOC290071  similar to RIKEN cDNA A430107P09 gene      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-02-09 LOC290098  similar to T cell receptor V-alpha J-alpha      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 RGD1359684  similar to T-cell receptor alpha chain precursor V and C regions (TRA29)  LOC364379  similar to T-cell receptor alpha chain precursor V and C regions (TRA29) - rat (fragment)  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC364379  similar to T-cell receptor alpha chain precursor V and C regions (TRA29) - rat (fragment)      Symbol and Name status set to provisional 70820 PROVISIONAL