Advanced Search (OLGA)

Gene: Map3k9 (mitogen-activated protein kinase kinase kinase 9) Rattus norvegicus

Analyze

Symbol:

Map3k9

Name:

mitogen-activated protein kinase kinase kinase 9

RGD ID:

1562149

Description:

Predicted to enable JUN kinase kinase kinase activity and molecular function activator activity. Involved in positive regulation of apoptotic process. Predicted to be active in cytoplasm. Orthologous to human MAP3K9 (mitogen-activated protein kinase kinase kinase 9); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500690; mixed-lineage kinase 1; RGD1562149; similar to mixed-lineage protein kinase 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	107,155,008 - 107,220,304 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	107,161,534 - 107,220,061 (-)	Ensembl				GRCr8
mRatBN7.2	6	101,423,754 - 101,488,822 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	101,430,292 - 101,488,822 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	101,582,640 - 101,644,162 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	101,881,832 - 101,943,350 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	101,251,811 - 101,312,796 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	105,455,461 - 105,518,974 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	105,459,706 - 105,518,748 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	113,600,824 - 113,664,922 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	105,593,215 - 105,651,838 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	99,264,909 - 99,326,663 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

melanoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bromobenzene (EXP)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethylarsinic acid (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

Erionite (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

genistein (ISO)

gentamycin (EXP)

methotrexate (ISO)

methoxychlor (EXP)

methylarsonic acid (ISO)

methylparaben (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

MAPK cascade (IEA)

positive regulation of apoptotic process (IMP)

positive regulation of cellular process (IMP)

protein autophosphorylation (ISO)

protein phosphorylation (ISO)

signal transduction (IBA)

Cellular Component

cytoplasm (IBA)

Molecular Function

ATP binding (IEA)

JUN kinase kinase kinase activity (IBA)

kinase activity (IEA)

MAP kinase kinase kinase activity (IEA)

molecular function activator activity (ISO)

nucleotide binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

c-Jun N-terminal kinases MAPK signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The c-jun kinase/stress-activated pathway: regulation, function and role in human disease.	Johnson GL and Nakamura K, Biochim Biophys Acta. 2007 Aug;1773(8):1341-8. Epub 2007 Jan 4.
3.	Mixed lineage kinase 3 (MLK3)-activated p38 MAP kinase mediates transforming growth factor-beta-induced apoptosis in hepatoma cells.	Kim KY, etal., J Biol Chem 2004 Jul 9;279(28):29478-84. Epub 2004 Apr 6.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	The MLK family mediates c-Jun N-terminal kinase activation in neuronal apoptosis.	Xu Z, etal., Mol Cell Biol. 2001 Jul;21(14):4713-24.

Additional References at PubMed

PMID:14690535	PMID:15610029	PMID:32185607	PMID:38728237

Genomics

Comparative Map Data

Map3k9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	107,155,008 - 107,220,304 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	107,161,534 - 107,220,061 (-)	Ensembl				GRCr8
mRatBN7.2	6	101,423,754 - 101,488,822 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	101,430,292 - 101,488,822 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	101,582,640 - 101,644,162 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	101,881,832 - 101,943,350 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	101,251,811 - 101,312,796 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	105,455,461 - 105,518,974 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	105,459,706 - 105,518,748 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	113,600,824 - 113,664,922 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	105,593,215 - 105,651,838 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	99,264,909 - 99,326,663 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

MAP3K9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	70,722,526 - 70,809,513 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	70,722,526 - 70,809,545 (-)	Ensembl			hg38	GRCh38
GRCh37	14	71,189,243 - 71,276,230 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	70,264,605 - 70,345,641 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	70,264,608 - 70,345,641	NCBI
Celera	14	51,258,808 - 51,339,845 (-)	NCBI		Celera
Cytogenetic Map	14	q24.2	NCBI
HuRef	14	51,363,347 - 51,444,280 (-)	NCBI		HuRef
CHM1_1	14	71,133,029 - 71,214,016 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	64,928,525 - 65,015,550 (-)	NCBI		T2T-CHM13v2.0

Map3k9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	81,761,724 - 81,828,010 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	81,767,784 - 81,827,949 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	81,714,950 - 81,781,170 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	81,721,010 - 81,781,175 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	82,815,937 - 82,882,157 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	82,647,262 - 82,699,855 (-)	NCBI		MGSCv36	mm8
Celera	12	83,184,675 - 83,267,861 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	37.91	NCBI

Map3k9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	4,326,317 - 4,385,544 (+)	Ensembl
ChiLan1.0	NW_004955523	4,326,315 - 4,387,390 (+)	NCBI	ChiLan1.0	ChiLan1.0

MAP3K9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	71,841,016 - 71,927,463 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	71,057,529 - 71,143,961 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	51,310,565 - 51,396,994 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	70,180,583 - 70,266,544 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	70,188,444 - 70,266,460 (-)	Ensembl			panPan2	panpan1.1

MAP3K9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	44,435,714 - 44,509,528 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	44,440,692 - 44,509,925 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	44,099,160 - 44,173,934 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	44,658,141 - 44,732,891 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	44,660,727 - 44,733,473 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	44,318,363 - 44,393,162 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	44,357,297 - 44,432,135 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	44,718,304 - 44,793,069 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Map3k9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	31,682,148 - 31,713,062 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	363,753 - 431,130 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	355,906 - 386,829 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAP3K9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	94,303,085 - 94,380,259 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	94,296,349 - 94,380,060 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	100,668,792 - 100,687,653 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAP3K9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	47,932,427 - 48,017,110 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666053	36,149,209 - 36,238,212 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Map3k9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	30,412,008 - 30,477,507 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	30,412,019 - 30,484,292 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Map3k9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	95,913,424 - 95,975,939 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Map3k9
1044 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	84
Count of miRNA genes:	74
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000009693
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	162	91	90	59	92	59	6	355	191	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY240866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009693 ⟹ ENSRNOP00000009693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	107,161,534 - 107,220,061 (-)	Ensembl
mRatBN7.2 Ensembl	6	101,430,292 - 101,488,822 (-)	Ensembl
Rnor_6.0 Ensembl	6	105,459,882 - 105,518,725 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083488 ⟹ ENSRNOP00000069168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	107,161,534 - 107,220,061 (-)	Ensembl
mRatBN7.2 Ensembl	6	101,430,292 - 101,488,822 (-)	Ensembl
Rnor_6.0 Ensembl	6	105,459,706 - 105,518,748 (-)	Ensembl

RefSeq Acc Id:

NM_001100872 ⟹ NP_001094342

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	107,161,534 - 107,220,061 (-)	NCBI
mRatBN7.2	6	101,430,292 - 101,488,822 (-)	NCBI
Rnor_6.0	6	105,459,706 - 105,518,748 (-)	NCBI
Rnor_5.0	6	113,600,824 - 113,664,922 (-)	NCBI
Celera	6	99,264,909 - 99,326,663 (-)	NCBI

Sequence:

show sequence

GCGGCCGCCCCGCACCCTATGGACCGGCCGCTCCATGGAGTCCTCCAGATCGCTTCTCGGCTGC
CTGGCGAGCGCCGCTGCGGCCCCGCCGGGGGAGGATGCCACCGGTGCTGGGGCCGAAGAGGAGG
AAGACGAAGAGGAGGCGGCGGCCGAGCTGGGATCTCATGCCACGCTGCCCTACTGGACGGCTGT
GTTCGAGTACGAGGCGGCAGGAGAGGACGAGCTGACCCTGCGGCTGGGCGATGTGGTAGAGGTG
CTGTCCAAGGACTCTCAGGTGTCCGGCGATGAGGGCTGGTGGACCGGACAGCTGAACCAGCGGG
TGGGCATCTTCCCCAGCAACTACGTGACCCCGCGCAGCGCCTTCTCCAGTCGCTGCCAGCCGGG
CACGGAGGACCCCAGCTGCTACCCGCCCATTCAGCTGTTGGAGATTGATTTTGCGGAGCTAACC
CTGGAGGAGATCATCGGCATTGGAGGCTTTGGGAAAGTCTATCGTGCTTTCTGGGTAGGTGACG
AGGTGGCCGTGAAAGCAGCTCGCCACGACCCTGATGAGGACATCAGCCAGACCATAGAGAATGT
TCGCCAAGAGGCCAAGCTCTTTGCCATGCTGAAACACCCGAACATCATTGCCCTCAGAGGGGTG
TGCCTGAAGGAACCCAACCTCTGCTTGGTCATGGAGTTCGCTCGTGGAGGGCCTCTGAACAGAG
TGTTGTCTGGGAAGAGGGTTCCCCCGGACATCCTGGTGAACTGGGCCGTGCAGATCGCCAGAGG
GATGAACTACCTACATGATGAGGCGATCGTGCCCGTCATCCACCGAGACCTTAAGTCCAGCAAC
ATACTGATCCTGCAGAAAGTGGAGAATGGAGACCTGAGTAACAAGACTCTGAAGATCACTGACT
TCGGGCTGGCACGGGAATGGCACCGGACCACCAAGATGAGTGCGGCGGGGACATACGCTTGGAT
GGCGCCTGAAGTCATCCGCGCTTCCATGTTTTCCAAGGGCAGCGATGTGTGGAGCTATGGAGTA
CTGCTCTGGGAACTGTTGACTGGCGAGGTGCCCTTCCGGGGCATTGATGGCTTAGCAGTGGCTT
ACGGTGTGGCAATGAACAAGCTCGCCCTTCCTATCCCTTCTACCTGCCCAGAGCCTTTTGCCAA
ACTCATGGAAGACTGCTGGAATCCTGACCCCCACTCACGTCCATCTTTCTCTAGTATCCTGGAC
CAGCTAACGACTATAGAAGAGTCTGGTTTCTTTGAGATGCCCAAGGACTCCTTCCACTGCCTGC
AGGATGACTGGAAACATGAGATTCAGGAGATGTTTGACCAACTCAGGGCCAAAGAAAAGGAGCT
TCGAACCTGGGAAGAAGAGCTGACCCGGGCTGCGCTCCAGCAGAAGAATCAGGAGGAGCTGCTT
CGGCGTAGGGAGCAGGAGCTGGCTGAGCGGGAGATCGACATCCTGGAACGAGAGCTCAACATCA
TCATCCACCAGCTGTGCCAGGAAAAGCCCCGGGTGAAGAAACGCAAGGGCAAGTTCAGGAAGAG
CCGACTGAAGCTCAAGGACGGCAACCGCATCAGCCTTCCCTCGGATTTCCAGCACAAGTTCACG
GTGCAGGCCTCCCCGACCATGGATAAAAGGAAGAGTTTGATCAGCAACCGATCGAGTCCTCCTG
CAAGCCCCACCATCATCCCTCGCCTTCGAGCCATTCAGTTGACACCAGGTGAAAGTAGTAAAAC
CTGGGGCCGGAGCTCAGTTGTTCCAAAAGAGGAAGGGGAAGAAGAGGAGAAGAGGGCCCCAAAG
AAGAAAGGCCGGACGTGGGGACCAGGGACGCTTGGACAGAAGGAGCTCACGTCAGGAGATGAAG
GCCTCAAGTCCCTGGTAGACGGATACAAGCAGTGGTCATCCAGTGCCCCCAACCTGGGGAAGGG
CCCGAGGAGTAGCCCTGCCCTGCCCGGGTTCACCAGCCTTATGGAGATAGAGGATGAGGATAGT
GAAGGCCCAGGAAGCGGAGAGAATCATCTACAGCATTCACCCAACCAGTCCTACCTCTGTATCC
CATTTCCTCGTGGGGAGGATGGGGATGGCCCCTCCAGTGATGGAATTCATGAGGAACCCACCCC
AGTCAACTCAGCTACCAGTACCCCTCAGCTGACGCCAACTAACAGCCTCAAGCGCAGCGGGACC
CACCACCGGCGCTGCGAGGTCGCTCTGCTCGGATGTGGAGCTGTTCTGGCAGCCACAGGCCTGG
GGTTTGACTTGCTGGAAGCTGGCAAGTGCCAGTTGCTTCCCCCAGAGGAACCTGAGCCACCAGC
CCGGGAGGAAAAGAAGAGGCGAGAGGGTCTTTTCCAAAGGGCCAGTCGCCCTCGTCGGAGTACC
AGCCCGCCCTCCCGAAAGCTCTTTAAGAAGGAAGAGCCGATGACGTTGCTAGGAGACCCCTCTG
CCTCCTTGACACTGCTGTCTCTCTCCTCCATCTCTGAATGCAACTCTACTCGCTCCCTACTGCG
CTCTGACAGTGATGAGATCGTGGTGTATGAAATGCCAGTCAGCCCAGTTGAAGCTCCACCCCTA
ACCCAGTGCACCCAGAACCCCCTGGTTAATGTCCGAGTGGAGCGCTTCAAGAGAGACCCCAACC
AGTCCCTGACTCCCACCCACGTCACCCTCACAGCCCCCACACAGCCTAGTGGTCACAGGCGGAC
TCCTTCTGATGGGGCACTTAAACCAGCATCAGTGCCCCCAGCCCTGGGCAGCAGAAGCCCCTCC
AGCAATGGAGTGAGCCCTGGTCCTGGAGCAGGCATGTTGAAAACCCCCAGTCCCAGCCGAGACC
CAGGCGAATTTCCCCGTCTCCCTGACCCCAACGTGGTCTTTCCCCCAACTCCGAGGCGCTGGAA
CACACAGCGAGACTCTACCTTAGAGAGACCCAAGACGCTGGAGTTTCTGCCTCGGCCACGTCCT
TCTGCCAACCGGCAGCGGCTGGACCCTTGGTGGTTTGTGTCCCCCAGCCATGCCCGCAGCGCCT
CCCCAGCTAATAGCTCCAGCACAGAGACACCCAGCAACCTGGACTCCTGCTTTGCCAGCAGCAG
CAGCACTGTGGAAGAGCGGCCTGGACTCCCAGCCCTGCTCCCCTTACAGGCAGGGCCACTGCCC
CCTGCTGAGCGGACACTTCTGGACCTGGACGCTGAGGGGCAGAGCCAGGATAGCACTGTGCCCC
TGTGCAGAGCTGAACTGAATGCACATGGGCCTTCTCCATATGAGATCCAACAGGAGTTCTGGTC
TTAGTGAAAAAGGGTCAGGGTGGGCAAGGGAGAAGTCGGAGGAGGCAGAGGGAGCTGGCTGGCA
CAGCCCGGTCTCAGTTAGGCCCCCTGGGATCCAGACCTCCTCCTTGCACTGAAAATGCACTTTG
AAGACGGAAGGGATAGCAGCAGGGCCACCGGAGAGTCTCCTGGCCTGCAGTATCTTTCCTCCAT
GTTCACTAGAGGGGCTGTGTCAGCTCTAGCTGTGTGCATATGTCCCCACCCTCTGGTCTTCCTC
GCCTTTAGGGTGACACAACTGCCTCTTCTCAGCCAACTAGAGTTGTCCCGGGTTCCCTTTGTCA
GCCCTGAGTCCTACCTGTTCACACAGCGCTACTGATGTTCTGTGATTGATCTGA

hide sequence

RefSeq Acc Id:

XM_006240303 ⟹ XP_006240365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	107,155,008 - 107,220,304 (-)	NCBI
mRatBN7.2	6	101,423,754 - 101,488,821 (-)	NCBI
Rnor_6.0	6	105,455,461 - 105,518,974 (-)	NCBI
Rnor_5.0	6	113,600,824 - 113,664,922 (-)	NCBI

Sequence:

show sequence

GCACGAGCAGGTGGGAGCCGCCGAGGGGCGAGGCCGCCCGCGGGGGCGCCAGGCGGCGGGCACT
GCACCGCGCCCCTGTCCGCGGTGCGCGCTCGCGGTGCGCACCGGGCGTCCTCGACTCTCGCGCG
CCTACCCTGCTCCGGCCCTACCTGCGGCGGCCGTCCGGGGCGCGGAGCCCCCAGCGCTGCCGAG
CCGCATGAACAATAGGCGGCGGCGGCTCCCGCGGGCGGCCGCCCCGCACCCTATGGACCGGCCG
CTCCATGGAGTCCTCCAGATCGCTTCTCGGCTGCCTGGCGAGCGCCGCTGCGGCCCCGCCGGGG
GAGGATGCCACCGGTGCTGGGGCCGAAGAGGAGGAAGACGAAGAGGAGGCGGCGGCCGAGCTGG
GATCTCATGCCACGCTGCCCTACTGGACGGCTGTGTTCGAGTACGAGGCGGCAGGAGAGGACGA
GCTGACCCTGCGGCTGGGCGATGTGGTAGAGGTGCTGTCCAAGGACTCTCAGGTGTCCGGCGAT
GAGGGCTGGTGGACCGGACAGCTGAACCAGCGGGTGGGCATCTTCCCCAGCAACTACGTGACCC
CGCGCAGCGCCTTCTCCAGTCGCTGCCAGCCGGGCACGGAGGACCCCAGCTGCTACCCGCCCAT
TCAGCTGTTGGAGATTGATTTTGCGGAGCTAACCCTGGAGGAGATCATCGGCATTGGAGGCTTT
GGGAAAGTCTATCGTGCTTTCTGGGTAGGTGACGAGGTGGCCGTGAAAGCAGCTCGCCACGACC
CTGATGAGGACATCAGCCAGACCATAGAGAATGTTCGCCAAGAGGCCAAGCTCTTTGCCATGCT
GAAACACCCGAACATCATTGCCCTCAGAGGGGTGTGCCTGAAGGAACCCAACCTCTGCTTGGTC
ATGGAGTTCGCTCGTGGAGGGCCTCTGAACAGAGTGTTGTCTGGGAAGAGGGTTCCCCCGGACA
TCCTGGTGAACTGGGCCGTGCAGATCGCCAGAGGGATGAACTACCTACATGATGAGGCGATCGT
GCCCGTCATCCACCGAGACCTTAAGTCCAGCAACATACTGATCCTGCAGAAAGTGGAGAATGGA
GACCTGAGTAACAAGACTCTGAAGATCACTGACTTCGGGCTGGCACGGGAATGGCACCGGACCA
CCAAGATGAGTGCGGCGGGGACATACGCTTGGATGGCGCCTGAAGTCATCCGCGCTTCCATGTT
TTCCAAGGGCAGCGATGTGTGGAGCTATGGAGTACTGCTCTGGGAACTGTTGACTGGCGAGGTG
CCCTTCCGGGGCATTGATGGCTTAGCAGTGGCTTACGGTGTGGCAATGAACAAGCTCGCCCTTC
CTATCCCTTCTACCTGCCCAGAGCCTTTTGCCAAACTCATGGAAGACTGCTGGAATCCTGACCC
CCACTCACGTCCATCTTTCTCTAGTATCCTGGACCAGCTAACGACTATAGAAGAGTCTGGTTTC
TTTGAGATGCCCAAGGACTCCTTCCACTGCCTGCAGGATGACTGGAAACATGAGATTCAGGAGA
TGTTTGACCAACTCAGGGCCAAAGAAAAGGAGCTTCGAACCTGGGAAGAAGAGCTGACCCGGGC
TGCGCTCCAGCAGAAGAATCAGGAGGAGCTGCTTCGGCGTAGGGAGCAGGAGCTGGCTGAGCGG
GAGATCGACATCCTGGAACGAGAGCTCAACATCATCATCCACCAGCTGTGCCAGGAAAAGCCCC
GGGTGAAGAAACGCAAGGGCAAGTTCAGGAAGAGCCGACTGAAGCTCAAGGACGGCAACCGCAT
CAGCCTTCCCTCGGATTTCCAGCACAAGTTCACGGTGCAGGCCTCCCCGACCATGGATAAAAGG
AAGAGTTTGATCAGCAACCGATCGAGTCCTCCTGCAAGCCCCACCATCATCCCTCGCCTTCGAG
CCATTCAGTTGACACCAGGTGAAAGTAGTAAAACCTGGGGCCGGAGCTCAGTTGTTCCAAAAGA
GGAAGGGGAAGAAGAGGAGAAGAGGGCCCCAAAGAAGAAAGGCCGGACGTGGGGACCAGGGACG
CTTGGACAGAAGGAGCTCACGTCAGGAGATGAAGGATCCCCTCAGAGACGGGAAAAAGCTAATG
GCTTAAGTACCCCATCAGAGTCTCCACACTTCCACTTGGGCCTCAAGTCCCTGGTAGACGGATA
CAAGCAGTGGTCATCCAGTGCCCCCAACCTGGGGAAGGGCCCGAGGAGTAGCCCTGCCCTGCCC
GGGTTCACCAGCCTTATGGAGATAGAGGATGAGGATAGTGAAGGCCCAGGAAGCGGAGAGAATC
ATCTACAGCATTCACCCAACCAGTCCTACCTCTGTATCCCATTTCCTCGTGGGGAGGATGGGGA
TGGCCCCTCCAGTGATGGAATTCATGAGGAACCCACCCCAGTCAACTCAGCTACCAGTACCCCT
CAGCTGACGCCAACTAACAGCCTCAAGCGCAGCGGGACCCACCACCGGCGCTGCGAGGTCGCTC
TGCTCGGATGTGGAGCTGTTCTGGCAGCCACAGGCCTGGGGTTTGACTTGCTGGAAGCTGGCAA
GTGCCAGTTGCTTCCCCCAGAGGAACCTGAGCCACCAGCCCGGGAGGAAAAGAAGAGGCGAGAG
GGTCTTTTCCAAAGGGCCAGTCGCCCTCGTCGGAGTACCAGCCCGCCCTCCCGAAAGCTCTTTA
AGAAGGAAGAGCCGATGACGTTGCTAGGAGACCCCTCTGCCTCCTTGACACTGCTGTCTCTCTC
CTCCATCTCTGAATGCAACTCTACTCGCTCCCTACTGCGCTCTGACAGTGATGAGATCGTGGTG
TATGAAATGCCAGTCAGCCCAGTTGAAGCTCCACCCCTAACCCAGTGCACCCAGAACCCCCTGG
TTAATGTCCGAGTGGAGCGCTTCAAGAGAGACCCCAACCAGTCCCTGACTCCCACCCACGTCAC
CCTCACAGCCCCCACACAGCCTAGTGGTCACAGGCGGACTCCTTCTGATGGGGCACTTAAACCA
GCATCAGTGCCCCCAGCCCTGGGCAGCAGAAGCCCCTCCAGCAATGGAGTGAGCCCTGGTCCTG
GAGCAGGCATGTTGAAAACCCCCAGTCCCAGCCGAGACCCAGGCGAATTTCCCCGTCTCCCTGA
CCCCAACGTGGTCTTTCCCCCAACTCCGAGGCGCTGGAACACACAGCGAGACTCTACCTTAGAG
AGACCCAAGACGCTGGAGTTTCTGCCTCGGCCACGTCCTTCTGCCAACCGGCAGCGGCTGGACC
CTTGGTGGTTTGTGTCCCCCAGCCATGCCCGCAGCGCCTCCCCAGCTAATAGCTCCAGCACAGA
GACACCCAGCAACCTGGACTCCTGCTTTGCCAGCAGCAGCAGCACTGTGGAAGAGCGGCCTGGA
CTCCCAGCCCTGCTCCCCTTACAGGCAGGGCCACTGCCCCCTGCTGAGCGGACACTTCTGGACC
TGGACGCTGAGGGGCAGAGCCAGGATAGCACTGTGCCCCTGTGCAGAGCTGAACTGAATGCACA
TGGGCCTTCTCCATATGAGATCCAACAGGAGTTCTGGTCTTAGTGAAAAAGGGTCAGGGTGGGC
AAGGGAGAAGTCGGAGGAGGCAGAGGGAGCTGGCTGGCACAGCCCGGTCTCAGTTAGGCCCCCT
GGGATCCAGACCTCCTCCTTGCACTGAAAATGCACTTTGAAGACGGAAGGGATAGCAGCAGGGC
CACCGGAGAGTCTCCTGGCCTGCAGTATCTTTCCTCCATGTTCACTAGAGGGGCTGTGTCAGCT
CTAGCTGTGTGCATATGTCCCCACCCTCTGGTCTTCCTCGCCTTTAGGGTGACACAACTGCCTC
TTCTCAGCCAACTAGAGTTGTCCCGGGTTCCCTTTGTCAGCCCTGAGTCCTACCTGTTCACACA
GCGCTACTGATGTTCTGTGATTGATCTGACTTATCGTCCTTTCTTCCCACGACTCAGTGTCACC
TTTGGTATTTGACGAGTGTCTTGTGTTCCAAGTCCTTTTGTGCCAGCTGATGGGTTTAGGTTGG
CCTTATGAAGGCCAAAGGGTTGACAGACCTGGTACTACCACCTGCACGAATCTCAGTGAGGACT
GAGGATTCAGAGATGGAGGAGAGGAGGCAGTCGGGAACAATCCAGTCAGGCTGGGTGGGGAGGC
TGATAGAAGAACCATGCCTTGGTTTGCTTTGGTTTGGTTTAGGTTTGGGTTTTGGAAACAAAGG
CAGACATCAGCACCCACCGCAGGGCTCCATCCACCCCTGCTTCAGATCACGGTTGCACCAGGTT
TGAATGTCAGCATATTCATCTCAGGAATGGCGTTTGGGAGGCACACTCACTGACCCCGGGTTCC
TGAAGCCAGGAACAATGCCTGCATTTGTTTGTCATGTTGGGCTTCCCTTCTTTCCTCCAGTTCC
TGGAGTCAGTGTGCTTTAGGTCATGTGCGATTCGCAGATACACCTGAAGTATGTCAACATCATA
TGAGGTAGTGTCCTGGACCATGAGGTATGGAACTATGAGGATTCCTTCATCCGACTGTCCATTT
TGTGATGTCCTTGAAGTCAATGGAAACTTGGTAATAATGTTTGGATGCAGGGAGGCAGCAGTGT
GGTACAGTTCCCAAGGCACCCAGTGGGCTGCTGACGCCATCTCTGTCTCTACACAGAGAGCTTT
TGTGCTGGGCCCTATACCATGAGCTGGGTAGTAGAGACAAGAAAGGCTAGTGCTGATGTGTTTA
GTATTTGTTTCTTAAATGTGAATATTGAGCTTCAAAGTGTTTTCACTTATTTTCGTCACTGTCC
ACTCCCCCCGAGCCCCTTGTGTTGTATGTGCACCATGGCCCTTATGTGGCAGTGACAGCTTGGT
TGAGGTTACAGCCCCCAGTAGTGTTGGAGTCTGTCTGCAGTTCTCTCTGCTGCCGTCTGGATGC
CCAGAGGGTTAGAGCGGCACACATAGCGCAGGTGACAGATTTCATCGTTGCTGTTTCTCTGGGA
AGCACATATGCGATGATGTTGGCTCCCACAAGTTCTTTATGAGCTCTTTCGCCCTTTGTCTCAA
CCCTGCACCCCCAGTTACAGACAGGGGATCAGTACTGATGGTGTCTGTCAGCCAGAGTTTTGCT
ATAATATCTGATCTTCCCTCTTGGTTCTGTGAAATGAGAATGAAGAGATTAGCTTTGCCCCATA
CTCAGATAGGCGAGGGGAGCTCGTGAGCCCCCTCAGTCCCAGCCAACCCAGCGATGATGCTCCC
CTGTTCCAAGCCACAATCATCTGTACACCAGCCCCAAGCAGAGCTTTTTCCTGTAGCCATCTCC
AGGAGAGACATTGTTAAAGATGCAGTATACACTGAGTGGCAACTATATGCCATTGAGTGACAGG
TGGAATCTAGTTCCTCTCCACCCATCATTCAGACAGGGGAAGGCTTTGCTGAGGAGATGATTGT
ACCCGGGAGAAGTGAACACAGGACTATATAATCTGCTGCTGGGAGCATGAGTTACCATGGGGGA
TGTGTGTCTCCTTTAGCTCTTCCAAACCTATGCAGTGCTGGCCCGCTGCCTGCCACACTGCCGT
GCAAGCCTGGAGATGGGATGAATGCTAAGCCGTTACCATTTGTGTGACATAGGTTCCCTTGTCT
GTGGTCATGGTTAGGACCAGGCTTGGTGGGTGTGAATAAACCCACTTACGTGGCAGTGGTTCTC
CCTTTCACTTCCCTTTCCTCAAAGACTTGACTGTCTTCTTGGAACGCATGTCCCTACCTTCAAG
ATGCTAACAGGATTGGATACTGTTCTTTCCTGTGAGTCTCCTCAGTTCCTGGTGATAGCCTGGA
TCTACAAGGATAAGCGCTGGCAAGTGAAGCAAGTTCTAGGAAGCTGTTGTGGATGCTCCTGGTA
TTCTCTGACATTTCTGTGACCTCGTAGACATCATCATTAGGATAGCCTACATTTGGACAACTCA
GAATGGGGATGTTTTTCCTTCTGACCTTTTAAAGTGACATTATTTTCTTCATATATGATACACT
TGTCTCAACAGGAAGACAGACAGACACTGTTTGGATGGTTGGGTCTGGCCACCAGGCTCTGACA
CCGTACAAGTTGGCCCGCCTCCTCTGTTCTGCTTTTCTTGCATGACTCTGGTCCTGTGTCTTGA
ACTCTCTCAGGTTTCCTTCTAAAAGCCTTTATCATATACTTCCCTTGCAAGGGCATTGAGACAC
TGTAGCGCCCTGCCAGCTTGAGGGCCAGTCTCTTCCCCTGCAGGATGAATATGTTGGAGCTGGC
AGCGTTGTTCTCACCATCTTTGCCTCTGGGCATCTTGCCTTAGTTTTGTCCTTTGGCTTCTAGA
AGGTGAGTGGTTTGGAGTTGGTTTGACACGATGAATGGGCACCCAGGCCAGGCACATGCTCTTC
CACCACATCATGTAGCCCAGGTGACTACGTAATCATTTTCTAATCTTCTCCCTACTTAATCTGT
CCAGCTGGGTGTGCTCACCATTTGTGTCTTGCTGAGGGCCGGGAGCTGGGTGGCAGCATCTGGA
TGGCAGTTTGCTGTCTTTGCTTTTTGAGGATCATCCCTAGAGTGTATTTGGTAAGAATTTGAAA
TCAGGCCAGTTCTGGAATAATCTTTGGGAAAAGGGTCCCTAGCAATGGGACATCATGTGTCGGA
TGATGATGCGCCTCCCTTCACCTCAGGCTGTTGCTCAGGAACACAGACATTGTGGGGTGTTTAG
ACCCGACCCTTGCTCCACGCTTTTGCCCCATGAGAAGGGCCATTCTTAACTCATGTCTTCTGCT
CATCTTCTTTCCTCTGCTACCCCACCCACCCCCATAGCTGGATCTCCCATTTGATGAGCAAGGG
CCCACCAAGATCAAGCTCCTAACAGAGTAAAGAGCAGTGGGCCCTGAAGGCTGGGTGGGCGGCT
GCAAGTGTCCAGTGGTGCTCCGCCATGGAAGCCCCGACTTTTATCATGTTTATTTGATCGTGTG
CCTTTGGATGGGTGTGTGAGGAGTTGTGCATTCCGATAGGTCAGAAGCACACATCTCTAGAAGC
CTGGGAAAGAGGCAGGTCCTACTGTTGGCGAAGTACTGAACTTCCTCTAAGGACTTAATAGACT
GGAATTAGGGTAGAGGTAAGAGTGGCTCCCAAGGAGTTGTGGGTGGCTAGAACCTGGCAACTTA
AGCTGTCCATTTTCAAGTCAAAGTTTGCCAATAATCTGGTCCTCAGAAGCCTGGCTGTGAGCTG
GAGATGATACTCCTCTGCTTAAAGCCCTTCTAACTTCAAAACCTACATCTTAGCTAGGTTCAGG
GATCCATTCCTGGAAGCCCAACCCCTCAGGAGACTGAGGCAGGGCAATTGATTCAGCCCCAGGT
GTGATGTCAGTCTGGAGCAACACAGCAAAGTCCTATTTCTTAAACGTGTGATGCCAGAACCCCG
GCTCCAGCACAGCAACATTGCTTCCCTTGGTGGAGAAAGTGAGAATGTCTGTGTGACTGGAGGT
CAAAGGCTACAGTTGGCCACTCTATATGGCTCAGTCATATATCACCTGTCATTCATTGTCCTTG
GCTTGGCCTGAGAATGACTTCCTGTCATGATTTAGTTGTTGGAGACTCATTTCCAGATGGCAAA
ACAATATTTTCCTAGTTCAAAAATTGTAATAAAATCCACACATGGAAGGAAAAAGGCCCTTCAC
CTCAGACTCTGGCATAGCTGCCTGGAGGCTCACCATCTCTGGTGCCTAGTTGGAGGGCAGGAAT
CAGGAGCTGGGATGGGTAATTAATACACATCTAACTAGTCTCACCCAGAGCTGGGTTCATGGTT
AGGTTTGCAAGCCAGATTTTTTTTCATGAACTTCTAGGTATTTCCATTCACCGCCTTTGTCCAT
TTCTGGAGGCACCTGGGCCTCCCTAAGCTGCGGGGAGGCACTGGACTGACTTTTCAGAGTACTC
GGCTCTGCCCTGGCACTGACTGGTCCTCGATTTCTTACTGCCTTTGTCCCTGCATCCTCTCTAA
GTCTCATGTTGGAAAAGAGAAGATCCTGGGGATGGTGGGCGCTAACCTGAGCTGTTAGCTCCTT
TGGAAACAGGCCTGCCTTGCCGTGCCCTGACTGACCCTCTAACTGCTCTGCCCAGCCCTTGGAT
TGTCAGATGTGATTGTGGCAGCAAGATGGTGTCTCAGGATAGGGAATGAG

hide sequence

RefSeq Acc Id:

XM_039112735 ⟹ XP_038968663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	107,155,008 - 107,220,304 (-)	NCBI
mRatBN7.2	6	101,423,754 - 101,488,821 (-)	NCBI

RefSeq Acc Id:

XM_039112736 ⟹ XP_038968664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	107,155,008 - 107,220,304 (-)	NCBI
mRatBN7.2	6	101,423,754 - 101,488,821 (-)	NCBI

RefSeq Acc Id:

XM_039112737 ⟹ XP_038968665

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	107,155,008 - 107,220,304 (-)	NCBI
mRatBN7.2	6	101,423,754 - 101,488,821 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094342	(Get FASTA)	NCBI Sequence Viewer
	XP_006240365	(Get FASTA)	NCBI Sequence Viewer
	XP_038968663	(Get FASTA)	NCBI Sequence Viewer
	XP_038968664	(Get FASTA)	NCBI Sequence Viewer
	XP_038968665	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAO91625	(Get FASTA)	NCBI Sequence Viewer
	EDL81432	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009693
	ENSRNOP00000009693.4
	ENSRNOP00000069168
	ENSRNOP00000069168.3

RefSeq Acc Id:

NP_001094342 ⟸ NM_001100872

- UniProtKB:

A0A0G2JUN9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MESSRSLLGCLASAAAAPPGEDATGAGAEEEEDEEEAAAELGSHATLPYWTAVFEYEAAGEDEL
TLRLGDVVEVLSKDSQVSGDEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGTEDPSCYPPIQ
LLEIDFAELTLEEIIGIGGFGKVYRAFWVGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLK
HPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRVPPDILVNWAVQIARGMNYLHDEAIVP
VIHRDLKSSNILILQKVENGDLSNKTLKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFS
KGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPH
SRPSFSSILDQLTTIEESGFFEMPKDSFHCLQDDWKHEIQEMFDQLRAKEKELRTWEEELTRAA
LQQKNQEELLRRREQELAEREIDILERELNIIIHQLCQEKPRVKKRKGKFRKSRLKLKDGNRIS
LPSDFQHKFTVQASPTMDKRKSLISNRSSPPASPTIIPRLRAIQLTPGESSKTWGRSSVVPKEE
GEEEEKRAPKKKGRTWGPGTLGQKELTSGDEGLKSLVDGYKQWSSSAPNLGKGPRSSPALPGFT
SLMEIEDEDSEGPGSGENHLQHSPNQSYLCIPFPRGEDGDGPSSDGIHEEPTPVNSATSTPQLT
PTNSLKRSGTHHRRCEVALLGCGAVLAATGLGFDLLEAGKCQLLPPEEPEPPAREEKKRREGLF
QRASRPRRSTSPPSRKLFKKEEPMTLLGDPSASLTLLSLSSISECNSTRSLLRSDSDEIVVYEM
PVSPVEAPPLTQCTQNPLVNVRVERFKRDPNQSLTPTHVTLTAPTQPSGHRRTPSDGALKPASV
PPALGSRSPSSNGVSPGPGAGMLKTPSPSRDPGEFPRLPDPNVVFPPTPRRWNTQRDSTLERPK
TLEFLPRPRPSANRQRLDPWWFVSPSHARSASPANSSSTETPSNLDSCFASSSSTVEERPGLPA
LLPLQAGPLPPAERTLLDLDAEGQSQDSTVPLCRAELNAHGPSPYEIQQEFWS

hide sequence

RefSeq Acc Id:	XP_006240365 ⟸ XM_006240303
- Peptide Label:	isoform X3
- UniProtKB:	F1LRA7 (UniProtKB/TrEMBL), A0A0G2JUN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESSRSLLGCLASAAAAPPGEDATGAGAEEEEDEEEAAAELGSHATLPYWTAVFEYEAAGEDEL TLRLGDVVEVLSKDSQVSGDEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGTEDPSCYPPIQ LLEIDFAELTLEEIIGIGGFGKVYRAFWVGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLK HPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRVPPDILVNWAVQIARGMNYLHDEAIVP VIHRDLKSSNILILQKVENGDLSNKTLKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFS KGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPH SRPSFSSILDQLTTIEESGFFEMPKDSFHCLQDDWKHEIQEMFDQLRAKEKELRTWEEELTRAA LQQKNQEELLRRREQELAEREIDILERELNIIIHQLCQEKPRVKKRKGKFRKSRLKLKDGNRIS LPSDFQHKFTVQASPTMDKRKSLISNRSSPPASPTIIPRLRAIQLTPGESSKTWGRSSVVPKEE GEEEEKRAPKKKGRTWGPGTLGQKELTSGDEGSPQRREKANGLSTPSESPHFHLGLKSLVDGYK QWSSSAPNLGKGPRSSPALPGFTSLMEIEDEDSEGPGSGENHLQHSPNQSYLCIPFPRGEDGDG PSSDGIHEEPTPVNSATSTPQLTPTNSLKRSGTHHRRCEVALLGCGAVLAATGLGFDLLEAGKC QLLPPEEPEPPAREEKKRREGLFQRASRPRRSTSPPSRKLFKKEEPMTLLGDPSASLTLLSLSS ISECNSTRSLLRSDSDEIVVYEMPVSPVEAPPLTQCTQNPLVNVRVERFKRDPNQSLTPTHVTL TAPTQPSGHRRTPSDGALKPASVPPALGSRSPSSNGVSPGPGAGMLKTPSPSRDPGEFPRLPDP NVVFPPTPRRWNTQRDSTLERPKTLEFLPRPRPSANRQRLDPWWFVSPSHARSASPANSSSTET PSNLDSCFASSSSTVEERPGLPALLPLQAGPLPPAERTLLDLDAEGQSQDSTVPLCRAELNAHG PSPYEIQQEFWS hide sequence

Ensembl Acc Id:

ENSRNOP00000069168 ⟸ ENSRNOT00000083488

Ensembl Acc Id:

ENSRNOP00000009693 ⟸ ENSRNOT00000009693

RefSeq Acc Id:	XP_038968664 ⟸ XM_039112736
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JUN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968665 ⟸ XM_039112737
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JUN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968663 ⟸ XM_039112735
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JUN9 (UniProtKB/TrEMBL)

Protein Domains

Protein kinase SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LRA7-F1-model_v2	AlphaFold	F1LRA7	1-1100	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694725

Promoter ID:

EPDNEW_R5234

Type:

single initiation site

Name:

Map3k9_1

Description:

mitogen-activated protein kinase kinase kinase 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	105,518,693 - 105,518,753	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562149	AgrOrtholog
BioCyc Gene	G2FUF-36882	BioCyc
Ensembl Genes	ENSRNOG00000007271	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009693	ENTREZGENE
	ENSRNOT00000009693.7	UniProtKB/TrEMBL
	ENSRNOT00000083488	ENTREZGENE
	ENSRNOT00000083488.3	UniProtKB/TrEMBL
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	Kinase-like_dom	UniProtKB/TrEMBL
	MAPKKK9/10/11	UniProtKB/TrEMBL
	MLK1-3_SH3	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
	Ser/Thr_Kinases-Pseudokinases	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
NCBI Gene	500690	ENTREZGENE
PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9	UniProtKB/TrEMBL
	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
	SH3_9	UniProtKB/TrEMBL
PhenoGen	Map3k9	PhenoGen
PIRSF	MAPKKK9_11	UniProtKB/TrEMBL
PRINTS	SH3DOMAIN	UniProtKB/TrEMBL
	TYRKINASE	UniProtKB/TrEMBL
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007271	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
UniProt	A0A0G2JUN9	ENTREZGENE, UniProtKB/TrEMBL
	F1LRA7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Map3k9	mitogen-activated protein kinase kinase kinase 9	RGD1562149_predicted	similar to mixed-lineage protein kinase 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562149_predicted	similar to mixed-lineage protein kinase 1 (predicted)	LOC500690	similar to mixed-lineage protein kinase 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500690	similar to mixed-lineage protein kinase 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - CTD

RGD Manual Annotations