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Gene: Stag2 (STAG2 cohesin complex component) Rattus norvegicus

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Symbol:

Stag2

Name:

STAG2 cohesin complex component

RGD ID:

1562042

Description:

Predicted to enable chromatin binding activity. Predicted to be involved in mitotic spindle assembly and sister chromatid cohesion. Predicted to act upstream of or within stem cell population maintenance. Predicted to be located in mitotic spindle pole and nuclear matrix. Predicted to be part of mitotic cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in Holoprosencephaly 13, X-linked and Mullegama-Klein-Martinez syndrome. Orthologous to human STAG2 (STAG2 cohesin complex component); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cohesin subunit SA-2; LOC313304; RGD1562042; similar to stromal antigen 2; stromal antigen 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STAG2 (STAG2 cohesin complex component)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther
Mus musculus (house mouse):	Stag2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stag2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STAG2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STAG2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stag2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STAG2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STAG2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stag2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stag2 (STAG2 cohesin complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	STAG1 (STAG1 cohesin complex component)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	STAG2 (STAG2 cohesin complex component)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STAG2 (STAG2 cohesin complex component)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stag2 (STAG2 cohesin complex component)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stag2a (stromal antigen 2a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	stag2a (stromal antigen 2a)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	stag2b (stromal antigen 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	IRR1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	IRR1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	SA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	SA-2	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	scc-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stag2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stag2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	125,839,660 - 125,971,209 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	125,840,401 - 125,971,209 (+)	Ensembl				GRCr8
mRatBN7.2	X	120,974,687 - 121,105,677 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	120,974,857 - 121,105,677 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	123,087,011 - 123,217,866 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	126,608,406 - 126,739,229 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	124,202,345 - 124,332,973 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	128,493,603 - 128,624,418 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	128,493,614 - 128,624,418 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	128,583,874 - 128,712,851 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	2,840,102 - 2,970,905 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	120,088,891 - 120,219,108 (+)	NCBI		Celera
Cytogenetic Map	X	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Holoprosencephaly 13, X-linked (ISO)

Mullegama-Klein-Martinez syndrome (ISO)

myelodysplastic syndrome (ISO)

myeloid leukemia (ISO)

myeloid leukemia associated with Down Syndrome (ISO)

Neurodevelopmental Disorders (ISO)

transitional cell carcinoma (ISO)

urinary bladder cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

alpha-pinene (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

clorgyline (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

decabromodiphenyl ether (EXP,ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

Echimidine (ISO)

elemental selenium (ISO)

endosulfan (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glafenine (EXP)

glucose (ISO)

Lasiocarpine (ISO)

methapyrilene (ISO)

methimazole (EXP)

monocrotaline (ISO)

ochratoxin A (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

riddelliine (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

topotecan (EXP)

Tributyltin oxide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

chromosome segregation (IEA)

mitotic spindle assembly (IEA,ISO)

sister chromatid cohesion (IBA,IEA,ISO)

stem cell population maintenance (ISO)

Cellular Component

chromatin (IBA,IEA,ISO)

chromosome (IEA)

chromosome, centromeric region (IEA)

cohesin complex (IBA,IEA,ISO)

fibrillar center (IEA,ISO)

mitotic cohesin complex (IEA,ISO)

mitotic spindle pole (IEA,ISO)

nuclear matrix (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

chromatin binding (IBA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cell cycle pathway, mitotic (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11590136	PMID:15917200	PMID:16682347	PMID:19946888	PMID:20720539	PMID:22415368	PMID:22780989	PMID:23242214	PMID:23920377	PMID:28296084	PMID:29263825

Genomics

Comparative Map Data

Stag2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	125,839,660 - 125,971,209 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	125,840,401 - 125,971,209 (+)	Ensembl				GRCr8
mRatBN7.2	X	120,974,687 - 121,105,677 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	120,974,857 - 121,105,677 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	123,087,011 - 123,217,866 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	126,608,406 - 126,739,229 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	124,202,345 - 124,332,973 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	128,493,603 - 128,624,418 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	128,493,614 - 128,624,418 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	128,583,874 - 128,712,851 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	2,840,102 - 2,970,905 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	120,088,891 - 120,219,108 (+)	NCBI		Celera
Cytogenetic Map	X	q35	NCBI

STAG2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	123,960,560 - 124,102,656 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	123,960,212 - 124,422,664 (+)	Ensembl			hg38	GRCh38
GRCh37	X	123,094,410 - 123,236,506 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	122,922,156 - 123,064,187 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	122,821,123 - 122,961,881	NCBI
Celera	X	123,479,289 - 123,621,302 (+)	NCBI		Celera
Cytogenetic Map	X	q25	NCBI
HuRef	X	112,477,430 - 112,618,677 (+)	NCBI		HuRef
CHM1_1	X	123,005,854 - 123,147,859 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	122,270,973 - 122,413,073 (+)	NCBI		T2T-CHM13v2.0

Stag2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	41,238,172 - 41,366,063 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	41,238,194 - 41,366,062 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	42,149,297 - 42,277,186 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	42,149,317 - 42,277,185 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	39,502,589 - 39,630,352 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	38,437,644 - 38,520,801 (+)	NCBI		MGSCv36	mm8
Celera	X	29,725,317 - 29,852,205 (+)	NCBI		Celera
Cytogenetic Map	X	A4	NCBI
cM Map	X	23.19	NCBI

Stag2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955473	10,626,626 - 10,709,167 (-)	Ensembl
ChiLan1.0	NW_004955473	10,620,264 - 10,765,806 (-)	NCBI	ChiLan1.0	ChiLan1.0

STAG2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	123,430,792 - 123,574,279 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	123,434,900 - 123,577,891 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	113,150,853 - 113,293,395 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	123,329,547 - 123,469,475 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	123,389,162 - 123,472,474 (+)	Ensembl			panPan2	panpan1.1

STAG2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	95,397,174 - 95,532,716 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	95,396,870 - 95,531,133 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	81,463,787 - 81,600,314 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	97,180,536 - 97,317,088 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	97,181,684 - 97,317,091 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	94,612,633 - 94,748,876 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	96,368,835 - 96,505,478 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	96,158,221 - 96,294,739 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stag2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	94,352,368 - 94,478,963 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	6,508,532 - 6,632,627 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	6,508,539 - 6,635,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STAG2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	101,478,247 - 101,617,563 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	101,476,117 - 101,617,405 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	116,293,177 - 116,433,500 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STAG2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	36,695,879 - 36,833,587 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stag2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624797	2,719,508 - 2,794,379 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624797	2,659,785 - 2,794,168 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stag2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	108,989,496 - 109,112,533 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stag2
801 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	608
Count of miRNA genes:	262
Interacting mature miRNAs:	348
Transcripts:	ENSRNOT00000044240
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	120028026	141353710	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	120028026	141353710	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	118973754	157758123	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Markers in Region

DXS7906

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	120,977,573 - 120,977,655 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,496,331 - 128,496,412	NCBI	Rnor6.0
Rnor_5.0	X	128,586,591 - 128,586,672	UniSTS	Rnor5.0
RGSC_v3.4	X	2,968,108 - 2,968,189	UniSTS	RGSC3.4
Celera	X	120,091,563 - 120,091,644	UniSTS
Cytogenetic Map	X	q11	UniSTS

stSG633685

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	121,103,852 - 121,104,991 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,622,594 - 128,623,732	NCBI	Rnor6.0
Rnor_5.0	X	128,711,027 - 128,712,165	UniSTS	Rnor5.0
RGSC_v3.4	X	2,840,788 - 2,841,926	UniSTS	RGSC3.4
Celera	X	120,217,284 - 120,218,422	UniSTS
Cytogenetic Map	X	q11	UniSTS

ECD13650

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	120,975,484 - 120,976,071 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,494,242 - 128,494,828	NCBI	Rnor6.0
Rnor_5.0	X	128,584,502 - 128,585,088	UniSTS	Rnor5.0
RGSC_v3.4	X	2,969,692 - 2,970,278	UniSTS	RGSC3.4
Celera	X	120,089,519 - 120,090,105	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN51965

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	120,977,508 - 120,977,759 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,496,266 - 128,496,516	NCBI	Rnor6.0
Rnor_5.0	X	128,586,526 - 128,586,776	UniSTS	Rnor5.0
RGSC_v3.4	X	2,968,004 - 2,968,254	UniSTS	RGSC3.4
Celera	X	120,091,498 - 120,091,748	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN51966

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	120,977,746 - 120,978,004 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,496,504 - 128,496,761	NCBI	Rnor6.0
Rnor_5.0	X	128,586,764 - 128,587,021	UniSTS	Rnor5.0
RGSC_v3.4	X	2,967,759 - 2,968,016	UniSTS	RGSC3.4
Celera	X	120,091,736 - 120,091,993	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN51964

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	120,977,260 - 120,977,527 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,496,018 - 128,496,284	NCBI	Rnor6.0
Rnor_5.0	X	128,586,278 - 128,586,544	UniSTS	Rnor5.0
RGSC_v3.4	X	2,968,236 - 2,968,502	UniSTS	RGSC3.4
Celera	X	120,091,250 - 120,091,516	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN52332

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	121,057,921 - 121,058,139 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,576,670 - 128,576,887	NCBI	Rnor6.0
Rnor_5.0	X	128,665,102 - 128,665,319	UniSTS	Rnor5.0
RGSC_v3.4	X	2,887,633 - 2,887,850	UniSTS	RGSC3.4
Celera	X	120,171,330 - 120,171,547	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN52504

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	121,095,306 - 121,095,580 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,614,048 - 128,614,321	NCBI	Rnor6.0
Rnor_5.0	X	128,702,481 - 128,702,754	UniSTS	Rnor5.0
RGSC_v3.4	X	2,850,199 - 2,850,472	UniSTS	RGSC3.4
Celera	X	120,208,738 - 120,209,011	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN52551

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	121,104,358 - 121,104,616 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,623,100 - 128,623,357	NCBI	Rnor6.0
Rnor_5.0	X	128,711,533 - 128,711,790	UniSTS	Rnor5.0
RGSC_v3.4	X	2,841,163 - 2,841,420	UniSTS	RGSC3.4
Celera	X	120,217,790 - 120,218,047	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN52552

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	121,104,600 - 121,104,853 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,623,342 - 128,623,594	NCBI	Rnor6.0
Rnor_5.0	X	128,711,775 - 128,712,027	UniSTS	Rnor5.0
RGSC_v3.4	X	2,840,926 - 2,841,178	UniSTS	RGSC3.4
Celera	X	120,218,032 - 120,218,284	UniSTS
Cytogenetic Map	X	q11	UniSTS

REN52553

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	121,104,812 - 121,105,074 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	128,623,554 - 128,623,815	NCBI	Rnor6.0
Rnor_5.0	X	128,711,987 - 128,712,248	UniSTS	Rnor5.0
RGSC_v3.4	X	2,840,705 - 2,840,966	UniSTS	RGSC3.4
Celera	X	120,218,244 - 120,218,505	UniSTS
Cytogenetic Map	X	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC111718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044240 ⟹ ENSRNOP00000044231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	125,840,401 - 125,971,209 (+)	Ensembl
mRatBN7.2 Ensembl	X	120,974,857 - 121,105,677 (+)	Ensembl
Rnor_6.0 Ensembl	X	128,493,614 - 128,624,418 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082970 ⟹ ENSRNOP00000073004

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	125,841,733 - 125,971,128 (+)	Ensembl
mRatBN7.2 Ensembl	X	120,974,857 - 121,105,677 (+)	Ensembl
Rnor_6.0 Ensembl	X	128,550,178 - 128,622,646 (+)	Ensembl

RefSeq Acc Id:

NM_001173507 ⟹ NP_001166978

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,840,401 - 125,971,209 (+)	NCBI
mRatBN7.2	X	120,974,857 - 121,105,677 (+)	NCBI
Rnor_6.0	X	128,493,614 - 128,624,418 (+)	NCBI
Rnor_5.0	X	128,583,874 - 128,712,851 (+)	NCBI
Celera	X	120,088,891 - 120,219,108 (+)	NCBI

Sequence:

show sequence

AGAGCGAACACCCCAAACAATCCCGAAGCGCCACCAAAAAAAAAAAAAAAAAAAAAAGAAAAGA
AAAAAGAGAAAAGAAAAAAGAAAAAAAGAAAAGAAAAAAATAGAAAAAAAGAAAAGAGAAAAAA
ACAGGAAAAAAAAAGCACCCTGCCGGATCCGACCGCCACTTTCAACCCCCCCCCCCCCACGGCT
CTAGACCCGCGGGAGCTTCCGTCCCTCAGTAGAATTCAAGGGTGTAAAGAAGAGGAAGGGGGAA
AAAATCTTGTACCAGCCCAGGGGCGAAGAAGCCCCCGGCCTGAGAAAGAAGGAGTGGGGGAGGC
CAACAGTCTCCTCGCTGCCTCTGTAGACGCTGAGGGGGGAGGAACTGTCTTTCTTAGAGGAAGC
ACACTGTCTTTTATTCACATAAATATATGAATATATTTCTGACATTGGGGTGATCCAGAAGATG
ATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTGCAGGAGTCAGAAAC
ACATTTTTCTTCTGACACAGATTTTGAAGACATTGAAGGAAAAAATCAGAAGCAAGGCAAAGGC
AAAACTTGTAAAAAAGGCAAGAAGGGTCCAGCAGAGAAGGGTAAAAGTGGAAATGGAGGAGGAA
AACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCATCAGCAGAATGGAGTTGAAAACATGAT
GTTGTTTGAAGTTGTAAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAA
TCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAG
GCTGCAAAGGAGTCGTCACAGCAGAGATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAA
AATGACAGAAGAATTCGACGAGGATAGTGGGGATTACCCACTAACCATGGCTGGTCCTCAGTGG
AAGAAGTTCAAGTCCAGCTTCTGTGAGTTCATTGGTGTATTAGTACGGCAATGTCAATATAGTA
TCATATATGATGAGTACATGATGGACACTGTCATTTCACTTCTTACTGGATTGTCTGACTCCCA
AGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACTGCTTTGGTAAAT
GTGGCACTAAATCTTAGCATTAATATGGATAACACACAAAGACAGTATGAGGCAGAACGGAATA
AAATGATTGGAAAACGAGCCAATGAAAGGCTAGAACTCCTGTTACAAAAGCGTAAAGAGCTTCA
GGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGA
TACAGGGATGCAATAGCTGAAATCAGAGCTATATGCATTGAAGAGATTGGCATTTGGATGAAGA
TGTATAGTGATGCCTTCCTTAATGACAGCTATTTAAAATATGTTGGTTGGACTATGCATGATAA
GCAAGGTGAGGTAAGACTCAAGTGTCTTACTGCTTTACAAGGGCTTTACTATAACAAAGAGCTT
AACTCCAAACTGGAACTGTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACA
AAGAATATGATGTTGCAGTACAAGCAATAAAGTTACTCACTCTTGTTTTACAGAGTAGTGAAGA
AGTTCTAACTGCAGAAGACTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTA
GCAGTTGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGCCGTAGAGATCCAGAAGAGGATG
GAATAATGAAAAGAAGGGGAAGACAAGGTCCAAATGCCAATCTTGTCAAGACTTTGGTGTTTTT
CTTCTTGGAAAGTGAGTTACATGAACATGCAGCATACCTTGTGGATAGCATGTGGGATTGTGCT
ACTGAGCTACTGAAAGACTGGGAATGTATGAATAGCTTGTTATTAGAGGAGCCTCTCAGTGGAG
AGGAAGCTCTAACAGACAGACAAGAGAGTGCTTTGATTGAAATAATGCTTTGTACTATTAGACA
AGCAGCTGAATGTCATCCGCCTGTGGGAAGAGGGACAGGAAAAAGGGTGCTAACAGCAAAGGAG
AAGAAGACACAGTTGGATGACAGAACAAGAATCACTGAGCTGTTTGCTGTGGCCCTTCCACAAT
TATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACCAATTTGTTGCAGTTACCTCAATACTT
TGACTTGGAGATCTACACCACTGGACGATTGGAAAAGCACTTGGATGCCTTATTGCGTCAGATC
CGAAATATTGTAGAGAAGCACACAGACACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATG
CATTATGTAATGAAGAGTTCACGATCTTCAACAGAGTAGATATTTCAAGAAGTCAGCTGATAGA
TGAACTGGCAGATAAATTTAACCGGCTTCTGGAAGATTTTCTGCAAGAGGGAGAAGAACCTGAC
GAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATG
ATCTTTCAAAGTGGGATTTGTTTGCTTGTAATTACAAACTCTTGAAAACCGGAATTGAAAATGG
AGATATGCCTGAGCAGATCGTTATTCACGCACTGCAGTGTGCTCACTATGTAATCCTTTGGCAG
CTTGCTAAGATCACTGAAAGCACTTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAGATGA
GGGTATTTTGCCAGATATGTCAACATTACTTAACCAACGTGAATACTACTGTTAAGGAACAGGC
CTTCACTATTCTGTGTGATATTTTGATGATCTTCAGTCACCAGATTATGTCTGGAGGGCGTGAC
ATGTTAGAGCCATTAGTTTATACTCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTT
TGGATCATGTCTTCATTGAACAGGATGATGATAGTAATAGTGCAGATGGTCAGCAGGAGGATGA
AGCCAGTAAAATTGAAGCTTTGCATAAGAGGAGAAATTTACTTGCAGCATTTTGTAAGCTAATT
GTATATACAGTGGTGGAGATGAACACAGCTGCGGATATCTTCAAGCAGTATATGAAGTATTATA
ACGATTATGGCGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATTGACAAAATTCAGTG
TGCCAAGACTCTTATTCTCAGTTTGCAGCAGCTTTTTAATGAGATGATACAAGAAAATGGCTAT
AACTTTGATAGATCATCCTCAACATTTAGCGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAA
CTTTTGGACTTGATCAGTTGAAAACCAGAGAAGCCATTGCCATGCTGCACAAAGATGGCATAGA
ATTTGCTTTTAAGGAGCCTAATCCACAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTT
GATATTCTCAGTGAATTTTCTTCTAAACTGCTCCGACAAGATAAAAGAACAGTGTATGTTTATT
TGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAAGATGTATGGCTTCCTCTGATGTC
TTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATGAGC
AGTCGGGGATCAACTGTACGGAGTAAAAAATCAAAACCATCTACAGGGAAACGGAAAGTGCTTG
AAGGCATGCAACTAGCACTCCCTGAAGAAAGCAGTAGCAGTGACAGTATGTGGTTGAGCAGAGA
GCAGACACTGCACACCCCTGTTATGATGCAGACACCGCAGCTCACCTCCACTATTATGAGAGAA
CCGAAAAGGTTACGGCCTGAAGATAGCTTCATGAGTGTCTATCCGATGCAGACAGAACACCATC
AAACTCCTCTGGATTACAATCAGCGTGGTACAAGCATAATGGAGGATGACGAAGAGCCGATTGT
TGAAGATGTTATGATGTCCTCAGAAGGAAGGATTGAGGATCTTAATGAGGGAATGGACTTTGAC
ACCATGGATATAGACCTGCCACCATCAAAGAATAGAAGAGAGAGAACAGAACTGAAGCCTGATT
TCTTTGATCCTGCTTCAATTATGGATGAATCAGTTCTTGGCGTGTCAATGTTTTAATACCAGTA
CACATTAAATCTGTGATGAAGTCATTTTCTAAGTGGAAGAGGAAATTTTAAAATAAAGTGTGGT
AGATACAGTGAAATTCTGTACAGATTTTTCTCTAAGGAGAATATAACATGCTTATGCTTACCAA
GATGAAGTGCATTGAGGGGCAGTTTTGTTTGCCTGAAAAAATAAAGGACAAGTAAACAATTTGA
TGATAAGCTACAGTTTTTCTTAGAAAGTAAATATTTTATTTATGCGCTGTTAGTTGGCTTTTAA
AGGAATTATTTCATGCTTTTTTAAAAAAAAATATAACAATCTGAAGAAGTATTTGGTACAGATA
AGAATCTTCTCACATTTATTTACTGGTTGTACTAAATAATGATGACCTCTGCTGGATTTCTGTT
TACATCCATGAAACAAAAGTTAAGGATGGATTTATTCCCTGACCCTGAAATTGTAGGATAGAAT
TGTTTTTAGCATTCTAAATTTAAATGCTTAAAACATCAATCAACAAACCTTTGTTTTAAATGTT
GTAATTGTGGAAAAAAGTTAAACTTATAAGCAGAACTTTTACAATTTTTTCATCTAAAATGTAT
TTTAAGATATTTTTAAAATCCAAGAGCTTCTGTATACTTTTCAGAAATATCCAGATGCAGTGAA
CTGCCAGAAGGTAACCAGTCTCGAACACGCTTATCCCACAGCAGCCCGAAAGTTTGCTTGTCCT
TTAAGATAAAACGTAACGTTGTGATGTTCCTTCCAGTAGTGCCACTGTATTTTGTCTCCAAATA
AAGAAGCTTATTGTAGTATGTTTGCAGAAAATTTAAACAAAAATTATACAGCTTATTAGAGTGT
GGGAATAGGGATCTAAATTTTAAATAAAATTATATATATATATAAATTGGTGCTGATTTTATAA
TTGCGCAGTTTGTTTAGTTTTTTCTTACTTTTAAATTCCAACTTAAAATTATGAGGTTTCAGAA
ATATATTGAAAGTTTAACAATGTTTAAAAATAGAAAAGCATGACTGTTCATGCTTTAAAATGAT
TTTTAAATTTGTATTTTATATTGTTTTATCTATCTGTCTTTGCAAGCAGTCTTCAGGTTAAAGA
TACTTCTAACAGGTTACAGTACATTTCCTCTGTATGTAAATTAGATGGGATAATAGAATTCATA
ACCCATAATATTCTTTGAAAGCTAAGCTTTAAACTTCATTTTATGTCCTTTCACAAGTGAATTA
GTTTAAAACAGAAAGTGGCCACTTGCCATTTTGACATCAACTCATTTTGCGAGGCTTAGGCAGC
TAGACATCGTTTAAAACAAAATATTAACTTATATTACATGTATATCTATCTTTTGTCAGTCGTC
TCTCAGTTCTTGAGGTATATTATTTTAATCATTCCATGCCTTAATATGCTTGCAATACAAGAAT
ATCTTCAGATGTGTGAATACCAAAAGGTTTCTGGTTTTTCAAGTCAGGAAATCAACAAGCATTG
GGCTGTGGTAGCCAAAAAACCATAGGTTAAATGAAAGACCACAAAATACATTTATTTTATTAAT
TCATGGTTAACAAATAAAACCAGACCTGTCTAACATACTTTCCATCAACAAACATTGTTATGTG
CAAACGTATTGCATATGTTCTTTTACACACCACTGCATTTCCTACAACTGCTGAGAGGACTGTA
TATATGATTTGAAACCTAAGTTGATTTTTTTCTCACTCTTGAAAGGAGTATTTCTTTGTGAAAG
CAGTTCTTCCAGCTTTGTTTTGAACCAGCTAAAATGTTTTCTCTATTACTCTAACCTGTTGTCC
TCCACATTCTATTGTCCTAATTGTACTGTTTGCTGATTTGTATTTATGTCTTGAGACAGTAACT
TTTTGAATAAAAATAAACCTACGGTATGTTGTATGCTTTATCTCTTGTAATCAAAAGGGGAGGG
TGGTTCTAAATGCTTTATGAATTATATTTATTATCACACTTT

hide sequence

RefSeq Acc Id:

XM_006257503 ⟹ XP_006257565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,843,199 - 125,971,129 (+)	NCBI
mRatBN7.2	X	120,977,640 - 121,103,898 (+)	NCBI
Rnor_6.0	X	128,495,270 - 128,624,343 (+)	NCBI
Rnor_5.0	X	128,583,874 - 128,712,851 (+)	NCBI

Sequence:

show sequence

GTGCTGCTTTTTCGTTCCCACCCCCACCCGCACTGTCTTTCTCAAGGCACGAACTGAGCTGATC
CTTACCCCAGGTAGGCAGCCTCTGTTTTCCCTCCACACTTTTATTCTTGCTTGAAGGCGACTTT
CTCTTTTCTTCTCTCACGTATCCGGAGATCTGCGGACTACAATTTTAGGAGGAAAAGGGTCGGA
TGGGCCATGGGAGAGAGAAGGTGTGGGAAACAGCATCAAGTAGTTCCGCAAAACTTTGAGCCCC
GTTCCCATTTTCTTCTGGCCTAGAATTGTAAACGTATTGTTGATTTCGGCCTTTTTTCCCCTTT
CCCTCCCGCCGCGACAATGTCTTGTTTTGCCTTTAGTTTTGATTTTTATTATTATTATTTTTTT
TGATAAACCGCTGTACTTCGACATTTAGTTTCTGCTCCTCGGTATTACATGTCATTTTATTTTT
AATCCTCAACGGTAATAGGTTATCGTGTGATTTTTCGTGCTTTGGTGCTGGACTTGAATTTTTA
ATACTGCATTAGTAGTTTCATCCGGTCTGGGAGACTTTCTCCTCCGTGGCCTAGGATGTTTTTT
TTTTTTTTTATGTTGTTGCCTGCCCCCTCCCTCTCCCTCCTTTCTTCTGGATGTAGTTTTTAAA
TTGAGGGTCGTGTTTTTTGATTAAATGATGATTTCTAGCTTCTATGCTATGTCTATCAGAAACT
TTTGATCTGTGAGGTTAGGTTTAAGTAAAGGAGACGCTTGTGTTGGTTTGCAATGGTTCCTTAA
AATGCGCGGGCCGCCTCCTCGACCCTGGTAAAGCCCCATCTTCCCTTCACACTGGAGTGTAAAT
TCCGTACCCCTTTCTCCCACGGACCGCCTTATTTCACAGCAGCCACACCCTGTATATATGTCTC
TGTGGATTGGACTCATTATCAGCTTAATTTAGTGACTTAAACCACCATGATGGGACTTCCTTAA
GCACGAAGCTTCTTTTCCTGTTTAGTCCTGGTGGTTAGTGTCGAAAGAGGAATAATCGAGGTTT
CTTAATGAAACCTGGTGAGGTCCAAGCATTGCCTTTTTTCTGTTGTCTTTTTTCCTACTCCGGG
CTGTTGGCGGTGTCAGCACCGCTGCTGGGGGCGGGGGGTGGAGGGGAGAAAGAGTCGGGTTACC
GAAGTGCGTCATTCCTGGCTCTAGCAAGGCCTGCTCGGGAGCTTGCTGGTGTTTGTTACTGTCC
TCCAGCACTTTCCTGCCAACCTTCTCTCTCTGCGTATTGGTTAGGAGCAAAAGCAGGAGGCGGT
CTCCTAATTCTGTCTGGAGCCCAGTGCATTGCATTTAAGGGTATATGTGAACTTATTTTTTTTT
CTGATGGCCCTGGAAAGTGGATACATTTCTGTTTAACGACATGCAATTCAGGAACTGTCTTTCT
TAGAGGAAGCACACTGTCTTTTATTCACATAAATATATGAATATATTTCTGACATTGGGGTGAT
CCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTGCAGG
AGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGACATTGAAGGAAAAAATCAGAAGCA
AGGCAAAGGCAAAACTTGTAAAAAAGGCAAGAAGGGTCCAGCAGAGAAGGGTAAAAGTGGAAAT
GGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCATCAGCAGAATGGAGTTG
AAAACATGATGTTGTTTGAAGTTGTAAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGA
TTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATT
CAGTGTTCAGGCTGCAAAGGAGTCGTCACAGCAGAGATGTTTAGACATATGCAGAACTCTGAGA
TAATTCGAAAAATGACAGAAGAATTCGACGAGGATAGTGGGGATTACCCACTAACCATGGCTGG
TCCTCAGTGGAAGAAGTTCAAGTCCAGCTTCTGTGAGTTCATTGGTGTATTAGTACGGCAATGT
CAATATAGTATCATATATGATGAGTACATGATGGACACTGTCATTTCACTTCTTACTGGATTGT
CTGACTCCCAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACTGC
TTTGGTAAATGTGGCACTAAATCTTAGCATTAATATGGATAACACACAAAGACAGTATGAGGCA
GAACGGAATAAAATGATTGGAAAACGAGCCAATGAAAGGCTAGAACTCCTGTTACAAAAGCGTA
AAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTT
TGTACATAGATACAGGGATGCAATAGCTGAAATCAGAGCTATATGCATTGAAGAGATTGGCATT
TGGATGAAGATGTATAGTGATGCCTTCCTTAATGACAGCTATTTAAAATATGTTGGTTGGACTA
TGCATGATAAGCAAGGTGAGGTAAGACTCAAGTGTCTTACTGCTTTACAAGGGCTTTACTATAA
CAAAGAGCTTAACTCCAAACTGGAACTGTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATG
ACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAGTTACTCACTCTTGTTTTACAGA
GTAGTGAAGAAGTTCTAACTGCAGAAGACTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCA
CCGGCCAGTAGCAGTTGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGCCGTAGAGATCCA
GAAGAGGATGGAATAATGAAAAGAAGGGGAAGACAAGGTCCAAATGCCAATCTTGTCAAGACTT
TGGTGTTTTTCTTCTTGGAAAGTGAGTTACATGAACATGCAGCATACCTTGTGGATAGCATGTG
GGATTGTGCTACTGAGCTACTGAAAGACTGGGAATGTATGAATAGCTTGTTATTAGAGGAGCCT
CTCAGTGGAGAGGAAGCTCTAACAGACAGACAAGAGAGTGCTTTGATTGAAATAATGCTTTGTA
CTATTAGACAAGCAGCTGAATGTCATCCGCCTGTGGGAAGAGGGACAGGAAAAAGGGTGCTAAC
AGCAAAGGAGAAGAAGACACAGTTGGATGACAGAACAAGAATCACTGAGCTGTTTGCTGTGGCC
CTTCCACAATTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACCAATTTGTTGCAGTTAC
CTCAATACTTTGACTTGGAGATCTACACCACTGGACGATTGGAAAAGCACTTGGATGCCTTATT
GCGTCAGATCCGAAATATTGTAGAGAAGCACACAGACACAGATGTTTTGGAAGCATGTTCTAAA
ACTTACCATGCATTATGTAATGAAGAGTTCACGATCTTCAACAGAGTAGATATTTCAAGAAGTC
AGCTGATAGATGAACTGGCAGATAAATTTAACCGGCTTCTGGAAGATTTTCTGCAAGAGGGAGA
AGAACCTGACGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCAT
AATGCCCATGATCTTTCAAAGTGGGATTTGTTTGCTTGTAATTACAAACTCTTGAAAACCGGAA
TTGAAAATGGAGATATGCCTGAGCAGATCGTTATTCACGCACTGCAGTGTGCTCACTATGTAAT
CCTTTGGCAGCTTGCTAAGATCACTGAAAGCACTTCTACAAAGGAGGACTTGCTGCGTTTAAAG
AAACAGATGAGGGTATTTTGCCAGATATGTCAACATTACTTAACCAACGTGAATACTACTGTTA
AGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGTCACCAGATTATGTCTGG
AGGGCGTGACATGTTAGAGCCATTAGTTTATACTCCTGATTCTTCATTGCAGTCTGAGTTGCTC
AGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAGTAATAGTGCAGATGGTCAGC
AGGAGGATGAAGCCAGTAAAATTGAAGCTTTGCATAAGAGGAGAAATTTACTTGCAGCATTTTG
TAAGCTAATTGTATATACAGTGGTGGAGATGAACACAGCTGCGGATATCTTCAAGCAGTATATG
AAGTATTATAACGATTATGGCGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATTGACA
AAATTCAGTGTGCCAAGACTCTTATTCTCAGTTTGCAGCAGCTTTTTAATGAGATGATACAAGA
AAATGGCTATAACTTTGATAGATCATCCTCAACATTTAGCGGCATAAAAGAACTTGCTCGACGT
TTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACCAGAGAAGCCATTGCCATGCTGCACAAAG
ATGGCATAGAATTTGCTTTTAAGGAGCCTAATCCACAAGGGGAGAGCCATCCACCTTTAAATTT
GGCATTTCTTGATATTCTCAGTGAATTTTCTTCTAAACTGCTCCGACAAGATAAAAGAACAGTG
TATGTTTATTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAAGATGTATGGCTTC
CTCTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAG
TGGAATGAGCAGTCGGGGATCAACTGTACGGAGTAAAAAATCAAAACCATCTACAGGGAAACGG
AAAGTGCTTGAAGGCATGCAACTAGCACTCCCTGAAGAAAGCAGTAGCAGTGACAGTATGTGGT
TGAGCAGAGAGCAGACACTGCACACCCCTGTTATGATGCAGACACCGCAGCTCACCTCCACTAT
TATGAGAGAACCGAAAAGGTTACGGCCTGAAGATAGCTTCATGAGTGTCTATCCGATGCAGACA
GAACACCATCAAACTCCTCTGGATTACAACACGCAGGTAACATGGATGTTAGCTCAAAGACAAC
AAGAGGAAGCAAGGCAACAGCAGGAGAGAGCAGCAATGAGCTATGTTAAACTGCGAACTAATCT
TCAGCATGCCATTCAGCGTGGTACAAGCATAATGGAGGATGACGAAGAGCCGATTGTTGAAGAT
GTTATGATGTCCTCAGAAGGAAGGATTGAGGATCTTAATGAGGGAATGGACTTTGACACCATGG
ATATAGACCTGCCACCATCAAAGAATAGAAGAGAGAGAACAGAACTGAAGCCTGATTTCTTTGA
TCCTGCTTCAATTATGGATGAATCAGTTCTTGGCGTGTCAATGTTTTAATACCAGTACACATTA
AATCTGTGATGAAGTCATTTTCTAAGTGGAAGAGGAAATTTTAAAATAAAGTGTGGTAGATACA
GTGAAATTCTGTACAGATTTTTCTCTAAGGAGAATATAACATGCTTATGCTTACCAAGATGAAG
TGCATTGAGGGGCAGTTTTGTTTGCCTGAAAAAATAAAGGACAAGTAAACAATTTGATGATAAG
CTACAGTTTTTCTTAGAAAGTAAATATTTTATTTATGCGCTGTTAGTTGGCTTTTAAAGGAATT
ATTTCATGCTTTTTTAAAAAAAAATATAACAATCTGAAGAAGTATTTGGTACAGATAAGAATCT
TCTCACATTTATTTACTGGTTGTACTAAATAATGATGACCTCTGCTGGATTTCTGTTTACATCC
ATGAAACAAAAGTTAAGGATGGATTTATTCCCTGACCCTGAAATTGTAGGATAGAATTGTTTTT
AGCATTCTAAATTTAAATGCTTAAAACATCAATCAACAAACCTTTGTTTTAAATGTTGTAATTG
TGGAAAAAAGTTAAACTTATAAGCAGAACTTTTACAATTTTTTCATCTAAAATGTATTTTAAGA
TATTTTTAAAATCCAAGAGCTTCTGTATACTTTTCAGAAATATCCAGATGCAGTGAACTGCCAG
AAGGTAACCAGTCTCGAACACGCTTATCCCACAGCAGCCCGAAAGTTTGCTTGTCCTTTAAGAT
AAAACGTAACGTTGTGATGTTCCTTCCAGTAGTGCCACTGTATTTTGTCTCCAAATAAAGAAGC
TTATTGTAGTATGTTTGCAGAAAATTTAAACAAAAATTATACAGCTTATTAGAGTGTGGGAATA
GGGATCTAAATTTTAAATAAAATTATATATATATATAAATTGGTGCTGATTTTATAATTGCGCA
GTTTGTTTAGTTTTTTCTTACTTTTAAATTCCAACTTAAAATTATGAGGTTTCAGAAATATATT
GAAAGTTTAACAATGTTTAAAAATAGAAAAGCATGACTGTTCATGCTTTAAAATGATTTTTAAA
TTTGTATTTTATATTGTTTTATCTATCTGTCTTTGCAAGCAGTCTTCAGGTTAAAGATACTTCT
AACAGGTTACAGTACATTTCCTCTGTATGTAAATTAGATGGGATAATAGAATTCATAACCCATA
ATATTCTTTGAAAGCTAAGCTTTAAACTTCATTTTATGTCCTTTCACAAGTGAATTAGTTTAAA
ACAGAAAGTGGCCACTTGCCATTTTGACATCAACTCATTTTGCGAGGCTTAGGCAGCTAGACAT
CGTTTAAAACAAAATATTAACTTATATTACATGTATATCTATCTTTTGTCAGTCGTCTCTCAGT
TCTTGAGGTATATTATTTTAATCATTCCATGCCTTAATATGCTTGCAATACAAGAATATCTTCA
GATGTGTGAATACCAAAAGGTTTCTGGTTTTTCAAGTCAGGAAATCAACAAGCATTGGGCTGTG
GTAGCCAAAAAACCATAGGTTAAATGAAAGACCACAAAATACATTTATTTTATTAATTCATGGT
TAACAAATAAAACCAGACCTGTCTAACATACTTTCCATCAACAAACATTGTTATGTGCAAACGT
ATTGCATATGTTCTTTTACACACCACTGCATTTCCTACAACTGCTGAGAGGACTGTATATATGA
TTTGAAACCTAAGTTGATTTTTTTCTCACTCTTGAAAGGAGTATTTCTTTGTGAAAGCAGTTCT
TCCAGCTTTGTTTTGAACCAGCTAAAATGTTTTCTCTATTACTCTAACCTGTTGTCCTCCACAT
TCTATTGTCCTAATTGTACTGTTTGCTGATTTGTATTTATGTCTTGAGACAGTAACTTTTTGAA
TAAAAATAAACCTACGGTATGTTG

hide sequence

RefSeq Acc Id:

XM_008773521 ⟹ XP_008771743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,839,660 - 125,971,129 (+)	NCBI
mRatBN7.2	X	120,974,687 - 121,105,597 (+)	NCBI
Rnor_6.0	X	128,493,603 - 128,622,639 (+)	NCBI

Sequence:

show sequence

CAAGTCGCTGAAGAGCGAACACCCCAAACAATCCCGAAGCGCCACCAAAAAAAAAAAAAAAAAA
AAAAGAAAAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAAAAGAAAAAAATAGAAAAAAAGAA
AAGAGAAAAAAACAGGAAAAAAAAAGCACCCTGCCGGATCCGACCGCCACTTTCAACCCCCCCC
CCCCCACGGCTCTAGACCCGCGGGAGCTTCCGTCCCTCAGTAGAATTCAAGGGTGTAAAGAAGA
GGAAGGGGGAAAAAATCTTGTACCAGCCCAGGGGCGAAGAAGCCCCCGGCCTGAGAAAGAAGGA
GTGGGGGAGGCCAACAGTCTCCTCGCTGCCTCTGTAGACGCTGAGGGGGGAGGAACTGTCTTTC
TTAGAGGAAGCACACTGTCTTTTATTCACATAAATATATGAATATATTTCTGACATTGGGGTGA
TCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTGCAG
GAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGACATTGAAGGAAAAAATCAGAAGC
AAGGCAAAGGCAAAACTTGTAAAAAAGGCAAGAAGGGTCCAGCAGAGAAGGGTAAAAGTGGAAA
TGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCATCAGCAGAATGGAGTT
GAAAACATGATGTTGTTTGAAGTTGTAAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATG
ATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTAT
TCAGTGTTCAGGCTGCAAAGGAGTCGTCACAGCAGAGATGTTTAGACATATGCAGAACTCTGAG
ATAATTCGAAAAATGACAGAAGAATTCGACGAGGATAGTGGGGATTACCCACTAACCATGGCTG
GTCCTCAGTGGAAGAAGTTCAAGTCCAGCTTCTGTGAGTTCATTGGTGTATTAGTACGGCAATG
TCAATATAGTATCATATATGATGAGTACATGATGGACACTGTCATTTCACTTCTTACTGGATTG
TCTGACTCCCAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACTG
CTTTGGTAAATGTGGCACTAAATCTTAGCATTAATATGGATAACACACAAAGACAGTATGAGGC
AGAACGGAATAAAATGATTGGAAAACGAGCCAATGAAAGGCTAGAACTCCTGTTACAAAAGCGT
AAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGT
TTGTACATAGATACAGGGATGCAATAGCTGAAATCAGAGCTATATGCATTGAAGAGATTGGCAT
TTGGATGAAGATGTATAGTGATGCCTTCCTTAATGACAGCTATTTAAAATATGTTGGTTGGACT
ATGCATGATAAGCAAGGTGAGGTAAGACTCAAGTGTCTTACTGCTTTACAAGGGCTTTACTATA
ACAAAGAGCTTAACTCCAAACTGGAACTGTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTAT
GACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAGTTACTCACTCTTGTTTTACAG
AGTAGTGAAGAAGTTCTAACTGCAGAAGACTGTGAAAATGTCTATCATCTGGTTTATTCAGCTC
ACCGGCCAGTAGCAGTTGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGCCGTAGAGATCC
AGAAGAGGATGGAATAATGAAAAGAAGGGGAAGACAAGGTCCAAATGCCAATCTTGTCAAGACT
TTGGTGTTTTTCTTCTTGGAAAGTGAGTTACATGAACATGCAGCATACCTTGTGGATAGCATGT
GGGATTGTGCTACTGAGCTACTGAAAGACTGGGAATGTATGAATAGCTTGTTATTAGAGGAGCC
TCTCAGTGGAGAGGAAGCTCTAACAGACAGACAAGAGAGTGCTTTGATTGAAATAATGCTTTGT
ACTATTAGACAAGCAGCTGAATGTCATCCGCCTGTGGGAAGAGGGACAGGAAAAAGGGTGCTAA
CAGCAAAGGAGAAGAAGACACAGTTGGATGACAGAACAAGAATCACTGAGCTGTTTGCTGTGGC
CCTTCCACAATTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACCAATTTGTTGCAGTTA
CCTCAATACTTTGACTTGGAGATCTACACCACTGGACGATTGGAAAAGCACTTGGATGCCTTAT
TGCGTCAGATCCGAAATATTGTAGAGAAGCACACAGACACAGATGTTTTGGAAGCATGTTCTAA
AACTTACCATGCATTATGTAATGAAGAGTTCACGATCTTCAACAGAGTAGATATTTCAAGAAGT
CAGCTGATAGATGAACTGGCAGATAAATTTAACCGGCTTCTGGAAGATTTTCTGCAAGAGGGAG
AAGAACCTGACGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCA
TAATGCCCATGATCTTTCAAAGTGGGATTTGTTTGCTTGTAATTACAAACTCTTGAAAACCGGA
ATTGAAAATGGAGATATGCCTGAGCAGATCGTTATTCACGCACTGCAGTGTGCTCACTATGTAA
TCCTTTGGCAGCTTGCTAAGATCACTGAAAGCACTTCTACAAAGGAGGACTTGCTGCGTTTAAA
GAAACAGATGAGGGTATTTTGCCAGATATGTCAACATTACTTAACCAACGTGAATACTACTGTT
AAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGTCACCAGATTATGTCTG
GAGGGCGTGACATGTTAGAGCCATTAGTTTATACTCCTGATTCTTCATTGCAGTCTGAGTTGCT
CAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAGTAATAGTGCAGATGGTCAG
CAGGAGGATGAAGCCAGTAAAATTGAAGCTTTGCATAAGAGGAGAAATTTACTTGCAGCATTTT
GTAAGCTAATTGTATATACAGTGGTGGAGATGAACACAGCTGCGGATATCTTCAAGCAGTATAT
GAAGTATTATAACGATTATGGCGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATTGAC
AAAATTCAGTGTGCCAAGACTCTTATTCTCAGTTTGCAGCAGCTTTTTAATGAGATGATACAAG
AAAATGGCTATAACTTTGATAGATCATCCTCAACATTTAGCGGCATAAAAGAACTTGCTCGACG
TTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACCAGAGAAGCCATTGCCATGCTGCACAAA
GATGGCATAGAATTTGCTTTTAAGGAGCCTAATCCACAAGGGGAGAGCCATCCACCTTTAAATT
TGGCATTTCTTGATATTCTCAGTGAATTTTCTTCTAAACTGCTCCGACAAGATAAAAGAACAGT
GTATGTTTATTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAAGATGTATGGCTT
CCTCTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTA
GTGGAATGAGCAGTCGGGGATCAACTGTACGGAGTAAAAAATCAAAACCATCTACAGGGAAACG
GAAAGTGCTTGAAGGCATGCAACTAGCACTCCCTGAAGAAAGCAGTAGCAGTGACAGTATGTGG
TTGAGCAGAGAGCAGACACTGCACACCCCTGTTATGATGCAGACACCGCAGCTCACCTCCACTA
TTATGAGAGAACCGAAAAGGTTACGGCCTGAAGATAGCTTCATGAGTGTCTATCCGATGCAGAC
AGAACACCATCAAACTCCTCTGGATTACAACACGCAGGTAACATGGATGTTAGCTCAAAGACAA
CAAGAGGAAGCAAGGCAACAGCAGGAGAGAGCAGCAATGAGCTATGTTAAACTGCGAACTAATC
TTCAGCATGCCATTCAGCGTGGTACAAGCATAATGGAGGATGACGAAGAGCCGATTGTTGAAGA
TGTTATGATGTCCTCAGAAGGAAGGATTGAGGATCTTAATGAGGGAATGGACTTTGACACCATG
GATATAGACCTGCCACCATCAAAGAATAGAAGAGAGAGAACAGAACTGAAGCCTGATTTCTTTG
ATCCTGCTTCAATTATGGATGAATCAGTTCTTGGCGTGTCAATGTTTTAATACCAGTACACATT
AAATCTGTGATGAAGTCATTTTCTAAGTGGAAGAGGAAATTTTAAAATAAAGTGTGGTAGATAC
AGTGAAATTCTGTACAGATTTTTCTCTAAGGAGAATATAACATGCTTATGCTTACCAAGATGAA
GTGCATTGAGGGGCAGTTTTGTTTGCCTGAAAAAATAAAGGACAAGTAA

hide sequence

RefSeq Acc Id:

XM_017602032 ⟹ XP_017457521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,841,114 - 125,971,129 (+)	NCBI
mRatBN7.2	X	120,975,305 - 121,103,898 (+)	NCBI
Rnor_6.0	X	128,494,956 - 128,622,639 (+)	NCBI

Sequence:

show sequence

AGAGGGAACAACATTCATGTGACGGGCCCCTCGGCTTCTCTCCCCCGCCCCATCATCTCCAGCG
CGTGGTGGGGGAACTGCTTGGGCAAAGCGGTTGGCATCGATCTCTCCATCCTTCCCGAGGCCCC
GACTTCGGAACTGTCTTTCTTAGAGGAAGCACACTGTCTTTTATTCACATAAATATATGAATAT
ATTTCTGACATTGGGGTGATCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAAC
TGATTTTAATCTACTGCAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGACATT
GAAGGAAAAAATCAGAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAGAAGGGTCCAGCAG
AGAAGGGTAAAAGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCA
TCATCAGCAGAATGGAGTTGAAAACATGATGTTGTTTGAAGTTGTAAAAATGGGCAAGAGTGCT
ATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTG
ACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGCAAAGGAGTCGTCACAGCAGAGATGTTTAG
ACATATGCAGAACTCTGAGATAATTCGAAAAATGACAGAAGAATTCGACGAGGATAGTGGGGAT
TACCCACTAACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAGTCCAGCTTCTGTGAGTTCATTG
GTGTATTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTACATGATGGACACTGTCAT
TTCACTTCTTACTGGATTGTCTGACTCCCAAGTCAGAGCATTTCGACATACAAGCACCCTGGCA
GCTATGAAGTTGATGACTGCTTTGGTAAATGTGGCACTAAATCTTAGCATTAATATGGATAACA
CACAAAGACAGTATGAGGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAAAGGCTAGA
ACTCCTGTTACAAAAGCGTAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAAT
GCAATATTTAAAGGAGTGTTTGTACATAGATACAGGGATGCAATAGCTGAAATCAGAGCTATAT
GCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTCCTTAATGACAGCTATTT
AAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAGGTAAGACTCAAGTGTCTTACTGCT
TTACAAGGGCTTTACTATAACAAAGAGCTTAACTCCAAACTGGAACTGTTTACCAGTCGGTTCA
AGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAGTT
ACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTAACTGCAGAAGACTGTGAAAATGTCTAT
CATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTTGCAGCTGGAGAATTTCTCTACAAAAAGC
TCTTCAGCCGTAGAGATCCAGAAGAGGATGGAATAATGAAAAGAAGGGGAAGACAAGGTCCAAA
TGCCAATCTTGTCAAGACTTTGGTGTTTTTCTTCTTGGAAAGTGAGTTACATGAACATGCAGCA
TACCTTGTGGATAGCATGTGGGATTGTGCTACTGAGCTACTGAAAGACTGGGAATGTATGAATA
GCTTGTTATTAGAGGAGCCTCTCAGTGGAGAGGAAGCTCTAACAGACAGACAAGAGAGTGCTTT
GATTGAAATAATGCTTTGTACTATTAGACAAGCAGCTGAATGTCATCCGCCTGTGGGAAGAGGG
ACAGGAAAAAGGGTGCTAACAGCAAAGGAGAAGAAGACACAGTTGGATGACAGAACAAGAATCA
CTGAGCTGTTTGCTGTGGCCCTTCCACAATTATTAGCAAAATACTCTGTAGATGCAGAAAAGGT
GACCAATTTGTTGCAGTTACCTCAATACTTTGACTTGGAGATCTACACCACTGGACGATTGGAA
AAGCACTTGGATGCCTTATTGCGTCAGATCCGAAATATTGTAGAGAAGCACACAGACACAGATG
TTTTGGAAGCATGTTCTAAAACTTACCATGCATTATGTAATGAAGAGTTCACGATCTTCAACAG
AGTAGATATTTCAAGAAGTCAGCTGATAGATGAACTGGCAGATAAATTTAACCGGCTTCTGGAA
GATTTTCTGCAAGAGGGAGAAGAACCTGACGAAGATGATGCATATCAGGTATTGTCAACATTGA
AGAGGATCACTGCTTTTCATAATGCCCATGATCTTTCAAAGTGGGATTTGTTTGCTTGTAATTA
CAAACTCTTGAAAACCGGAATTGAAAATGGAGATATGCCTGAGCAGATCGTTATTCACGCACTG
CAGTGTGCTCACTATGTAATCCTTTGGCAGCTTGCTAAGATCACTGAAAGCACTTCTACAAAGG
AGGACTTGCTGCGTTTAAAGAAACAGATGAGGGTATTTTGCCAGATATGTCAACATTACTTAAC
CAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTC
AGTCACCAGATTATGTCTGGAGGGCGTGACATGTTAGAGCCATTAGTTTATACTCCTGATTCTT
CATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAG
TAATAGTGCAGATGGTCAGCAGGAGGATGAAGCCAGTAAAATTGAAGCTTTGCATAAGAGGAGA
AATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACAGTGGTGGAGATGAACACAGCTGCGG
ATATCTTCAAGCAGTATATGAAGTATTATAACGATTATGGCGATATCATCAAAGAAACAATGAG
TAAAACAAGGCAGATTGACAAAATTCAGTGTGCCAAGACTCTTATTCTCAGTTTGCAGCAGCTT
TTTAATGAGATGATACAAGAAAATGGCTATAACTTTGATAGATCATCCTCAACATTTAGCGGCA
TAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACCAGAGAAGC
CATTGCCATGCTGCACAAAGATGGCATAGAATTTGCTTTTAAGGAGCCTAATCCACAAGGGGAG
AGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTCAGTGAATTTTCTTCTAAACTGCTCC
GACAAGATAAAAGAACAGTGTATGTTTATTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCG
AAGAGAAGATGTATGGCTTCCTCTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGAT
GACACCATGTCAGTCATTAGTGGAATGAGCAGTCGGGGATCAACTGTACGGAGTAAAAAATCAA
AACCATCTACAGGGAAACGGAAAGTGCTTGAAGGCATGCAACTAGCACTCCCTGAAGAAAGCAG
TAGCAGTGACAGTATGTGGTTGAGCAGAGAGCAGACACTGCACACCCCTGTTATGATGCAGACA
CCGCAGCTCACCTCCACTATTATGAGAGAACCGAAAAGGTTACGGCCTGAAGATAGCTTCATGA
GTGTCTATCCGATGCAGACAGAACACCATCAAACTCCTCTGGATTACAACACGCAGGTAACATG
GATGTTAGCTCAAAGACAACAAGAGGAAGCAAGGCAACAGCAGGAGAGAGCAGCAATGAGCTAT
GTTAAACTGCGAACTAATCTTCAGCATGCCATTCAGCGTGGTACAAGCATAATGGAGGATGACG
AAGAGCCGATTGTTGAAGATGTTATGATGTCCTCAGAAGGAAGGATTGAGGATCTTAATGAGGG
AATGGACTTTGACACCATGGATATAGACCTGCCACCATCAAAGAATAGAAGAGAGAGAACAGAA
CTGAAGCCTGATTTCTTTGATCCTGCTTCAATTATGGATGAATCAGTTCTTGGCGTGTCAATGT
TTTAATACCAGTACACATTAAATCTGTGATGAAGTCATTTTCTAAGTGGAAGAGGAAATTTTAA
AATAAAGTGTGGTAGATACAGTGAAATTCTGTACAGATTTTTCTCTAAGGAGAATATAACATGC
TTATGCTTACCAAGATGAAGTGCATTGAGGGGCAGTTTTGTTTGCCTGAAAAAATAAAGGACAA
GTAA

hide sequence

RefSeq Acc Id:

XM_039099693 ⟹ XP_038955621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,841,124 - 125,971,129 (+)	NCBI
mRatBN7.2	X	120,975,305 - 121,103,898 (+)	NCBI

RefSeq Acc Id:

XM_039099694 ⟹ XP_038955622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,840,749 - 125,971,129 (+)	NCBI
mRatBN7.2	X	120,975,272 - 121,103,898 (+)	NCBI

RefSeq Acc Id:

XM_063279975 ⟹ XP_063136045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,841,226 - 125,971,129 (+)	NCBI

RefSeq Acc Id:

XM_063279976 ⟹ XP_063136046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,841,114 - 125,971,129 (+)	NCBI

RefSeq Acc Id:

XM_063279977 ⟹ XP_063136047

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,841,124 - 125,971,129 (+)	NCBI

RefSeq Acc Id:

XM_063279978 ⟹ XP_063136048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,841,226 - 125,971,129 (+)	NCBI

RefSeq Acc Id:

XM_063279979 ⟹ XP_063136049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,843,203 - 125,971,129 (+)	NCBI

RefSeq Acc Id:

XM_063279980 ⟹ XP_063136050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	125,840,749 - 125,971,129 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001166978	(Get FASTA)	NCBI Sequence Viewer
	NP_001420969	(Get FASTA)	NCBI Sequence Viewer
	NP_001420970	(Get FASTA)	NCBI Sequence Viewer
	NP_001420971	(Get FASTA)	NCBI Sequence Viewer
	NP_001420972	(Get FASTA)	NCBI Sequence Viewer
	NP_001420973	(Get FASTA)	NCBI Sequence Viewer
	NP_001420974	(Get FASTA)	NCBI Sequence Viewer
	XP_006257565	(Get FASTA)	NCBI Sequence Viewer
	XP_008771743	(Get FASTA)	NCBI Sequence Viewer
	XP_017457521	(Get FASTA)	NCBI Sequence Viewer
	XP_038955621	(Get FASTA)	NCBI Sequence Viewer
	XP_038955622	(Get FASTA)	NCBI Sequence Viewer
	XP_063136045	(Get FASTA)	NCBI Sequence Viewer
	XP_063136046	(Get FASTA)	NCBI Sequence Viewer
	XP_063136047	(Get FASTA)	NCBI Sequence Viewer
	XP_063136048	(Get FASTA)	NCBI Sequence Viewer
	XP_063136049	(Get FASTA)	NCBI Sequence Viewer
	XP_063136050	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10888	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000044231
	ENSRNOP00000044231.3
	ENSRNOP00000073004
	ENSRNOP00000073004.1

RefSeq Acc Id:

NP_001166978 ⟸ NM_001173507

- UniProtKB:

D3ZXT2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKSGNGGGKPP
SGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK
GVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIY
DEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMI
GKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYS
DAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEY
DVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIM
KRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEA
LTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTRITELFAVALPQLLA
KYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALC
NEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLS
KWDLFACNYKLLKTGIENGDMPEQIVIHALQCAHYVILWQLAKITESTSTKEDLLRLKKQMRVF
CQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDH
VFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDY
GDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFG
LDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEK
FMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVLEGM
QLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTP
LDYNQRGTSIMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFD
PASIMDESVLGVSMF

hide sequence

RefSeq Acc Id:	XP_006257565 ⟸ XM_006257503
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4D9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKSGNGGGKPP SGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK GVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIY DEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMI GKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYS DAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEY DVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIM KRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEA LTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTRITELFAVALPQLLA KYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALC NEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLS KWDLFACNYKLLKTGIENGDMPEQIVIHALQCAHYVILWQLAKITESTSTKEDLLRLKKQMRVF CQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDH VFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDY GDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFG LDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEK FMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVLEGM QLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTP LDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIQRGTSIMEDDEEPIVEDVMMSSE GRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF hide sequence

RefSeq Acc Id:

XP_008771743 ⟸ XM_008773521

- Peptide Label:

isoform X1

- Sequence:

show sequence

MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKSGNGGGKPP
SGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK
GVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIY
DEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMI
GKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYS
DAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEY
DVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIM
KRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEA
LTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTRITELFAVALPQLLA
KYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALC
NEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLS
KWDLFACNYKLLKTGIENGDMPEQIVIHALQCAHYVILWQLAKITESTSTKEDLLRLKKQMRVF
CQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDH
VFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDY
GDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFG
LDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEK
FMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVLEGM
QLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTP
LDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIQRGTSIMEDDEEPIVEDVMMSSE
GRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF

hide sequence

RefSeq Acc Id:	XP_017457521 ⟸ XM_017602032
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4D9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKSGNGGGKPP SGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK GVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIY DEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMI GKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYS DAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEY DVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIM KRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEA LTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTRITELFAVALPQLLA KYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALC NEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLS KWDLFACNYKLLKTGIENGDMPEQIVIHALQCAHYVILWQLAKITESTSTKEDLLRLKKQMRVF CQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDH VFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDY GDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFG LDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEK FMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVLEGM QLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTP LDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIQRGTSIMEDDEEPIVEDVMMSSE GRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF hide sequence

Ensembl Acc Id:

ENSRNOP00000073004 ⟸ ENSRNOT00000082970

Ensembl Acc Id:

ENSRNOP00000044231 ⟸ ENSRNOT00000044240

RefSeq Acc Id:	XP_038955622 ⟸ XM_039099694
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4D9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955621 ⟸ XM_039099693
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063136050 ⟸ XM_063279980
- Peptide Label:	isoform X2
- UniProtKB:	D3ZXT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136046 ⟸ XM_063279976
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063136047 ⟸ XM_063279977
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063136045 ⟸ XM_063279975
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4D9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136048 ⟸ XM_063279978
- Peptide Label:	isoform X2
- UniProtKB:	D3ZXT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136049 ⟸ XM_063279979
- Peptide Label:	isoform X2

Protein Domains

SCD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K4D9-F1-model_v2	AlphaFold	A0A0G2K4D9	1-1268	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13702003

Promoter ID:

EPDNEW_R12527

Type:

multiple initiation site

Name:

Stag2_1

Description:

stromal antigen 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	128,493,594 - 128,493,654	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562042	AgrOrtholog
BioCyc Gene	G2FUF-1231	BioCyc
Ensembl Genes	ENSRNOG00000029885	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044240	ENTREZGENE
	ENSRNOT00000044240.7	UniProtKB/TrEMBL
	ENSRNOT00000082970	ENTREZGENE
	ENSRNOT00000082970.3	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	Cohesin_Scc3/SA	UniProtKB/TrEMBL
	HEAT_SCC3-SA	UniProtKB/TrEMBL
	SCD	UniProtKB/TrEMBL
	STAG	UniProtKB/TrEMBL
KEGG Report	rno:313304	UniProtKB/TrEMBL
NCBI Gene	313304	ENTREZGENE
PANTHER	COHESIN SUBUNIT SA-2	UniProtKB/TrEMBL
	PTHR11199	UniProtKB/TrEMBL
Pfam	HEAT_SCC3-SA	UniProtKB/TrEMBL
	SCD	UniProtKB/TrEMBL
	STAG	UniProtKB/TrEMBL
PhenoGen	Stag2	PhenoGen
PROSITE	SCD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029885	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A0A0G2K4D9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZXT2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-05	Stag2	STAG2 cohesin complex component	Stag2	stromal antigen 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Stag2	stromal antigen 2	Stag2_predicted	stromal antigen 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Stag2_predicted	stromal antigen 2 (predicted)	RGD1562042_predicted	similar to stromal antigen 2 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1562042_predicted	similar to stromal antigen 2 (predicted)	LOC313304	similar to stromal antigen 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC313304	similar to stromal antigen 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

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Imported Annotations - KEGG (archival)