Cep41 (centrosomal protein 41) - Rat Genome Database

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Gene: Cep41 (centrosomal protein 41) Rattus norvegicus
Analyze
Symbol: Cep41
Name: centrosomal protein 41
RGD ID: 1562034
Description: Predicted to be involved in cilium assembly and protein polyglutamylation. Predicted to be located in centriole; centrosome; and cilium. Predicted to be active in ciliary basal body. Human ortholog(s) of this gene implicated in Joubert syndrome 15. Orthologous to human CEP41 (centrosomal protein 41); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 41kDa; centrosomal protein of 41 kDa; MGC112886; testis specific gene A14; testis specific, 14; testis-specific gene A14 protein; Tsga14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8460,238,602 - 60,279,670 (-)NCBIGRCr8
mRatBN7.2459,271,218 - 59,312,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl459,271,218 - 59,310,668 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx464,250,110 - 64,264,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0460,166,298 - 60,181,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,568,224 - 58,583,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0457,966,783 - 58,006,931 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl457,966,783 - 58,006,839 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,727,700 - 57,767,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4457,564,301 - 57,579,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera454,370,995 - 54,385,904 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IEA,ISO,ISS)
centrosome  (IEA,ISO)
ciliary basal body  (IBA,IEA,ISO,ISS)
cilium  (IEA,ISO,ISS)
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14654843   PMID:19946888   PMID:21399614   PMID:22246503   PMID:22326026  


Genomics

Comparative Map Data
Cep41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8460,238,602 - 60,279,670 (-)NCBIGRCr8
mRatBN7.2459,271,218 - 59,312,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl459,271,218 - 59,310,668 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx464,250,110 - 64,264,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0460,166,298 - 60,181,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,568,224 - 58,583,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0457,966,783 - 58,006,931 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl457,966,783 - 58,006,839 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,727,700 - 57,767,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4457,564,301 - 57,579,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera454,370,995 - 54,385,904 (-)NCBICelera
Cytogenetic Map4q22NCBI
CEP41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387130,393,771 - 130,441,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7130,393,771 - 130,442,433 (-)EnsemblGRCh38hg38GRCh38
GRCh377130,033,612 - 130,080,857 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367129,823,611 - 129,868,090 (-)NCBINCBI36Build 36hg18NCBI36
Build 347129,630,325 - 129,674,805NCBI
Celera7124,832,140 - 124,876,628 (-)NCBICelera
Cytogenetic Map7q32.2NCBI
HuRef7124,395,665 - 124,443,117 (-)NCBIHuRef
CHM1_17129,967,019 - 130,014,473 (-)NCBICHM1_1
T2T-CHM13v2.07131,707,487 - 131,755,472 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27129,418,996 - 129,466,457 (-)NCBI
Cep41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,653,456 - 30,710,511 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl630,653,456 - 30,693,748 (-)EnsemblGRCm39 Ensembl
GRCm38630,653,457 - 30,710,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,653,457 - 30,693,749 (-)EnsemblGRCm38mm10GRCm38
MGSCv37630,603,457 - 30,643,682 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36630,603,467 - 30,643,692 (-)NCBIMGSCv36mm8
Celera630,663,302 - 30,703,608 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.52NCBI
Cep41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547911,025,320 - 11,070,964 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547911,025,320 - 11,071,256 (-)NCBIChiLan1.0ChiLan1.0
CEP41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26167,216,392 - 167,261,023 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1719,228,926 - 19,271,267 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07122,360,248 - 122,406,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17134,880,086 - 134,924,657 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7134,880,086 - 134,924,657 (-)Ensemblpanpan1.1panPan2
CEP41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1146,502,713 - 6,554,973 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl146,502,926 - 6,552,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha146,192,664 - 6,247,954 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0146,266,929 - 6,322,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl146,266,355 - 6,319,183 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1146,471,962 - 6,527,257 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0146,217,185 - 6,272,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0146,360,779 - 6,416,088 (+)NCBIUU_Cfam_GSD_1.0
Cep41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511824,713,251 - 24,757,455 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365794,846,966 - 4,887,768 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365794,847,137 - 4,890,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,415,562 - 18,462,575 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11818,416,170 - 18,462,579 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21819,421,466 - 19,466,654 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12199,027,826 - 99,078,666 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2199,031,953 - 99,078,641 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660424,322,429 - 4,374,569 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247835,859,739 - 5,905,196 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247835,859,800 - 5,906,496 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:146
Interacting mature miRNAs:176
Transcripts:ENSRNOT00000014621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat

Markers in Region
BE111164  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8460,240,949 - 60,241,735 (+)Marker Load Pipeline
mRatBN7.2459,273,565 - 59,274,351 (+)MAPPERmRatBN7.2
Rnor_6.0457,969,131 - 57,969,916NCBIRnor6.0
Rnor_5.0457,730,048 - 57,730,833UniSTSRnor5.0
RGSC_v3.4457,565,727 - 57,566,512UniSTSRGSC3.4
Celera454,372,421 - 54,373,206UniSTS
RH 3.4 Map4348.7UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000014621   ⟹   ENSRNOP00000014621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl459,272,155 - 59,287,037 (-)Ensembl
Rnor_6.0 Ensembl457,967,705 - 57,983,236 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076645   ⟹   ENSRNOP00000068210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl459,271,218 - 59,310,639 (-)Ensembl
Rnor_6.0 Ensembl457,966,783 - 58,006,839 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098216   ⟹   ENSRNOP00000084486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl459,296,885 - 59,310,668 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098419   ⟹   ENSRNOP00000094881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl459,283,696 - 59,310,639 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104993   ⟹   ENSRNOP00000081964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl459,273,537 - 59,310,639 (-)Ensembl
RefSeq Acc Id: NM_001025770   ⟹   NP_001020941
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8460,239,524 - 60,254,419 (-)NCBI
mRatBN7.2459,272,140 - 59,287,037 (-)NCBI
Rnor_6.0457,967,705 - 57,983,236 (-)NCBI
Rnor_5.0457,727,700 - 57,767,027 (-)NCBI
RGSC_v3.4457,564,301 - 57,579,461 (-)RGD
Celera454,370,995 - 54,385,904 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415927   ⟹   NP_001402856
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8460,238,602 - 60,278,022 (-)NCBI
mRatBN7.2459,271,218 - 59,310,644 (-)NCBI
RefSeq Acc Id: XM_039108120   ⟹   XP_038964048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8460,238,602 - 60,279,670 (-)NCBI
mRatBN7.2459,271,218 - 59,312,343 (-)NCBI
RefSeq Acc Id: NP_001020941   ⟸   NM_001025770
- Peptide Label: isoform 1
- UniProtKB: F1LXL2 (UniProtKB/Swiss-Prot),   Q4KM37 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014621   ⟸   ENSRNOT00000014621
Ensembl Acc Id: ENSRNOP00000068210   ⟸   ENSRNOT00000076645
RefSeq Acc Id: XP_038964048   ⟸   XM_039108120
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000094881   ⟸   ENSRNOT00000098419
Ensembl Acc Id: ENSRNOP00000084486   ⟸   ENSRNOT00000098216
Ensembl Acc Id: ENSRNOP00000081964   ⟸   ENSRNOT00000104993
RefSeq Acc Id: NP_001402856   ⟸   NM_001415927
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZWA8 (UniProtKB/TrEMBL),   A0A096MJP4 (UniProtKB/TrEMBL),   A6IEH4 (UniProtKB/TrEMBL)
Protein Domains
Rhodanese

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KM37-F1-model_v2 AlphaFold Q4KM37 1-339 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692945
Promoter ID:EPDNEW_R3465
Type:initiation region
Name:Cep41_1
Description:centrosomal protein 41
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0458,006,881 - 58,006,941EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562034 AgrOrtholog
BioCyc Gene G2FUF-45340 BioCyc
Ensembl Genes ENSRNOG00000010950 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014621.7 UniProtKB/Swiss-Prot
  ENSRNOT00000076645.3 UniProtKB/TrEMBL
  ENSRNOT00000098216.1 UniProtKB/TrEMBL
  ENSRNOT00000098419.1 UniProtKB/TrEMBL
  ENSRNOT00000104993.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7378587 IMAGE-MGC_LOAD
InterPro CEP41 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodanese-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodanese-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:500069 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112886 IMAGE-MGC_LOAD
NCBI Gene 500069 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 41 KDA UniProtKB/Swiss-Prot
  CENTROSOMAL PROTEIN OF 41 KDA UniProtKB/Swiss-Prot
  CENTROSOMAL PROTEIN OF 41 KDA UniProtKB/TrEMBL
  CENTROSOMAL PROTEIN OF 41 KDA UniProtKB/TrEMBL
Pfam Rhodanese UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cep41 PhenoGen
PROSITE RHODANESE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010950 RatGTEx
SMART RHOD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52821 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MJP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1F4_RAT UniProtKB/TrEMBL
  A0A8I6AN01_RAT UniProtKB/TrEMBL
  A6IEH4 ENTREZGENE, UniProtKB/TrEMBL
  CEP41_RAT UniProtKB/Swiss-Prot
  F1LXL2 ENTREZGENE
  Q4KM37 ENTREZGENE
UniProt Secondary F1LXL2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Cep41  centrosomal protein 41  Cep41  centrosomal protein 41kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-13 Cep41  centrosomal protein 41kDa  Cep41  centrosomal protein 41  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-10-18 Cep41  centrosomal protein 41  Tsga14  testis specific, 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Tsga14  testis specific, 14  Tsga14  testis specific gene A14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Tsga14  testis specific gene A14  Tsga14  testis specific, 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Tsga14  testis specific, 14      Symbol and Name status set to provisional 70820 PROVISIONAL