Tmem260 (transmembrane protein 260) - Rat Genome Database

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Gene: Tmem260 (transmembrane protein 260) Rattus norvegicus
Analyze
Symbol: Tmem260
Name: transmembrane protein 260
RGD ID: 1562018
Description: Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein maturation. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in T-cell non-Hodgkin lymphoma; non-Hodgkin lymphoma; and stomach cancer. Orthologous to human TMEM260 (transmembrane protein 260); INTERACTS WITH 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC361030; LOC361030; MGC188600; RGD1562018; similar to Protein C14orf101 homolog; uncharacterized protein LOC361030
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,213,658 - 24,287,242 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1524,213,812 - 24,286,489 (+)EnsemblGRCr8
mRatBN7.21521,734,119 - 21,804,049 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1521,734,151 - 21,806,801 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1524,514,928 - 24,582,979 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01525,472,790 - 25,540,805 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01523,723,434 - 23,791,496 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01525,294,452 - 25,361,623 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1525,294,425 - 25,361,623 (+)Ensemblrn6Rnor6.0
Rnor_5.01529,220,354 - 29,287,363 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41524,438,683 - 24,480,735 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1522,113,385 - 22,180,692 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. A polymorphism at the microRNA binding site in the 3'-untranslated region of C14orf101 is associated with the risk of gastric cancer development. Wang C, etal., Exp Ther Med. 2016 Sep;12(3):1867-1872. doi: 10.3892/etm.2016.3521. Epub 2016 Jul 13.
4. A polymorphism at the microRNA binding site in the 3' untranslated region of C14orf101 is associated with non-Hodgkin lymphoma overall survival. Yang B, etal., Cancer Genet. 2014 Apr;207(4):141-6. doi: 10.1016/j.cancergen.2014.03.007. Epub 2014 Mar 22.
Additional References at PubMed
PMID:8889548   PMID:12477932  


Genomics

Comparative Map Data
Tmem260
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,213,658 - 24,287,242 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1524,213,812 - 24,286,489 (+)EnsemblGRCr8
mRatBN7.21521,734,119 - 21,804,049 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1521,734,151 - 21,806,801 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1524,514,928 - 24,582,979 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01525,472,790 - 25,540,805 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01523,723,434 - 23,791,496 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01525,294,452 - 25,361,623 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1525,294,425 - 25,361,623 (+)Ensemblrn6Rnor6.0
Rnor_5.01529,220,354 - 29,287,363 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41524,438,683 - 24,480,735 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1522,113,385 - 22,180,692 (+)NCBICelera
Cytogenetic Map15p14NCBI
TMEM260
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381456,579,525 - 56,663,165 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1456,488,354 - 56,650,606 (+)Ensemblhg38GRCh38
GRCh371457,046,516 - 57,116,233 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361456,116,264 - 56,185,986 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341456,116,295 - 56,184,755NCBI
Celera1437,095,848 - 37,165,589 (+)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1437,211,146 - 37,280,868 (+)NCBIHuRef
CHM1_11456,985,304 - 57,055,002 (+)NCBICHM1_1
T2T-CHM13v2.01450,785,268 - 50,870,723 (+)NCBIT2T-CHM13v2.0
Tmem260
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391448,683,580 - 48,797,640 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1448,683,581 - 48,761,703 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381448,446,123 - 48,560,183 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1448,446,124 - 48,524,246 (+)Ensemblmm10GRCm38
MGSCv371449,066,027 - 49,134,834 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361447,368,527 - 47,437,081 (+)NCBIMGSCv36mm8
Celera1444,643,806 - 44,712,183 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.06NCBI
Tmem260
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546610,543,331 - 10,600,990 (+)Ensembl
ChiLan1.0NW_00495546610,543,331 - 10,600,990 (+)NCBIChiLan1.0ChiLan1.0
TMEM260
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21557,690,850 - 57,785,292 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11456,907,539 - 56,979,313 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01437,156,362 - 37,236,844 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11455,426,297 - 55,497,940 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1455,426,403 - 55,494,535 (+)EnsemblpanPan2panpan1.1
TMEM260
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1832,238,992 - 32,309,320 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl832,238,988 - 32,306,317 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha832,007,531 - 32,077,627 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0832,489,874 - 32,560,013 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl832,489,869 - 32,557,018 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1832,093,498 - 32,163,480 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0832,168,974 - 32,239,019 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0832,544,526 - 32,614,860 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem260
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864072,889,386 - 72,962,037 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364951,229,418 - 1,294,269 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364951,229,644 - 1,298,689 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM260
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1185,821,518 - 185,884,921 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11185,821,497 - 185,886,579 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21206,440,589 - 206,502,497 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM260
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12433,760,666 - 33,828,881 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2433,760,727 - 33,824,485 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605321,977,749 - 22,041,497 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem260
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248841,606,199 - 1,663,749 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248841,606,197 - 1,663,752 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem260
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11274,526,682 - 74,591,085 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem260
496 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:923
Count of miRNA genes:320
Interacting mature miRNAs:430
Transcripts:ENSRNOT00000017871
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat

Markers in Region
RH131865  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21521,801,802 - 21,801,992 (+)MAPPERmRatBN7.2
Rnor_6.01525,361,254 - 25,361,443NCBIRnor6.0
Rnor_5.01529,286,994 - 29,287,183UniSTSRnor5.0
RGSC_v3.41524,480,366 - 24,480,555UniSTSRGSC3.4
Celera1522,180,323 - 22,180,512UniSTS
Cytogenetic Map15p14UniSTS
RH139979  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21521,735,602 - 21,735,788 (+)MAPPERmRatBN7.2
Rnor_6.01525,295,904 - 25,296,089NCBIRnor6.0
Rnor_5.01529,221,795 - 29,221,980UniSTSRnor5.0
Celera1522,114,837 - 22,115,022UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB778767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK842094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN948715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000017871   ⟹   ENSRNOP00000017871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,213,812 - 24,281,862 (+)Ensembl
mRatBN7.2 Ensembl1521,734,151 - 21,802,172 (+)Ensembl
Rnor_6.0 Ensembl1525,294,425 - 25,361,623 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096624   ⟹   ENSRNOP00000093081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,213,812 - 24,255,811 (+)Ensembl
mRatBN7.2 Ensembl1521,734,151 - 21,776,127 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099556   ⟹   ENSRNOP00000082632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,213,812 - 24,286,489 (+)Ensembl
mRatBN7.2 Ensembl1521,734,151 - 21,806,801 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100379   ⟹   ENSRNOP00000092810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,213,812 - 24,286,489 (+)Ensembl
mRatBN7.2 Ensembl1521,734,151 - 21,806,801 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117457   ⟹   ENSRNOP00000084142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,213,839 - 24,281,862 (+)Ensembl
mRatBN7.2 Ensembl1521,734,151 - 21,781,120 (+)Ensembl
RefSeq Acc Id: NM_001170475   ⟹   NP_001163946
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,846 - 24,281,864 (+)NCBI
mRatBN7.21521,734,151 - 21,802,172 (+)NCBI
Rnor_6.01525,294,452 - 25,361,623 (+)NCBI
Rnor_5.01529,220,354 - 29,287,363 (+)NCBI
RGSC_v3.41524,438,683 - 24,480,735 (+)RGD
Celera1522,113,385 - 22,180,692 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093467   ⟹   XP_038949395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,287,242 (+)NCBI
mRatBN7.21521,734,119 - 21,804,049 (+)NCBI
RefSeq Acc Id: XM_039093470   ⟹   XP_038949398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,810 - 24,255,819 (+)NCBI
mRatBN7.21521,734,120 - 21,776,127 (+)NCBI
RefSeq Acc Id: XM_039093471   ⟹   XP_038949399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,255,819 (+)NCBI
mRatBN7.21521,734,119 - 21,776,127 (+)NCBI
RefSeq Acc Id: XM_039093472   ⟹   XP_038949400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,263,966 (+)NCBI
mRatBN7.21521,734,119 - 21,784,274 (+)NCBI
RefSeq Acc Id: XM_039093474   ⟹   XP_038949402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,255,819 (+)NCBI
mRatBN7.21521,734,119 - 21,776,127 (+)NCBI
RefSeq Acc Id: XM_063274395   ⟹   XP_063130465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,658 - 24,281,864 (+)NCBI
RefSeq Acc Id: XM_063274396   ⟹   XP_063130466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,270,645 (+)NCBI
RefSeq Acc Id: XM_063274397   ⟹   XP_063130467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,263,944 (+)NCBI
RefSeq Acc Id: XM_063274398   ⟹   XP_063130468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,263,944 (+)NCBI
RefSeq Acc Id: XR_005493750
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,213,814 - 24,273,008 (+)NCBI
mRatBN7.21521,734,119 - 21,793,316 (+)NCBI
RefSeq Acc Id: NP_001163946   ⟸   NM_001170475
- UniProtKB: F1M7C0 (UniProtKB/TrEMBL),   A0A8I6AHR0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017871   ⟸   ENSRNOT00000017871
RefSeq Acc Id: XP_038949395   ⟸   XM_039093467
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949400   ⟸   XM_039093472
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038949399   ⟸   XM_039093471
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZWL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949402   ⟸   XM_039093474
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038949398   ⟸   XM_039093470
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AJK8 (UniProtKB/TrEMBL),   B5DEJ7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093081   ⟸   ENSRNOT00000096624
Ensembl Acc Id: ENSRNOP00000084142   ⟸   ENSRNOT00000117457
Ensembl Acc Id: ENSRNOP00000092810   ⟸   ENSRNOT00000100379
Ensembl Acc Id: ENSRNOP00000082632   ⟸   ENSRNOT00000099556
RefSeq Acc Id: XP_063130465   ⟸   XM_063274395
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063130466   ⟸   XM_063274396
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZTW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130467   ⟸   XM_063274397
- Peptide Label: isoform X5
- UniProtKB: B5DEJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130468   ⟸   XM_063274398
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M7C0-F1-model_v2 AlphaFold F1M7C0 1-703 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699616
Promoter ID:EPDNEW_R10140
Type:initiation region
Name:Tmem260_1
Description:transmembrane protein 260
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01525,294,441 - 25,294,501EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562018 AgrOrtholog
BioCyc Gene G2FUF-14123 BioCyc
Ensembl Genes ENSRNOG00000013353 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017871 ENTREZGENE
  ENSRNOT00000017871.9 UniProtKB/TrEMBL
  ENSRNOT00000096624 ENTREZGENE
  ENSRNOT00000096624.2 UniProtKB/TrEMBL
  ENSRNOT00000099556 ENTREZGENE
  ENSRNOT00000099556.2 UniProtKB/TrEMBL
  ENSRNOT00000100379.2 UniProtKB/TrEMBL
  ENSRNOT00000117457.2 UniProtKB/TrEMBL
InterPro DUF2723 UniProtKB/TrEMBL
  GT117_domain-containing UniProtKB/TrEMBL
NCBI Gene 361030 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 260 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 260 UniProtKB/TrEMBL
Pfam DUF2723 UniProtKB/TrEMBL
PhenoGen Tmem260 PhenoGen
RatGTEx ENSRNOG00000013353 RatGTEx
UniProt A0A8I5ZTW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWL8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJK8 ENTREZGENE, UniProtKB/TrEMBL
  B5DEJ7 ENTREZGENE, UniProtKB/TrEMBL
  F1M7C0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-20 Tmem260  transmembrane protein 260  RGD1562018  similar to Protein C14orf101 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562018  similar to Protein C14orf101 homolog   RGD1562018_predicted  similar to Protein C14orf101 homolog (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562018_predicted  similar to Protein C14orf101 homolog (predicted)  LOC361030  similar to Protein C14orf101 homolog  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361030  similar to Protein C14orf101 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL