Cul9 (cullin 9) - Rat Genome Database

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Gene: Cul9 (cullin 9) Rattus norvegicus
Analyze
Symbol: Cul9
Name: cullin 9
RGD ID: 1562008
Description: Predicted to enable several functions, including ATP binding activity; ubiquitin protein ligase binding activity; and zinc ion binding activity. Predicted to be involved in microtubule cytoskeleton organization; protein ubiquitination; and regulation of mitotic nuclear division. Predicted to be located in cytosol. Predicted to be part of cullin-RING ubiquitin ligase complex. Orthologous to human CUL9 (cullin 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cullin-9; LOC316228; p53-associated parkin-like cytoplasmic protein; Parc; RGD1562008; similar to p53-associated parkin-like cytoplasmic protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,933,699 - 21,977,145 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl921,933,803 - 21,977,145 (+)EnsemblGRCr8
mRatBN7.2914,435,948 - 14,479,552 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,436,111 - 14,479,548 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx923,019,900 - 23,063,207 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,082,972 - 28,126,214 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,383,281 - 26,426,587 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,747,449 - 16,844,033 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,747,662 - 16,844,057 (+)Ensemblrn6Rnor6.0
Rnor_5.0915,652,541 - 15,745,381 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.499,800,224 - 9,863,348 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera912,185,789 - 12,227,563 (+)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24793696  


Genomics

Comparative Map Data
Cul9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,933,699 - 21,977,145 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl921,933,803 - 21,977,145 (+)EnsemblGRCr8
mRatBN7.2914,435,948 - 14,479,552 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,436,111 - 14,479,548 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx923,019,900 - 23,063,207 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,082,972 - 28,126,214 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,383,281 - 26,426,587 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,747,449 - 16,844,033 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,747,662 - 16,844,057 (+)Ensemblrn6Rnor6.0
Rnor_5.0915,652,541 - 15,745,381 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.499,800,224 - 9,863,348 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera912,185,789 - 12,227,563 (+)NCBICelera
Cytogenetic Map9q12NCBI
CUL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,182,196 - 43,224,587 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,182,181 - 43,224,587 (+)Ensemblhg38GRCh38
GRCh37643,149,934 - 43,192,325 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,257,900 - 43,300,303 (+)NCBIBuild 36Build 36hg18NCBI36
Celera644,702,143 - 44,744,534 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef642,866,612 - 42,909,021 (+)NCBIHuRef
CHM1_1643,152,810 - 43,195,260 (+)NCBICHM1_1
T2T-CHM13v2.0643,010,969 - 43,053,382 (+)NCBIT2T-CHM13v2.0
Cul9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,811,535 - 46,857,314 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,811,498 - 46,857,314 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381746,500,609 - 46,546,388 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,500,572 - 46,546,388 (-)Ensemblmm10GRCm38
MGSCv371746,637,554 - 46,683,337 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361745,963,794 - 46,009,577 (-)NCBIMGSCv36mm8
Celera1749,936,322 - 49,982,386 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Cul9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,109,889 - 9,147,526 (+)Ensembl
ChiLan1.0NW_0049554379,109,997 - 9,145,181 (+)NCBIChiLan1.0ChiLan1.0
CUL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,682,085 - 57,724,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,551,886 - 53,594,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,773,955 - 42,816,361 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,067,392 - 44,110,122 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,067,389 - 44,110,122 (+)EnsemblpanPan2panpan1.1
CUL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,674,408 - 11,714,578 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,676,271 - 11,714,578 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1211,701,389 - 11,741,555 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01212,156,979 - 12,196,916 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,157,064 - 12,196,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,684,308 - 11,724,237 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01211,768,727 - 11,808,627 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01211,863,521 - 11,903,458 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cul9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,180,814 - 47,216,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,743,202 - 16,779,298 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,743,221 - 16,779,293 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,224,332 - 38,263,425 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1738,224,023 - 38,263,429 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,724,604 - 43,763,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,928,167 - 28,982,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,927,967 - 28,982,483 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604443,241,772 - 43,286,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cul9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,335,626 - 16,368,926 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475416,335,466 - 16,371,313 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cul9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1483,319,533 - 83,359,506 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cul9
425 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:63
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000028786
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat

Markers in Region
BE113130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,470,606 - 14,470,766 (+)MAPPERmRatBN7.2
Rnor_6.0916,835,092 - 16,835,251NCBIRnor6.0
Rnor_5.0915,736,436 - 15,736,595UniSTSRnor5.0
RGSC_v3.499,854,235 - 9,854,394UniSTSRGSC3.4
Celera912,218,624 - 12,218,783UniSTS
RH 3.4 Map959.4UniSTS
Cytogenetic Map9q12UniSTS
BF413122  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.499,826,042 - 9,826,182UniSTSRGSC3.4
Celera912,209,520 - 12,209,660UniSTS
RH 3.4 Map958.9UniSTS
Cytogenetic Map9q12UniSTS
RH135253  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,437,626 - 14,437,807 (+)MAPPERmRatBN7.2
Rnor_6.0916,749,119 - 16,749,299NCBIRnor6.0
Rnor_5.0915,654,071 - 15,654,251UniSTSRnor5.0
RGSC_v3.499,799,533 - 9,799,713UniSTSRGSC3.4
Celera912,185,128 - 12,185,308UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map9q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000028786   ⟹   ENSRNOP00000028786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl916,749,809 - 16,843,910 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080815   ⟹   ENSRNOP00000073679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl921,933,803 - 21,977,145 (+)Ensembl
mRatBN7.2 Ensembl914,436,111 - 14,479,548 (+)Ensembl
Rnor_6.0 Ensembl916,747,662 - 16,844,057 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164147   ⟹   ENSRNOP00000104760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl921,933,803 - 21,977,145 (+)Ensembl
RefSeq Acc Id: NM_001191582   ⟹   NP_001178511
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,803 - 21,977,145 (+)NCBI
mRatBN7.2914,436,199 - 14,479,547 (+)NCBI
Rnor_6.0916,749,809 - 16,844,033 (+)NCBI
Rnor_5.0915,652,541 - 15,745,381 (+)NCBI
Celera912,185,789 - 12,227,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083508   ⟹   XP_038939436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,977,145 (+)NCBI
mRatBN7.2914,435,954 - 14,479,552 (+)NCBI
RefSeq Acc Id: XM_039083509   ⟹   XP_038939437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,977,145 (+)NCBI
mRatBN7.2914,435,953 - 14,479,552 (+)NCBI
RefSeq Acc Id: XM_039083510   ⟹   XP_038939438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,977,145 (+)NCBI
mRatBN7.2914,435,951 - 14,479,552 (+)NCBI
RefSeq Acc Id: XM_039083511   ⟹   XP_038939439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,706 - 21,977,145 (+)NCBI
mRatBN7.2914,435,952 - 14,479,552 (+)NCBI
RefSeq Acc Id: XM_039083512   ⟹   XP_038939440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,973,499 (+)NCBI
mRatBN7.2914,435,951 - 14,475,898 (+)NCBI
RefSeq Acc Id: XM_063267094   ⟹   XP_063123164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,977,145 (+)NCBI
RefSeq Acc Id: XR_005488889
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,973,497 (+)NCBI
mRatBN7.2914,435,950 - 14,477,012 (+)NCBI
RefSeq Acc Id: XR_005488890
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,699 - 21,967,916 (+)NCBI
mRatBN7.2914,435,948 - 14,470,316 (+)NCBI
RefSeq Acc Id: XR_005488891
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,967,916 (+)NCBI
mRatBN7.2914,435,955 - 14,470,316 (+)NCBI
RefSeq Acc Id: XR_010054591
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,933,702 - 21,969,429 (+)NCBI
RefSeq Acc Id: NP_001178511   ⟸   NM_001191582
- Sequence:
Ensembl Acc Id: ENSRNOP00000073679   ⟸   ENSRNOT00000080815
Ensembl Acc Id: ENSRNOP00000028786   ⟸   ENSRNOT00000028786
RefSeq Acc Id: XP_038939438   ⟸   XM_039083510
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939440   ⟸   XM_039083512
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038939439   ⟸   XM_039083511
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038939437   ⟸   XM_039083509
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939436   ⟸   XM_039083508
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K652 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123164   ⟸   XM_063267094
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000104760   ⟸   ENSRNOT00000164147
Protein Domains
Cullin family profile   DOC   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZP8-F1-model_v2 AlphaFold D3ZZP8 1-2514 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696517
Promoter ID:EPDNEW_R7041
Type:multiple initiation site
Name:Cul9_1
Description:cullin 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0916,747,678 - 16,747,738EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562008 AgrOrtholog
BioCyc Gene G2FUF-28229 BioCyc
Ensembl Genes ENSRNOG00000018372 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080815 ENTREZGENE
  ENSRNOT00000080815.3 UniProtKB/TrEMBL
  ENSRNOT00000164147 ENTREZGENE
  ENSRNOT00000164147.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.20.120.1750 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
  2.30.30.30 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Cullin, Chain C, Domain 2 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
InterPro Ananphase-promot_cplx_su10 UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  ARM_CUL7_CUL9 UniProtKB/TrEMBL
  BRcat_RBR_CUL9 UniProtKB/TrEMBL
  CPH_domain UniProtKB/TrEMBL
  CUL7/CUL9_N UniProtKB/TrEMBL
  Cullin UniProtKB/TrEMBL
  Cullin_CS UniProtKB/TrEMBL
  Cullin_homology UniProtKB/TrEMBL
  Cullin_homology_sf UniProtKB/TrEMBL
  Cullin_neddylation_domain UniProtKB/TrEMBL
  Galactose-bd-like UniProtKB/TrEMBL
  Rcat_RBR_CUL9 UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  Znf_C6HC UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 316228 ENTREZGENE
PANTHER CULLIN AND GALACTOSE-BINDING DOMAIN-CONTAINING UniProtKB/TrEMBL
  PTHR22771:SF2 UniProtKB/TrEMBL
Pfam APC10 UniProtKB/TrEMBL
  ARM_CUL7_CUL9 UniProtKB/TrEMBL
  Cul7 UniProtKB/TrEMBL
  DUF7058 UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
  IBR_1 UniProtKB/TrEMBL
PhenoGen Cul9 PhenoGen
PROSITE CULLIN_1 UniProtKB/TrEMBL
  CULLIN_2 UniProtKB/TrEMBL
  DOC UniProtKB/TrEMBL
  TRIAD UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018372 RatGTEx
SMART APC10 UniProtKB/TrEMBL
  Cullin_Nedd8 UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  Cullin_homology UniProtKB/TrEMBL
  Gal_bind_like UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0G2K652 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LVL0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Cul9  cullin 9  Parc  p53-associated parkin-like cytoplasmic protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Parc  p53-associated parkin-like cytoplasmic protein  RGD1562008_predicted  similar to p53-associated parkin-like cytoplasmic protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562008_predicted  similar to p53-associated parkin-like cytoplasmic protein (predicted)  LOC316228  similar to p53-associated parkin-like cytoplasmic protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC316228  similar to p53-associated parkin-like cytoplasmic protein      Symbol and Name status set to provisional 70820 PROVISIONAL