Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Galnt12 | Rat | Colorectal Neoplasms | | ISO | GALNT12 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Galnt12 | Rat | Colorectal Neoplasms | | ISO | GALNT12 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| # | Reference Title | Reference Citation |
| 1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
| 3. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
| 4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| Galnt12 (Rattus norvegicus - Norway rat) |
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| GALNT12 (Homo sapiens - human) |
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| Galnt12 (Mus musculus - house mouse) |
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| Galnt12 (Chinchilla lanigera - long-tailed chinchilla) |
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| GALNT12 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| GALNT12 (Canis lupus familiaris - dog) |
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| Galnt12 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| GALNT12 (Sus scrofa - pig) |
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| GALNT12 (Chlorocebus sabaeus - green monkey) |
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| Galnt12 (Heterocephalus glaber - naked mole-rat) |
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| Galnt12 (Rattus rattus - black rat) |
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Variants in Galnt12
258 total Variants
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| The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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| 16 | 11 | 67 | 160 | 91 | 90 | 59 | 92 | 59 | 6 | 355 | 191 | 11 | 134 | 81 | 92 | 31 | 17 | 17 |
| RefSeq Transcripts | NM_001426999 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_001066416 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039111024 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_005504746 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | JAXUCZ010000005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSRNOT00000011112 ⟹ ENSRNOP00000011112 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000107356 ⟹ ENSRNOP00000076997 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001426999 ⟹ NP_001413928 | ||||||||
| RefSeq Status: | VALIDATED | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_039111024 ⟹ XP_038966952 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XR_005504746 | ||||||||||||
| Type: | NON-CODING | ||||||||||||
| Position: |
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| Protein RefSeqs | NP_001413928 | (Get FASTA) | NCBI Sequence Viewer |
| XP_038966952 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSRNOP00000011112 | ||
| ENSRNOP00000011112.7 |
| Ensembl Acc Id: | ENSRNOP00000011112 ⟸ ENSRNOT00000011112 |
| RefSeq Acc Id: | XP_038966952 ⟸ XM_039111024 |
| - Peptide Label: | isoform X1 |
| Ensembl Acc Id: | ENSRNOP00000076997 ⟸ ENSRNOT00000107356 |
| RefSeq Acc Id: | NP_001413928 ⟸ NM_001426999 |
| - Peptide Label: | precursor |
| - UniProtKB: | D4A849 (UniProtKB/TrEMBL) |
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
| RGD ID: | 13693719 | ||||||||
| Promoter ID: | EPDNEW_R4242 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Galnt12_1 | ||||||||
| Description: | polypeptide N-acetylgalactosaminyltransferase 12 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1562001 | AgrOrtholog |
| BioCyc Gene | G2FUF-41390 | BioCyc |
| BioCyc Pathway | PWY-7433 [mucin core 1 and core 2 O-glycosylation] | BioCyc |
| PWY-7435 [mucin core 3 and core 4 O-glycosylation] | BioCyc | |
| BioCyc Pathway Image | PWY-7433 | BioCyc |
| PWY-7435 | BioCyc | |
| Ensembl Genes | ENSRNOG00000008099 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000011112 | ENTREZGENE |
| ENSRNOT00000011112.8 | UniProtKB/TrEMBL | |
| Gene3D-CATH | 2.80.10.50 | UniProtKB/TrEMBL |
| Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A | UniProtKB/TrEMBL | |
| InterPro | GalNAc-T | UniProtKB/TrEMBL |
| Glyco_trans_2 | UniProtKB/TrEMBL | |
| Nucleotide-diphossugar_trans | UniProtKB/TrEMBL | |
| Ricin_B-like_lectins | UniProtKB/TrEMBL | |
| Ricin_B_lectin | UniProtKB/TrEMBL | |
| NCBI Gene | 313233 | ENTREZGENE |
| PANTHER | N-ACETYLGALACTOSAMINYLTRANSFERASE | UniProtKB/TrEMBL |
| POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 12 | UniProtKB/TrEMBL | |
| Pfam | Glycos_transf_2 | UniProtKB/TrEMBL |
| Ricin_B_lectin | UniProtKB/TrEMBL | |
| PhenoGen | Galnt12 | PhenoGen |
| PROSITE | RICIN_B_LECTIN | UniProtKB/TrEMBL |
| RatGTEx | ENSRNOG00000008099 | RatGTEx |
| SMART | RICIN | UniProtKB/TrEMBL |
| Superfamily-SCOP | RicinB_like | UniProtKB/TrEMBL |
| SSF53448 | UniProtKB/TrEMBL | |
| UniProt | D4A849 | ENTREZGENE, UniProtKB/TrEMBL |
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2014-04-30 | Galnt12 | polypeptide N-acetylgalactosaminyltransferase 12 | Galnt12 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-10-17 | Galnt12 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) | Galnt12 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | Galnt12 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 | Galnt12_predicted | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2006-04-05 | Galnt12_predicted | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (predicted) | RGD1562001_predicted | similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (predicted) | Symbol and Name updated | 1299863 | APPROVED |
| 2006-03-10 | RGD1562001_predicted | similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (predicted) | Name updated | 1299863 | APPROVED | ||
| 2006-03-07 | RGD1562001_predicted | similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (predicted) | LOC313233 | similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 | Symbol and Name status set to approved | 1299863 | APPROVED |
| 2006-02-09 | LOC313233 | similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |