Sytl3 (synaptotagmin-like 3) - Rat Genome Database

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Gene: Sytl3 (synaptotagmin-like 3) Rattus norvegicus
Analyze
Symbol: Sytl3
Name: synaptotagmin-like 3
RGD ID: 1561992
Description: Predicted to enable calcium-dependent phospholipid binding activity and neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to be located in membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL3 (synaptotagmin like 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC499017; RGD1561992; similar to synaptotagmin-like protein 3-a; synaptotagmin-like protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,300,935 - 49,372,533 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl149,302,182 - 49,372,531 (+)EnsemblGRCr8
mRatBN7.2146,896,308 - 46,967,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,911,217 - 46,967,460 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx147,460,176 - 47,516,406 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,447,437 - 53,503,677 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,535,610 - 47,591,852 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,216,988 - 47,287,372 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,231,093 - 47,287,371 (+)Ensemblrn6Rnor6.0
Rnor_5.0148,520,061 - 48,591,365 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4141,121,373 - 41,177,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera142,598,861 - 42,655,031 (+)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endomembrane system  (IEA)
exocytic vesicle  (IBA)
membrane  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11243866   PMID:12477932   PMID:12590134  


Genomics

Comparative Map Data
Sytl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,300,935 - 49,372,533 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl149,302,182 - 49,372,531 (+)EnsemblGRCr8
mRatBN7.2146,896,308 - 46,967,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,911,217 - 46,967,460 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx147,460,176 - 47,516,406 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,447,437 - 53,503,677 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,535,610 - 47,591,852 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,216,988 - 47,287,372 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,231,093 - 47,287,371 (+)Ensemblrn6Rnor6.0
Rnor_5.0148,520,061 - 48,591,365 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4141,121,373 - 41,177,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera142,598,861 - 42,655,031 (+)NCBICelera
Cytogenetic Map1q11NCBI
SYTL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,644,936 - 158,764,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,644,387 - 158,768,355 (+)Ensemblhg38GRCh38
GRCh376159,071,086 - 159,185,903 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,991,034 - 159,105,889 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346159,041,508 - 159,156,311NCBI
Celera6159,719,041 - 159,833,917 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,541,943 - 156,656,442 (+)NCBIHuRef
CHM1_16159,333,606 - 159,448,611 (+)NCBICHM1_1
T2T-CHM13v2.06159,886,606 - 160,010,070 (+)NCBIT2T-CHM13v2.0
Sytl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,925,633 - 7,005,449 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,926,492 - 7,005,443 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38176,658,133 - 6,738,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,659,093 - 6,738,044 (+)Ensemblmm10GRCm38
MGSCv37176,877,960 - 6,942,393 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36176,523,269 - 6,587,494 (+)NCBIMGSCv36mm8
Celera1514,732,754 - 14,737,852 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map174.33NCBI
Sytl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554393,741,185 - 3,813,670 (-)Ensembl
ChiLan1.0NW_0049554393,740,044 - 3,825,954 (-)NCBIChiLan1.0ChiLan1.0
SYTL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,751,597 - 178,868,789 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16176,655,495 - 176,774,134 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06156,537,572 - 156,655,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16161,552,602 - 161,669,609 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6161,559,559 - 161,669,609 (+)EnsemblpanPan2panpan1.1
SYTL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,066,449 - 48,159,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,067,612 - 48,159,936 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha148,911,648 - 49,004,972 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0148,252,730 - 48,346,099 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl148,259,345 - 48,346,110 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1148,129,399 - 48,222,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,000,111 - 48,093,753 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,559,600 - 48,653,168 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sytl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,094,445 - 143,161,127 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648910,352,904 - 10,412,918 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648910,384,060 - 10,413,122 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYTL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,453,283 - 8,546,530 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.118,452,822 - 8,546,637 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,432,694 - 10,498,575 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYTL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11386,242,087 - 86,342,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1386,242,109 - 86,341,818 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604058,598,161 - 58,720,449 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sytl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624929874,471 - 953,246 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624929874,246 - 969,213 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sytl3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12192,422,536 - 192,491,682 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sytl3
449 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:87
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000024967
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat

Markers in Region
RH137637  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2146,967,202 - 46,967,328 (+)MAPPERmRatBN7.2
Rnor_6.0147,287,114 - 47,287,239NCBIRnor6.0
Rnor_5.0148,590,213 - 48,590,338UniSTSRnor5.0
RGSC_v3.4141,177,437 - 41,177,562UniSTSRGSC3.4
Celera142,654,773 - 42,654,898UniSTS
RH 3.4 Map1538.8UniSTS
Cytogenetic Map1q11UniSTS
RH127410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2146,967,667 - 46,967,854 (+)MAPPERmRatBN7.2
Rnor_6.0147,287,579 - 47,287,765NCBIRnor6.0
Rnor_5.0148,590,678 - 48,590,864UniSTSRnor5.0
RGSC_v3.4141,177,902 - 41,178,088UniSTSRGSC3.4
Celera142,655,238 - 42,655,424UniSTS
RH 3.4 Map1541.1UniSTS
Cytogenetic Map1q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 57 150 87 86 55 92 55 6 341 181 11 129 81 90 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000024967   ⟹   ENSRNOP00000024967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,302,182 - 49,372,531 (+)Ensembl
mRatBN7.2 Ensembl146,911,217 - 46,967,460 (+)Ensembl
Rnor_6.0 Ensembl147,231,093 - 47,287,371 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161748   ⟹   ENSRNOP00000108013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl149,302,182 - 49,372,531 (+)Ensembl
RefSeq Acc Id: NM_001127560   ⟹   NP_001121032
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,316,293 - 49,372,533 (+)NCBI
mRatBN7.2146,911,217 - 46,967,461 (+)NCBI
Rnor_6.0147,231,093 - 47,287,372 (+)NCBI
Rnor_5.0148,520,061 - 48,591,365 (+)NCBI
RGSC_v3.4141,121,373 - 41,177,695 (+)RGD
Celera142,598,861 - 42,655,031 (+)RGD
Sequence:
RefSeq Acc Id: XM_006227888   ⟹   XP_006227950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,300,936 - 49,372,533 (+)NCBI
mRatBN7.2146,896,308 - 46,967,461 (+)NCBI
Rnor_6.0147,216,988 - 47,287,372 (+)NCBI
Rnor_5.0148,520,061 - 48,591,365 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589549   ⟹   XP_017445038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,304,554 - 49,372,533 (+)NCBI
mRatBN7.2146,899,523 - 46,967,461 (+)NCBI
Rnor_6.0147,219,275 - 47,287,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086845   ⟹   XP_038942773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,308,448 - 49,372,533 (+)NCBI
mRatBN7.2146,903,412 - 46,967,461 (+)NCBI
RefSeq Acc Id: XM_039086856   ⟹   XP_038942784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,308,448 - 49,372,533 (+)NCBI
mRatBN7.2146,903,417 - 46,967,461 (+)NCBI
RefSeq Acc Id: XM_039086870   ⟹   XP_038942798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,307,772 - 49,369,077 (+)NCBI
mRatBN7.2146,903,412 - 46,964,005 (+)NCBI
RefSeq Acc Id: XM_063270702   ⟹   XP_063126772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,300,935 - 49,372,533 (+)NCBI
RefSeq Acc Id: NP_001121032   ⟸   NM_001127560
- UniProtKB: B2RYA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227950   ⟸   XM_006227888
- Peptide Label: isoform X1
- UniProtKB: E9PU77 (UniProtKB/TrEMBL),   B2RYA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445038   ⟸   XM_017589549
- Peptide Label: isoform X1
- UniProtKB: E9PU77 (UniProtKB/TrEMBL),   B2RYA4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024967   ⟸   ENSRNOT00000024967
RefSeq Acc Id: XP_038942773   ⟸   XM_039086845
- Peptide Label: isoform X1
- UniProtKB: E9PU77 (UniProtKB/TrEMBL),   B2RYA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942798   ⟸   XM_039086870
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038942784   ⟸   XM_039086856
- Peptide Label: isoform X1
- UniProtKB: E9PU77 (UniProtKB/TrEMBL),   B2RYA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126772   ⟸   XM_063270702
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000108013   ⟸   ENSRNOT00000161748
Protein Domains
C2   RabBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PU77-F1-model_v2 AlphaFold E9PU77 1-608 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561992 AgrOrtholog
BioCyc Gene G2FUF-61615 BioCyc
Ensembl Genes ENSRNOG00000018321 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024967 ENTREZGENE
  ENSRNOT00000024967.6 UniProtKB/TrEMBL
  ENSRNOT00000161748 ENTREZGENE
  ENSRNOT00000161748.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5599231 IMAGE-MGC_LOAD
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  FYVE_2 UniProtKB/TrEMBL
  Rab-bd_domain UniProtKB/TrEMBL
  SYTL1-5_C2B UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:499017 UniProtKB/TrEMBL
MGC_CLONE MGC:188395 IMAGE-MGC_LOAD
NCBI Gene 499017 ENTREZGENE
PANTHER BITESIZE, ISOFORM I UniProtKB/TrEMBL
  BITESIZE, ISOFORM I UniProtKB/TrEMBL
Pfam FYVE_2 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PhenoGen Sytl3 PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
  RABBD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018321 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
UniProt A0ABK0LZX4_RAT UniProtKB/TrEMBL
  B2RYA4 ENTREZGENE, UniProtKB/TrEMBL
  E9PU77 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Sytl3  synaptotagmin-like 3  RGD1561992_predicted  similar to synaptotagmin-like protein 3-a (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561992_predicted  similar to synaptotagmin-like protein 3-a (predicted)  LOC499017  similar to synaptotagmin-like protein 3-a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499017  similar to synaptotagmin-like protein 3-a      Symbol and Name status set to provisional 70820 PROVISIONAL