Surf4 (surfeit 4) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Surf4 (surfeit 4) Rattus norvegicus
Analyze
Symbol: Surf4 (Ensembl: Surf1)
Name: surfeit 4 (Ensembl:SURF1, cytochrome c oxidase assembly factor)
RGD ID: 1561980
Description: Orthologous to human SURF4 (surfeit 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102553670; LOC296598; surfeit locus protein 4; surfeit locus protein 4-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,646,435 - 30,659,641 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl330,638,299 - 30,661,390 (-)EnsemblGRCr8
mRatBN7.2310,248,360 - 10,261,537 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx313,308,351 - 13,321,218 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,893,752 - 21,906,619 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,149,053 - 20,161,920 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,468,284 - 5,481,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl35,461,770 - 5,483,239 (-)Ensemblrn6Rnor6.0
Rnor_5.0310,830,194 - 10,843,439 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,817,200 - 5,830,060 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera35,046,390 - 5,059,250 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzbromarone  (EXP)
benzene  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
fenthion  (ISO)
folic acid  (ISO)
genistein  (ISO)
indometacin  (ISO)
isoflurane  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
nitrates  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP)
resveratrol  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:15308636   PMID:18287528   PMID:31505169  


Genomics

Comparative Map Data
Surf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,646,435 - 30,659,641 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl330,638,299 - 30,661,390 (-)EnsemblGRCr8
mRatBN7.2310,248,360 - 10,261,537 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx313,308,351 - 13,321,218 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,893,752 - 21,906,619 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,149,053 - 20,161,920 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,468,284 - 5,481,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl35,461,770 - 5,483,239 (-)Ensemblrn6Rnor6.0
Rnor_5.0310,830,194 - 10,843,439 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,817,200 - 5,830,060 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera35,046,390 - 5,059,250 (-)NCBICelera
Cytogenetic Map3p13NCBI
SURF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,361,464 - 133,377,949 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,361,450 - 133,376,166 (-)Ensemblhg38GRCh38
GRCh379136,228,340 - 136,244,820 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,218,161 - 135,232,791 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349133,257,894 - 133,272,524NCBI
Celera9106,778,819 - 106,793,454 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,728,225 - 105,744,731 (-)NCBIHuRef
CHM1_19136,378,468 - 136,394,946 (-)NCBICHM1_1
T2T-CHM13v2.09145,575,418 - 145,591,909 (-)NCBIT2T-CHM13v2.0
Surf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,810,052 - 26,823,801 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,810,052 - 26,823,940 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38226,920,041 - 26,933,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,920,040 - 26,933,928 (-)Ensemblmm10GRCm38
MGSCv37226,775,561 - 26,789,031 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36226,742,048 - 26,755,937 (-)NCBIMGSCv36mm8
Celera226,629,786 - 26,643,256 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.1NCBI
Surf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,714,321 - 2,720,073 (-)Ensembl
ChiLan1.0NW_0049555132,715,638 - 2,719,537 (-)NCBIChiLan1.0ChiLan1.0
SURF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2115,976,994 - 5,991,792 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan195,979,330 - 5,994,128 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,484,792 - 104,499,508 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19133,096,353 - 133,103,007 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,096,353 - 133,103,007 (-)EnsemblpanPan2panpan1.1
SURF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,793,971 - 49,806,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,795,890 - 49,799,319 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha949,077,425 - 49,088,503 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0950,669,979 - 50,681,072 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,668,011 - 50,681,085 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,432,410 - 49,443,469 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,773,905 - 49,784,941 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,851,901 - 49,862,981 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Surf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,852,847 - 199,857,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366693,518,420 - 3,523,798 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366693,518,616 - 3,523,808 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SURF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,975,160 - 272,988,688 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11272,975,164 - 272,988,683 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SURF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,759,307 - 4,775,227 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,759,388 - 4,776,219 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666058213,415 - 229,223 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Surf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,822,052 - 1,833,426 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247601,823,688 - 1,833,438 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Surf4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v159,721,826 - 9,734,652 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Surf4
129 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:93
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000007573
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH128837  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,248,455 - 10,248,639 (+)MAPPERmRatBN7.2
Rnor_6.035,468,380 - 5,468,563NCBIRnor6.0
Rnor_6.034,876,453 - 4,876,636NCBIRnor6.0
Rnor_5.0310,231,650 - 10,231,833UniSTSRnor5.0
Rnor_5.0310,830,290 - 10,830,473UniSTSRnor5.0
RGSC_v3.435,817,296 - 5,817,479UniSTSRGSC3.4
Celera35,046,486 - 5,046,669UniSTS
Cytogenetic Map3p12UniSTS
BI280930  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,248,203 - 10,248,372 (+)MAPPERmRatBN7.2
Rnor_6.034,876,201 - 4,876,369NCBIRnor6.0
Rnor_6.035,468,128 - 5,468,296NCBIRnor6.0
Rnor_5.0310,231,398 - 10,231,566UniSTSRnor5.0
Rnor_5.0310,830,038 - 10,830,206UniSTSRnor5.0
RGSC_v3.435,817,044 - 5,817,212UniSTSRGSC3.4
Celera35,046,234 - 5,046,402UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000061242   ⟹   ENSRNOP00000057954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl330,638,299 - 30,661,390 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000071754   ⟹   ENSRNOP00000065447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl330,646,420 - 30,659,295 (-)Ensembl
mRatBN7.2 Ensembl310,241,842 - 10,263,315 (-)Ensembl
Rnor_6.0 Ensembl35,461,770 - 5,483,239 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078429   ⟹   ENSRNOP00000069197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,248,384 - 10,261,161 (-)Ensembl
Rnor_6.0 Ensembl35,468,285 - 5,481,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098956   ⟹   ENSRNOP00000084034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl330,639,912 - 30,652,998 (-)Ensembl
mRatBN7.2 Ensembl310,241,837 - 10,255,475 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116949   ⟹   ENSRNOP00000097705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118510   ⟹   ENSRNOP00000092828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl330,639,917 - 30,661,390 (-)Ensembl
RefSeq Acc Id: NM_001033868   ⟹   NP_001029040
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,646,435 - 30,659,295 (-)NCBI
mRatBN7.2310,248,360 - 10,261,220 (-)NCBI
Rnor_6.035,468,284 - 5,481,144 (-)NCBI
Rnor_5.0310,830,194 - 10,843,439 (-)NCBI
RGSC_v3.435,817,200 - 5,830,060 (-)RGD
Celera35,046,390 - 5,059,250 (-)RGD
Sequence:
RefSeq Acc Id: XM_017592017   ⟹   XP_017447506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,646,435 - 30,659,641 (-)NCBI
mRatBN7.2310,248,364 - 10,261,537 (-)NCBI
Rnor_6.035,469,838 - 5,481,447 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001029040 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447506 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93452 (Get FASTA)   NCBI Sequence Viewer  
  EDL93453 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000057954.6
  ENSRNOP00000065447
  ENSRNOP00000084034.2
RefSeq Acc Id: NP_001029040   ⟸   NM_001033868
- UniProtKB: D4A1D8 (UniProtKB/TrEMBL),   A6JTJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447506   ⟸   XM_017592017
- Peptide Label: isoform X1
- UniProtKB: D4A1D8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069197   ⟸   ENSRNOT00000078429
Ensembl Acc Id: ENSRNOP00000065447   ⟸   ENSRNOT00000071754
Ensembl Acc Id: ENSRNOP00000084034   ⟸   ENSRNOT00000098956
Ensembl Acc Id: ENSRNOP00000097705   ⟸   ENSRNOT00000116949
Ensembl Acc Id: ENSRNOP00000092828   ⟸   ENSRNOT00000118510
Ensembl Acc Id: ENSRNOP00000057954   ⟸   ENSRNOT00000061242

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691918
Promoter ID:EPDNEW_R2443
Type:initiation region
Name:Surf4_1
Description:surfeit 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.035,481,128 - 5,481,188EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561980 AgrOrtholog
BioCyc Gene G2FUF-50318 BioCyc
Ensembl Genes ENSRNOG00000005247 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000060005 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061242.7 UniProtKB/TrEMBL
  ENSRNOT00000071754 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000098956.2 UniProtKB/TrEMBL
InterPro Surf1/Shy1 UniProtKB/TrEMBL
  Surf1/Surf4 UniProtKB/TrEMBL
  Surf4 UniProtKB/TrEMBL
KEGG Report rno:619346 UniProtKB/TrEMBL
NCBI Gene 619346 ENTREZGENE
PANTHER PTHR23427 UniProtKB/TrEMBL
  SURFEIT LOCUS PROTEIN 4 UniProtKB/TrEMBL
Pfam SURF1 UniProtKB/TrEMBL
  SURF4 UniProtKB/TrEMBL
PhenoGen Surf4 PhenoGen
PROSITE SURF1 UniProtKB/TrEMBL
  SURF4 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005247 RatGTEx
  ENSRNOG00000060005 RatGTEx
UniProt A0A8I5ZX53_RAT UniProtKB/TrEMBL
  A0A8L2UMZ7_RAT UniProtKB/TrEMBL
  A6JTJ4 ENTREZGENE, UniProtKB/TrEMBL
  A6JTJ5_RAT UniProtKB/TrEMBL
  D4A1D8 ENTREZGENE
  Q7TP91_RAT UniProtKB/TrEMBL
UniProt Secondary M0R7L5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Surf4  surfeit 4  LOC102553670  surfeit locus protein 4-like  Data merged from RGD:7570096 737654 PROVISIONAL
2013-12-18 LOC102553670  surfeit locus protein 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-07-08 Surf4  surfeit 4  Surf4_predicted  surfeit gene 4 (predicted)  Data merged from RGD:1311200 1643240 APPROVED
2006-02-09 Surf4  surfeit 4      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Surf4_predicted  surfeit gene 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED