Nhs (NHS actin remodeling regulator) - Rat Genome Database

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Gene: Nhs (NHS actin remodeling regulator) Rattus norvegicus
Analyze
Symbol: Nhs
Name: NHS actin remodeling regulator
RGD ID: 1561818
Description: Predicted to be involved in cell differentiation and lens development in camera-type eye. Predicted to be located in Golgi apparatus; cell junction; and nuclear body. Human ortholog(s) of this gene implicated in Nance-Horan syndrome and cataract 40. Orthologous to human NHS (NHS actin remodeling regulator); INTERACTS WITH bisphenol A; gentamycin; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: actin remodeling regulator NHS; LOC317494; Nance-Horan syndrome (congenital cataracts and dental anomalies); Nance-Horan syndrome (human); Nance-Horan syndrome protein; RGD1561818; similar to Nance-Horan syndrome protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X36,185,067 - 36,524,711 (+)NCBIGRCr8
mRatBN7.2X32,553,300 - 32,892,961 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX32,552,026 - 32,889,992 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX33,582,578 - 33,916,873 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X37,022,712 - 37,359,427 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X33,207,548 - 33,541,837 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X34,312,102 - 34,675,912 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX34,623,405 - 34,673,742 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X34,656,286 - 35,018,650 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X53,321,827 - 53,720,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX32,845,030 - 33,180,545 (+)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell junction  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
nuclear body  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. New mutations in the NHS gene in Nance-Horan Syndrome families from the Netherlands. Florijn RJ, etal., Eur J Hum Genet. 2006 Sep;14(9):986-90. Epub 2006 May 31.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8282045  


Genomics

Comparative Map Data
Nhs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X36,185,067 - 36,524,711 (+)NCBIGRCr8
mRatBN7.2X32,553,300 - 32,892,961 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX32,552,026 - 32,889,992 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX33,582,578 - 33,916,873 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X37,022,712 - 37,359,427 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X33,207,548 - 33,541,837 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X34,312,102 - 34,675,912 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX34,623,405 - 34,673,742 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X34,656,286 - 35,018,650 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X53,321,827 - 53,720,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX32,845,030 - 33,180,545 (+)NCBICelera
Cytogenetic MapXq14NCBI
NHS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X17,375,200 - 17,735,994 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX17,375,200 - 17,735,994 (+)EnsemblGRCh38hg38GRCh38
GRCh37X17,393,323 - 17,754,114 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X17,303,464 - 17,664,035 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X17,153,199 - 17,513,768NCBI
CeleraX21,515,624 - 21,873,432 (+)NCBICelera
Cytogenetic MapXp22.2-p22.13NCBI
HuRefX15,153,213 - 15,512,673 (+)NCBIHuRef
CHM1_1X17,424,184 - 17,784,494 (+)NCBICHM1_1
T2T-CHM13v2.0X16,957,799 - 17,318,610 (+)NCBIT2T-CHM13v2.0
Nhs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X160,616,286 - 160,942,437 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX160,616,292 - 160,942,726 (-)EnsemblGRCm39 Ensembl
GRCm38X161,833,290 - 162,159,441 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX161,833,296 - 162,159,730 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X158,274,200 - 158,597,722 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X157,180,373 - 157,503,895 (-)NCBIMGSCv36mm8
CeleraX145,069,096 - 145,393,381 (-)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX74.17NCBI
Nhs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955519599,682 - 918,762 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955519596,216 - 919,352 (-)NCBIChiLan1.0ChiLan1.0
NHS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X19,163,540 - 19,534,073 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X19,166,931 - 19,538,278 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X9,988,584 - 10,359,110 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X17,357,898 - 17,728,178 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX17,358,416 - 17,728,178 (+)Ensemblpanpan1.1panPan2
NHS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X13,487,919 - 13,834,869 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX13,488,515 - 13,831,386 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX13,339,834 - 13,686,761 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X13,451,227 - 13,798,368 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX13,451,793 - 13,795,287 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X13,518,311 - 13,864,906 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X13,504,402 - 13,851,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X13,573,553 - 13,920,854 (+)NCBIUU_Cfam_GSD_1.0
Nhs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X6,887,249 - 6,971,110 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364706,919,623 - 6,971,125 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364706,632,724 - 6,967,878 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX14,097,006 - 14,206,568 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X13,854,950 - 14,209,085 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X14,951,338 - 15,302,337 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NHS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X15,803,386 - 16,183,809 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX16,168,609 - 16,183,787 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605617,683,202 - 18,052,952 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nhs
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248292,186,048 - 2,517,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248292,185,410 - 2,520,869 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nhs
1229 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:79
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000041924
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat

Markers in Region
DXRat25  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X32,665,143 - 32,665,260 (+)MAPPERmRatBN7.2
Rnor_6.0X34,424,518 - 34,424,634NCBIRnor6.0
Rnor_5.0X34,768,466 - 34,768,582UniSTSRnor5.0
CeleraX32,956,567 - 32,956,683UniSTS
RH 3.4 MapX474.4UniSTS
RH 3.4 MapX474.4RGD
RH 2.0 Map21361.4RGD
FHH x ACI MapX14.5099RGD
Cytogenetic MapXq21UniSTS
DXGot26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X32,632,625 - 32,632,857 (+)MAPPERmRatBN7.2
Rnor_6.0X34,392,155 - 34,392,386NCBIRnor6.0
Rnor_5.0X34,735,954 - 34,736,185UniSTSRnor5.0
RGSC_v3.4X53,457,104 - 53,457,336RGDRGSC3.4
RGSC_v3.4X53,457,105 - 53,457,336UniSTSRGSC3.4
RGSC_v3.1X53,510,574 - 53,510,805RGD
CeleraX32,924,132 - 32,924,363UniSTS
RH 3.4 MapX464.9UniSTS
RH 3.4 MapX464.9RGD
RH 2.0 Map21358.3RGD
Cytogenetic MapXq21UniSTS
AW527792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X32,718,432 - 32,718,567 (+)MAPPERmRatBN7.2
Rnor_6.0X34,477,929 - 34,478,063NCBIRnor6.0
Rnor_5.0X34,821,916 - 34,822,050UniSTSRnor5.0
RGSC_v3.4X53,542,979 - 53,543,113UniSTSRGSC3.4
CeleraX33,009,500 - 33,009,634UniSTS
RH 3.4 MapX474.4UniSTS
Cytogenetic MapXq21UniSTS
RH133422  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X32,552,422 - 32,552,609 (+)MAPPERmRatBN7.2
Rnor_6.0X34,312,689 - 34,312,875NCBIRnor6.0
Rnor_5.0X34,656,540 - 34,656,726UniSTSRnor5.0
RGSC_v3.4X53,320,950 - 53,321,136UniSTSRGSC3.4
CeleraX32,844,153 - 32,844,339UniSTS
RH 3.4 MapX467.1UniSTS
Cytogenetic MapXq21UniSTS
fi17a01.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22176,807,742 - 176,807,800 (-)MAPPERmRatBN7.2
mRatBN7.2X32,555,266 - 32,555,943 (+)MAPPERmRatBN7.2
Rnor_6.0X34,315,533 - 34,316,209NCBIRnor6.0
Rnor_6.02190,570,717 - 190,570,774NCBIRnor6.0
Rnor_5.02214,303,158 - 214,303,215UniSTSRnor5.0
Rnor_5.0X34,659,384 - 34,660,060UniSTSRnor5.0
RGSC_v3.4X53,323,794 - 53,324,470UniSTSRGSC3.4
RGSC_v3.42183,795,076 - 183,795,133UniSTSRGSC3.4
Celera2173,769,534 - 173,769,591UniSTS
CeleraX32,846,997 - 32,847,673UniSTS
Cytogenetic MapXq21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 79 78 47 25 47 6 205 96 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000041924   ⟹   ENSRNOP00000039704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX32,552,026 - 32,889,992 (+)Ensembl
Rnor_6.0 EnsemblX34,623,405 - 34,672,940 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091746   ⟹   ENSRNOP00000070291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX32,552,026 - 32,889,992 (+)Ensembl
Rnor_6.0 EnsemblX34,630,048 - 34,673,742 (+)Ensembl
RefSeq Acc Id: NM_001191733   ⟹   NP_001178662
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X36,185,067 - 36,521,739 (+)NCBI
mRatBN7.2X32,553,300 - 32,889,992 (+)NCBI
Rnor_6.0X34,313,566 - 34,672,940 (+)NCBI
Rnor_5.0X34,656,286 - 35,018,650 (+)NCBI
CeleraX32,845,030 - 33,180,545 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001414726   ⟹   NP_001401655
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X36,185,067 - 36,524,708 (+)NCBI
mRatBN7.2X32,553,300 - 32,892,961 (+)NCBI
RefSeq Acc Id: XM_008773173   ⟹   XP_008771395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X36,392,388 - 36,524,711 (+)NCBI
mRatBN7.2X32,783,851 - 32,892,961 (+)NCBI
Rnor_6.0X34,569,870 - 34,675,912 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602085   ⟹   XP_017457574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X36,431,116 - 36,524,711 (+)NCBI
mRatBN7.2X32,799,376 - 32,892,961 (+)NCBI
Rnor_6.0X34,589,036 - 34,675,912 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001178662 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401655 (Get FASTA)   NCBI Sequence Viewer  
  XP_008771395 (Get FASTA)   NCBI Sequence Viewer  
  XP_017457574 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039704.6
  ENSRNOP00000070291.2
RefSeq Acc Id: NP_001178662   ⟸   NM_001191733
- Peptide Label: isoform 2
- UniProtKB: F1LU76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771395   ⟸   XM_008773173
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017457574   ⟸   XM_017602085
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000039704   ⟸   ENSRNOT00000041924
Ensembl Acc Id: ENSRNOP00000070291   ⟸   ENSRNOT00000091746
RefSeq Acc Id: NP_001401655   ⟸   NM_001414726
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JXJ0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LU76-F1-model_v2 AlphaFold F1LU76 1-1442 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561818 AgrOrtholog
BioCyc Gene G2FUF-2522 BioCyc
Ensembl Genes ENSRNOG00000030759 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041924.6 UniProtKB/TrEMBL
  ENSRNOT00000091746.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.340 UniProtKB/TrEMBL
InterPro NHS_fam UniProtKB/TrEMBL
NCBI Gene 317494 ENTREZGENE
PANTHER NANCE-HORAN SYNDROME PROTEIN UniProtKB/TrEMBL
  NANCE-HORAN SYNDROME PROTEIN UniProtKB/TrEMBL
Pfam NHS UniProtKB/TrEMBL
PhenoGen Nhs PhenoGen
RatGTEx ENSRNOG00000030759 RatGTEx
UniProt A0A0G2JXJ0 ENTREZGENE, UniProtKB/TrEMBL
  F1LU76 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Nhs  NHS actin remodeling regulator  Nhs  Nance-Horan syndrome (congenital cataracts and dental anomalies)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-22 Nhs  Nance-Horan syndrome (congenital cataracts and dental anomalies)  Nhs  Nance-Horan syndrome (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Nhs  Nance-Horan syndrome (human)  RGD1561818_predicted  similar to Nance-Horan syndrome protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561818_predicted  similar to Nance-Horan syndrome protein (predicted)  LOC317494  similar to Nance-Horan syndrome protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC317494  similar to Nance-Horan syndrome protein      Symbol and Name status set to provisional 70820 PROVISIONAL