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Gene: C10h16orf90 (similar to human chromosome 16 open reading frame 90) Rattus norvegicus

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Symbol:

C10h16orf90

Name:

similar to human chromosome 16 open reading frame 90

RGD ID:

1561796

Description:

Orthologous to human C16orf90 (chromosome 16 open reading frame 90); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical LOC360483; LOC103690212; LOC360483; RGD1561796; RGD1561796; uncharacterized LOC103690212; uncharacterized protein C16orf90 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	12,125,235 - 12,138,441 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	12,125,212 - 12,128,109 (+)	Ensembl				GRCr8
mRatBN7.2	10	11,618,867 - 11,632,151 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	11,618,348 - 11,629,910 (+)	Ensembl				mRatBN7.2
Rnor_6.0	10	11,878,043 - 11,880,822 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	11,877,903 - 11,891,099 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	10,634,202 - 10,647,406 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	11,886,572 - 11,889,287 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	10,575,576 - 10,578,355 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acrylamide (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

bisphenol A (EXP)

cadmium dichloride (EXP)

fulvestrant (ISO)

furan (EXP)

manganese(II) chloride (EXP)

poly(I:C) (EXP)

tebuconazole (ISO)

trichloroethene (EXP)

troglitazone (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

C10h16orf90
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	12,125,235 - 12,138,441 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	12,125,212 - 12,128,109 (+)	Ensembl				GRCr8
mRatBN7.2	10	11,618,867 - 11,632,151 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	11,618,348 - 11,629,910 (+)	Ensembl				mRatBN7.2
Rnor_6.0	10	11,878,043 - 11,880,822 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	11,877,903 - 11,891,099 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	10,634,202 - 10,647,406 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	11,886,572 - 11,889,287 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	10,575,576 - 10,578,355 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

C16orf90
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	3,493,484 - 3,496,652 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	3,493,484 - 3,495,489 (-)	Ensembl			hg38	GRCh38
GRCh37	16	3,543,484 - 3,546,652 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	3,483,485 - 3,485,422 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	3,750,264 - 3,752,201 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	3,513,143 - 3,515,080 (-)	NCBI		HuRef
CHM1_1	16	3,543,566 - 3,545,503 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	3,520,742 - 3,523,910 (-)	NCBI		T2T-CHM13v2.0

1700037C18Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	3,723,662 - 3,726,553 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	3,713,043 - 3,726,553 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	3,905,798 - 3,908,689 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	3,895,179 - 3,908,689 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	3,905,798 - 3,908,689 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	3,821,029 - 3,823,888 (-)	NCBI		MGSCv36	mm8
Celera	16	4,536,289 - 4,539,182 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.29	NCBI

CUNH16orf90
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955442	13,890,284 - 13,892,362 (+)	NCBI	ChiLan1.0	ChiLan1.0

C18H16orf90
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	4,014,354 - 4,023,755 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	7,797,982 - 7,807,326 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	2,415,638 - 2,419,093 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	3,592,843 - 3,596,010 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

C6H16orf90
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	37,754,210 - 37,756,174 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	37,754,234 - 37,756,173 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	39,082,535 - 39,084,131 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha

CUNH16orf90
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	105,894,071 - 105,898,785 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	810,306 - 815,052 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	810,164 - 815,392 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C3H16orf90
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	38,753,455 - 38,761,881 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	40,121,596 - 40,123,163 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C5H16orf90
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	3,190,148 - 3,192,091 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	27,628,417 - 27,630,359 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH16orf90
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624824	1,289,352 - 1,295,555 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C9H16orf90
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	17,936,541 - 17,939,435 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C10h16orf90
102 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	104
Count of miRNA genes:	81
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000009521, ENSRNOT00000068577
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

BF406341

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	11,621,456 - 11,621,591 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	11,880,538 - 11,880,672	NCBI	Rnor6.0
Rnor_5.0	10	10,636,800 - 10,636,934	UniSTS	Rnor5.0
RGSC_v3.4	10	11,889,003 - 11,889,137	UniSTS	RGSC3.4
Celera	10	10,578,071 - 10,578,205	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	87	59	6	351	187	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001077638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_340757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068577 ⟹ ENSRNOP00000063329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	12,126,200 - 12,128,109 (+)	Ensembl
mRatBN7.2 Ensembl	10	11,619,875 - 11,621,740 (+)	Ensembl
Rnor_6.0 Ensembl	10	11,879,418 - 11,880,473 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075890 ⟹ ENSRNOP00000068084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	11,618,887 - 11,623,735 (+)	Ensembl
Rnor_6.0 Ensembl	10	11,877,979 - 11,882,926 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076382 ⟹ ENSRNOP00000068299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	11,618,873 - 11,629,910 (+)	Ensembl
Rnor_6.0 Ensembl	10	11,878,859 - 11,891,099 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076532 ⟹ ENSRNOP00000068034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	12,125,212 - 12,128,109 (+)	Ensembl
mRatBN7.2 Ensembl	10	11,618,887 - 11,621,740 (+)	Ensembl
Rnor_6.0 Ensembl	10	11,877,903 - 11,880,819 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116734 ⟹ ENSRNOP00000078112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	12,125,315 - 12,128,109 (+)	Ensembl
mRatBN7.2 Ensembl	10	11,618,348 - 11,621,740 (+)	Ensembl

RefSeq Acc Id:

XM_006245836 ⟹ XP_006245898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,126,151 - 12,128,110 (+)	NCBI
mRatBN7.2	10	11,619,692 - 11,621,741 (+)	NCBI
Rnor_6.0	10	11,878,928 - 11,880,822 (+)	NCBI
Rnor_5.0	10	10,634,202 - 10,647,406 (+)	NCBI

Sequence:

show sequence

CACTCCTCCCCCACCATACTGGCCCTCCATGGAAGCCTTGGTCTGTGCATTCTCTGAGCTTCGA
ATAAGAGAAGATGCAGTGAGCTGGGCCCCAGGACGCCCCAGCCACCCTGACACACCACCTAACA
TCTATGAGGGAGGGTTGGGGGCCCAGCAGCAGCAGGGCCCCAGTGCCCAGGGAAGCAAGCCCAA
GAACTTCCGATTGCGACACCTCCGGAGCCTGGCTCTCTACCTGCCAGGCCACATGCAGCCTGCC
GGCCAATGCGGAAGCCACTGGCTAGGCCGGCTCATGGCTGGGGGCAGCCTGACACGGCCTGAAG
GCTCGCCCTGGCCCCTGGCCCTGCCACAGGGGACCCTGGGTCCAGGTAACGGCCATTGCTCAGC
CCTCCTGGAAGCCCGCCTGCCCAGGGACAGCCTGGGAAACACAGCTTCCAGTTCCAGCATGGAC
CCAGCCAAGGGTGTCCCCTCCCAGTCTGGTCCCCCCGAGGGCTTGGGACTCAGGCCCAAGAGGT
CCTGGAGAGCCTTGGAGGAGACCATGTGTCCCTTGTGCAAGAGAACCCGCTCTGGGGCCTTGGA
GAGGACATAGGAGGCAAAGGGCCAGGGCTGGGGAACAGTAGGGGAAGGATGGCCGAGGAGGAGG
AGGCCAGGGTTACTGAGGAAGGGTTCAGTCCCAGAGGCAGCCCTCCCCACTGAGATGGCCCCCA
GAGTTGCCTAGCACCAGACCTGGGCTGGTCTGGGGAAAGCATGAGGAGGGAGGGAGGGAGGAAG
AAGATCCATGAGAGGGACAGAAGAAATGGAAGCATGTCAGTGCCCTTGCAGCCTGCCCAAACTC
CGGTCAGCCACTTGTACCTGGGAGGTCAGGCCGAGCAGAGAATCGGGTTCCTGAGAGGCCAGGG
AGTCCTCAGGTCTAATCTCAGTAAAAGCCAAGGCCTGCA

hide sequence

RefSeq Acc Id:

XM_006245837 ⟹ XP_006245899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,125,746 - 12,128,110 (+)	NCBI
mRatBN7.2	10	11,619,376 - 11,621,741 (+)	NCBI
Rnor_6.0	10	11,878,511 - 11,880,822 (+)	NCBI
Rnor_5.0	10	10,634,202 - 10,647,406 (+)	NCBI

Sequence:

show sequence

CGTATTGCTTAACAACCAATGAGAAAATGGATAATTAGATAGGTGTCACCCAGAACCATCTTCT
CAGCATGATTCAGATCTCTCCAGATGCAGTGAGCTGGGCCCCAGGACGCCCCAGCCACCCTGAC
ACACCACCTAACATCTATGAGGGAGGGTTGGGGGCCCAGCAGCAGCAGGGCCCCAGTGCCCAGG
GAAGCAAGCCCAAGAACTTCCGATTGCGACACCTCCGGAGCCTGGCTCTCTACCTGCCAGGCCA
CATGCAGCCTGCCGGCCAATGCGGAAGCCACTGGCTAGGCCGGCTCATGGCTGGGGGCAGCCTG
ACACGGCCTGAAGGCTCGCCCTGGCCCCTGGCCCTGCCACAGGGGACCCTGGGTCCAGGTAACG
GCCATTGCTCAGCCCTCCTGGAAGCCCGCCTGCCCAGGGACAGCCTGGGAAACACAGCTTCCAG
TTCCAGCATGGACCCAGCCAAGGGTGTCCCCTCCCAGTCTGGTCCCCCCGAGGGCTTGGGACTC
AGGCCCAAGAGGTCCTGGAGAGCCTTGGAGGAGACCATGTGTCCCTTGTGCAAGAGAACCCGCT
CTGGGGCCTTGGAGAGGACATAGGAGGCAAAGGGCCAGGGCTGGGGAACAGTAGGGGAAGGATG
GCCGAGGAGGAGGAGGCCAGGGTTACTGAGGAAGGGTTCAGTCCCAGAGGCAGCCCTCCCCACT
GAGATGGCCCCCAGAGTTGCCTAGCACCAGACCTGGGCTGGTCTGGGGAAAGCATGAGGAGGGA
GGGAGGGAGGAAGAAGATCCATGAGAGGGACAGAAGAAATGGAAGCATGTCAGTGCCCTTGCAG
CCTGCCCAAACTCCGGTCAGCCACTTGTACCTGGGAGGTCAGGCCGAGCAGAGAATCGGGTTCC
TGAGAGGCCAGGGAGTCCTCAGGTCTAATCTCAGTAAAAGCCAAGGCCTGCA

hide sequence

RefSeq Acc Id:

XM_063270078 ⟹ XP_063126148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,125,235 - 12,128,110 (+)	NCBI

RefSeq Acc Id:

XM_340757 ⟹ XP_340758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,125,280 - 12,128,110 (+)	NCBI
mRatBN7.2	10	11,618,867 - 11,621,741 (+)	NCBI
Rnor_6.0	10	11,878,043 - 11,880,822 (+)	NCBI
Rnor_5.0	10	10,634,202 - 10,647,406 (+)	NCBI
RGSC_v3.4	10	11,886,572 - 11,889,287 (+)	RGD

Sequence:

show sequence

TACGAGTCGAGGACAACCGCGACAAGGAAAGGCTGGGGAGAGGAGAGATGAGCTGAGCCAAGAA
GGGTGGGCGAAGAGGAAGGAAAATGGATGCAGTGAGCTGGGCCCCAGGACGCCCCAGCCACCCT
GACACACCACCTAACATCTATGAGGGAGGGTTGGGGGCCCAGCAGCAGCAGGGCCCCAGTGCCC
AGGGAAGCAAGCCCAAGAACTTCCGATTGCGACACCTCCGGAGCCTGGCTCTCTACCTGCCAGG
CCACATGCAGCCTGCCGGCCAATGCGGAAGCCACTGGCTAGGCCGGCTCATGGCTGGGGGCAGC
CTGACACGGCCTGAAGGCTCGCCCTGGCCCCTGGCCCTGCCACAGGGGACCCTGGGTCCAGGTA
ACGGCCATTGCTCAGCCCTCCTGGAAGCCCGCCTGCCCAGGGACAGCCTGGGAAACACAGCTTC
CAGTTCCAGCATGGACCCAGCCAAGGGTGTCCCCTCCCAGTCTGGTCCCCCCGAGGGCTTGGGA
CTCAGGCCCAAGAGGTCCTGGAGAGCCTTGGAGGAGACCATGTGTCCCTTGTGCAAGAGAACCC
GCTCTGGGGCCTTGGAGAGGACATAGGAGGCAAAGGGCCAGGGCTGGGGAACAGTAGGGGAAGG
ATGGCCGAGGAGGAGGAGGCCAGGGTTACTGAGGAAGGGTTCAGTCCCAGAGGCAGCCCTCCCC
ACTGAGATGGCCCCCAGAGTTGCCTAGCACCAGACCTGGGCTGGTCTGGGGAAAGCATGAGGAG
GGAGGGAGGGAGGAAGAAGATCCATGAGAGGGACAGAAGAAATGGAAGCATGTCAGTGCCCTTG
CAGCCTGCCCAAACTCCGGTCAGCCACTTGTACCTGGGAGGTCAGGCCGAGCAGAGAATCGGGT
TCCTGAGAGGCCAGGGAGTCCTCAGGTCTAATCTCAGTAAAAGCCAAGGCCTGCA

hide sequence

RefSeq Acc Id:

XR_010055521

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,126,151 - 12,138,441 (+)	NCBI

RefSeq Acc Id:

XR_010055522

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,126,151 - 12,138,441 (+)	NCBI

RefSeq Acc Id:

XR_010055523

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,125,746 - 12,138,441 (+)	NCBI

RefSeq Acc Id:

XR_010055524

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	12,125,280 - 12,138,441 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417148	(Get FASTA)	NCBI Sequence Viewer
	NP_001417149	(Get FASTA)	NCBI Sequence Viewer
	NP_001417150	(Get FASTA)	NCBI Sequence Viewer
	XP_006245898	(Get FASTA)	NCBI Sequence Viewer
	XP_006245899	(Get FASTA)	NCBI Sequence Viewer
	XP_063126148	(Get FASTA)	NCBI Sequence Viewer
	XP_340758	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063329
	ENSRNOP00000063329.3
	ENSRNOP00000068034
	ENSRNOP00000068034.1
	ENSRNOP00000078112
	ENSRNOP00000078112.1

RefSeq Acc Id:	XP_340758 ⟸ XM_340757
- Peptide Label:	isoform X3
- UniProtKB:	A0A096MJ85 (UniProtKB/TrEMBL), F1M3A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAVSWAPGRPSHPDTPPNIYEGGLGAQQQQGPSAQGSKPKNFRLRHLRSLALYLPGHMQPAGQ CGSHWLGRLMAGGSLTRPEGSPWPLALPQGTLGPGNGHCSALLEARLPRDSLGNTASSSSMDPA KGVPSQSGPPEGLGLRPKRSWRALEETMCPLCKRTRSGALERT hide sequence

RefSeq Acc Id:	XP_006245899 ⟸ XM_006245837
- Peptide Label:	isoform X2
- Sequence:	show sequence MIQISPDAVSWAPGRPSHPDTPPNIYEGGLGAQQQQGPSAQGSKPKNFRLRHLRSLALYLPGHM QPAGQCGSHWLGRLMAGGSLTRPEGSPWPLALPQGTLGPGNGHCSALLEARLPRDSLGNTASSS SMDPAKGVPSQSGPPEGLGLRPKRSWRALEETMCPLCKRTRSGALERT hide sequence

RefSeq Acc Id:	XP_006245898 ⟸ XM_006245836
- Peptide Label:	isoform X1
- Sequence:	show sequence MEALVCAFSELRIREDAVSWAPGRPSHPDTPPNIYEGGLGAQQQQGPSAQGSKPKNFRLRHLRS LALYLPGHMQPAGQCGSHWLGRLMAGGSLTRPEGSPWPLALPQGTLGPGNGHCSALLEARLPRD SLGNTASSSSMDPAKGVPSQSGPPEGLGLRPKRSWRALEETMCPLCKRTRSGALERT hide sequence

Ensembl Acc Id:

ENSRNOP00000068084 ⟸ ENSRNOT00000075890

Ensembl Acc Id:

ENSRNOP00000063329 ⟸ ENSRNOT00000068577

Ensembl Acc Id:

ENSRNOP00000068299 ⟸ ENSRNOT00000076382

Ensembl Acc Id:

ENSRNOP00000068034 ⟸ ENSRNOT00000076532

Ensembl Acc Id:

ENSRNOP00000078112 ⟸ ENSRNOT00000116734

RefSeq Acc Id:	XP_063126148 ⟸ XM_063270078
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A096MJ85-F1-model_v2	AlphaFold	A0A096MJ85	1-171	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696985

Promoter ID:

EPDNEW_R7508

Type:

multiple initiation site

Name:

RGD1561796_1

Description:

RGD1561796

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7509

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	11,877,953 - 11,878,013	EPDNEW

RGD ID:

13696986

Promoter ID:

EPDNEW_R7509

Type:

initiation region

Name:

RGD1561796_2

Description:

RGD1561796

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7508

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	11,878,914 - 11,878,974	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561796	AgrOrtholog
BioCyc Gene	G2FUF-25994	BioCyc
Ensembl Genes	ENSRNOG00000007268	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068577	ENTREZGENE
	ENSRNOT00000068577.4	UniProtKB/TrEMBL
	ENSRNOT00000076532	ENTREZGENE
	ENSRNOT00000076532.4	UniProtKB/TrEMBL
	ENSRNOT00000116734	ENTREZGENE
	ENSRNOT00000116734.2	UniProtKB/TrEMBL
InterPro	DUF4644	UniProtKB/TrEMBL
NCBI Gene	360483	ENTREZGENE
PANTHER	PTHR37334	UniProtKB/TrEMBL
	RGD1561796	UniProtKB/TrEMBL
Pfam	DUF4644	UniProtKB/TrEMBL
PhenoGen	C10h16orf90	PhenoGen
RatGTEx	ENSRNOG00000007268	RatGTEx
UniProt	A0A096MJ85	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y1Y7	ENTREZGENE, UniProtKB/TrEMBL
	F1M3A2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C10h16orf90	similar to human chromosome 16 open reading frame 90	RGD1561796	RGD1561796	Symbol and Name Changed	1299863	APPROVED
2021-03-09	RGD1561796	RGD1561796	LOC103690212	uncharacterized LOC103690212	Data merged from RGD:9350506	737654	PROVISIONAL
2014-08-25	LOC103690212	uncharacterized LOC103690212			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1561796	RGD1561796	RGD1561796_predicted	RGD1561796 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561796_predicted	RGD1561796 (predicted)	LOC360483	hypothetical LOC360483	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360483	hypothetical LOC360483			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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