Entpd8 (ectonucleoside triphosphate diphosphohydrolase 8) - Rat Genome Database

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Gene: Entpd8 (ectonucleoside triphosphate diphosphohydrolase 8) Rattus norvegicus
Analyze
Symbol: Entpd8
Name: ectonucleoside triphosphate diphosphohydrolase 8
RGD ID: 1561793
Description: Enables apyrase activity. Involved in ribonucleoside diphosphate catabolic process and ribonucleoside triphosphate catabolic process. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human ENTPD8 (ectonucleoside triphosphate diphosphohydrolase 8); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E-NTPDase 8; NTPDase 8; NTPDase8
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,283,392 - 28,295,686 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,285,777 - 28,293,686 (+)EnsemblGRCr8
mRatBN7.237,885,277 - 7,895,517 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,889,909 - 7,895,296 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx310,995,425 - 11,000,305 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,581,652 - 19,586,533 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,771,499 - 17,776,379 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,286,363 - 2,299,720 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,288,667 - 2,302,782 (+)Ensemblrn6Rnor6.0
Rnor_5.032,267,798 - 2,281,078 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,229,747 - 5,258,064 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,718,457 - 2,723,116 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA,ISO)
plasma membrane  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Cloning, purification, and identification of the liver canalicular ecto-ATPase as NTPDase8. Fausther M, etal., Am J Physiol Gastrointest Liver Physiol. 2007 Mar;292(3):G785-95. doi: 10.1152/ajpgi.00293.2006. Epub 2006 Nov 9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15122917   PMID:16752921   PMID:18404504  


Genomics

Comparative Map Data
Entpd8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,283,392 - 28,295,686 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,285,777 - 28,293,686 (+)EnsemblGRCr8
mRatBN7.237,885,277 - 7,895,517 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,889,909 - 7,895,296 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx310,995,425 - 11,000,305 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,581,652 - 19,586,533 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,771,499 - 17,776,379 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,286,363 - 2,299,720 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,288,667 - 2,302,782 (+)Ensemblrn6Rnor6.0
Rnor_5.032,267,798 - 2,281,078 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,229,747 - 5,258,064 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,718,457 - 2,723,116 (+)NCBICelera
Cytogenetic Map3p13NCBI
ENTPD8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,434,364 - 137,441,357 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,434,362 - 137,441,881 (-)Ensemblhg38GRCh38
GRCh379140,328,816 - 140,335,809 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,448,637 - 139,455,722 (-)NCBIBuild 36Build 36hg18NCBI36
Celera9110,854,994 - 110,862,292 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,793,335 - 109,797,279 (-)NCBIHuRef
CHM1_19140,477,526 - 140,484,325 (-)NCBICHM1_1
T2T-CHM13v2.09149,684,986 - 149,691,908 (-)NCBIT2T-CHM13v2.0
Entpd8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,969,308 - 24,975,731 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,970,316 - 24,975,728 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38225,079,296 - 25,085,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,080,304 - 25,085,716 (+)Ensemblmm10GRCm38
MGSCv37224,935,843 - 24,941,239 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36224,902,331 - 24,907,735 (+)NCBIMGSCv36mm8
Celera224,807,501 - 24,812,897 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.97NCBI
Entpd8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,353,229 - 5,356,019 (-)Ensembl
ChiLan1.0NW_0049555135,352,843 - 5,357,671 (-)NCBIChiLan1.0ChiLan1.0
ENTPD8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,951,005 - 1,955,579 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,953,502 - 1,957,912 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,503,511 - 108,511,822 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,468,154 - 137,472,092 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,468,154 - 137,472,092 (-)EnsemblpanPan2panpan1.1
ENTPD8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,301,499 - 48,306,210 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,303,206 - 48,305,992 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha947,488,660 - 47,493,285 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0949,163,572 - 49,168,197 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,165,208 - 49,168,711 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,939,941 - 47,944,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,238,919 - 48,243,543 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,285,415 - 48,290,040 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Entpd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,742,160 - 202,760,164 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669615,375 - 634,309 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936669629,400 - 632,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ENTPD8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21314,007,959 - 314,012,816 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ENTPD8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112752,258 - 758,148 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12752,774 - 757,614 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660584,588,947 - 4,594,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Entpd8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760599,156 - 603,520 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624760597,580 - 603,523 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Entpd8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1512,099,047 - 12,105,939 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Entpd8
102 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:113
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000012289
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
16 8 16 53 87 86 55 27 55 6 211 68 5 28 64 70 31

Sequence


Ensembl Acc Id: ENSRNOT00000012289   ⟹   ENSRNOP00000012289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,285,777 - 28,293,686 (+)Ensembl
mRatBN7.2 Ensembl37,889,909 - 7,895,296 (+)Ensembl
Rnor_6.0 Ensembl32,288,667 - 2,302,782 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109534   ⟹   ENSRNOP00000095185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,285,777 - 28,293,686 (+)Ensembl
mRatBN7.2 Ensembl37,889,909 - 7,895,296 (+)Ensembl
RefSeq Acc Id: NM_001033565   ⟹   NP_001028737
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,288,080 - 28,293,459 (+)NCBI
mRatBN7.237,889,909 - 7,895,289 (+)NCBI
Rnor_6.032,290,304 - 2,299,492 (+)NCBI
Rnor_5.032,267,798 - 2,281,078 (+)NCBI
RGSC_v3.435,229,747 - 5,258,064 (+)RGD
Celera32,718,457 - 2,723,116 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233639   ⟹   XP_006233701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,397 - 28,295,686 (+)NCBI
mRatBN7.237,885,280 - 7,895,517 (+)NCBI
Rnor_6.032,288,898 - 2,299,720 (+)NCBI
Rnor_5.032,267,798 - 2,281,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105775   ⟹   XP_038961703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,397 - 28,295,686 (+)NCBI
mRatBN7.237,887,276 - 7,895,517 (+)NCBI
RefSeq Acc Id: XM_063284479   ⟹   XP_063140549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,396 - 28,295,686 (+)NCBI
RefSeq Acc Id: XM_063284480   ⟹   XP_063140550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,401 - 28,295,686 (+)NCBI
RefSeq Acc Id: XM_063284481   ⟹   XP_063140551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,400 - 28,295,686 (+)NCBI
RefSeq Acc Id: XM_063284482   ⟹   XP_063140552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,400 - 28,295,686 (+)NCBI
RefSeq Acc Id: XM_063284483   ⟹   XP_063140553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,392 - 28,295,686 (+)NCBI
RefSeq Acc Id: XM_063284484   ⟹   XP_063140554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,283,396 - 28,295,686 (+)NCBI
RefSeq Acc Id: NP_001028737   ⟸   NM_001033565
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006233701   ⟸   XM_006233639
- Peptide Label: isoform X1
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012289   ⟸   ENSRNOT00000012289
RefSeq Acc Id: XP_038961703   ⟸   XM_039105775
- Peptide Label: isoform X1
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000095185   ⟸   ENSRNOT00000109534
RefSeq Acc Id: XP_063140553   ⟸   XM_063284483
- Peptide Label: isoform X3
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063140554   ⟸   XM_063284484
- Peptide Label: isoform X4
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063140549   ⟸   XM_063284479
- Peptide Label: isoform X1
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063140551   ⟸   XM_063284481
- Peptide Label: isoform X2
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063140552   ⟸   XM_063284482
- Peptide Label: isoform X2
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063140550   ⟸   XM_063284480
- Peptide Label: isoform X2
- UniProtKB: Q5DRK1 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5DRK1-F1-model_v2 AlphaFold Q5DRK1 1-494 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561793 AgrOrtholog
BioCyc Gene G2FUF-50487 BioCyc
Ensembl Genes ENSRNOG00000009239 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012289 ENTREZGENE
Gene3D-CATH 3.30.420.40 UniProtKB/Swiss-Prot
  Exopolyphosphatase. Domain 2 UniProtKB/Swiss-Prot
InterPro GDA1_CD39_NTPase UniProtKB/Swiss-Prot
KEGG Report rno:613267 UniProtKB/Swiss-Prot
NCBI Gene 613267 ENTREZGENE
PANTHER ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 8 UniProtKB/Swiss-Prot
  PTHR11782 UniProtKB/Swiss-Prot
Pfam GDA1_CD39 UniProtKB/Swiss-Prot
PhenoGen Entpd8 PhenoGen
PROSITE GDA1_CD39_NTPASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009239 RatGTEx
UniProt A0A8I6AN09_RAT UniProtKB/TrEMBL
  A6JT07_RAT UniProtKB/TrEMBL
  A6JT08_RAT UniProtKB/TrEMBL
  ENTP8_RAT UniProtKB/Swiss-Prot
  F1LPV1_RAT UniProtKB/TrEMBL
  Q5DRK1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-02-09 Entpd8  ectonucleoside triphosphate diphosphohydrolase 8      Symbol and Name status set to provisional 70820 PROVISIONAL