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Gene: Tmem200c (transmembrane protein 200C) Rattus norvegicus

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Symbol:

Tmem200c

Name:

transmembrane protein 200C

RGD ID:

1561734

Description:

Predicted to be located in membrane. Orthologous to human TMEM200C (transmembrane protein 200C); INTERACTS WITH 6-propyl-2-thiouracil; alpha-Zearalanol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC501201; RGD1561734; similar to KIAA1913; transmembrane protein TTMA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM200C (transmembrane protein 200C)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Tmem200c (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem200c (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM200C (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM200C (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem200c (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM200C (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM200C (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem200c (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmem200c (transmembrane protein 200C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MARCKSL1 (MARCKS like 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tmem200c (transmembrane protein 200C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM200C (transmembrane protein 200C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem200ca (transmembrane protein 200C, genome duplicate a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12502	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	R05D7.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tmem200c	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	116,252,780 - 116,258,618 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	116,205,796 - 116,260,831 (+)	Ensembl				GRCr8
mRatBN7.2	9	108,806,063 - 108,811,901 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	108,805,787 - 108,812,226 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	117,195,890 - 117,201,708 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	122,320,235 - 122,326,065 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	120,661,797 - 120,667,615 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	117,044,533 - 117,050,371 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	117,044,533 - 117,050,371 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	116,518,447 - 116,524,285 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	107,971,741 - 107,974,491 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	105,962,144 - 105,967,982 (+)	NCBI		Celera
Cytogenetic Map	9	q38	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

3-isobutyl-1-methyl-7H-xanthine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

fenvalerate (EXP)

glycidol (EXP)

indometacin (ISO)

iron dichloride (ISO)

lipopolysaccharide (ISO)

methylmercury chloride (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Tmem200c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	116,252,780 - 116,258,618 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	116,205,796 - 116,260,831 (+)	Ensembl				GRCr8
mRatBN7.2	9	108,806,063 - 108,811,901 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	108,805,787 - 108,812,226 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	117,195,890 - 117,201,708 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	122,320,235 - 122,326,065 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	120,661,797 - 120,667,615 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	117,044,533 - 117,050,371 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	117,044,533 - 117,050,371 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	116,518,447 - 116,524,285 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	107,971,741 - 107,974,491 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	105,962,144 - 105,967,982 (+)	NCBI		Celera
Cytogenetic Map	9	q38	NCBI

TMEM200C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	5,882,072 - 5,896,174 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	5,882,072 - 5,896,084 (-)	Ensembl			hg38	GRCh38
GRCh37	18	5,882,071 - 5,896,173 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	5,880,184 - 5,882,103 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	18	5,775,689 - 5,778,074 (-)	NCBI		Celera
Cytogenetic Map	18	p11.31	NCBI
HuRef	18	5,853,847 - 5,855,920 (-)	NCBI		HuRef
CHM1_1	18	5,889,586 - 5,891,505 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	6,042,188 - 6,056,282 (-)	NCBI		T2T-CHM13v2.0

Tmem200c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	69,144,084 - 69,150,133 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	69,133,618 - 69,150,134 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	68,837,136 - 68,843,138 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	68,826,623 - 68,843,139 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	69,175,963 - 69,191,724 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	68,742,046 - 68,747,247 (+)	NCBI		MGSCv36	mm8
MGSCv36	17	67,979,077 - 67,984,278 (+)	NCBI		MGSCv36	mm8
Celera	17	73,126,432 - 73,142,171 (+)	NCBI		Celera
Cytogenetic Map	17	E1.3	NCBI
cM Map	17	39.36	NCBI

Tmem200c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955402	5,235,381 - 5,248,845 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM200C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	32,563,957 - 32,577,055 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	18,256,550 - 18,262,302 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	8,396,671 - 8,410,608 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	10,715,459 - 10,721,310 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	10,718,658 - 10,720,521 (+)	Ensembl			panPan2	panpan1.1

TMEM200C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	7	71,697,973 - 71,704,128 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	72,290,033 - 72,303,410 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	72,298,077 - 72,300,083 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	72,000,780 - 72,006,933 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	72,023,889 - 72,037,275 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	72,316,058 - 72,329,456 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmem200c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	68,543,806 - 68,574,597 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936779	643,503 - 645,434 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936779	640,180 - 648,031 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM200C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	101,214,902 - 101,216,782 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	101,211,852 - 101,217,574 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM200C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	64,961,319 - 64,966,946 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	64,962,104 - 64,963,969 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	39,846,886 - 39,859,517 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem200c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	15,512,843 - 15,514,623 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624770	15,512,059 - 15,515,584 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmem200c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	178,453,958 - 178,459,916 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	334
Count of miRNA genes:	179
Interacting mature miRNAs:	213
Transcripts:	ENSRNOT00000072916
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	85262459	118999486	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	86720043	121768150	Rat

Markers in Region

RH142905

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	108,811,065 - 108,811,200 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	117,049,536 - 117,049,670	NCBI	Rnor6.0
Rnor_5.0	9	116,523,450 - 116,523,584	UniSTS	Rnor5.0
RGSC_v3.4	9	107,973,656 - 107,973,790	UniSTS	RGSC3.4
Celera	9	105,967,147 - 105,967,281	UniSTS
Cytogenetic Map	9	q38	UniSTS

RH143408

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	108,809,531 - 108,809,690 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	117,048,002 - 117,048,160	NCBI	Rnor6.0
Rnor_5.0	9	116,521,916 - 116,522,074	UniSTS	Rnor5.0
RGSC_v3.4	9	107,972,122 - 107,972,280	UniSTS	RGSC3.4
Celera	9	105,965,613 - 105,965,771	UniSTS
Cytogenetic Map	9	q38	UniSTS

RH137665

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	108,811,669 - 108,811,819 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	117,050,140 - 117,050,289	NCBI	Rnor6.0
Rnor_5.0	9	116,524,054 - 116,524,203	UniSTS	Rnor5.0
RGSC_v3.4	9	107,974,260 - 107,974,409	UniSTS	RGSC3.4
Celera	9	105,967,751 - 105,967,900	UniSTS
Cytogenetic Map	9	q38	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	12	44	161	55	54	23	54	23	6	237	131	11	140	64	82	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001251926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072916 ⟹ ENSRNOP00000064607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	116,205,796 - 116,258,640 (+)	Ensembl
mRatBN7.2 Ensembl	9	108,805,787 - 108,812,226 (+)	Ensembl
Rnor_6.0 Ensembl	9	117,044,533 - 117,050,371 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123178 ⟹ ENSRNOP00000101452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	116,207,942 - 116,258,640 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150611 ⟹ ENSRNOP00000111081

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	116,252,635 - 116,260,831 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172408 ⟹ ENSRNOP00000108997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	116,221,042 - 116,258,640 (+)	Ensembl

RefSeq Acc Id:

NM_001251926 ⟹ NP_001238855

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	116,252,780 - 116,258,618 (+)	NCBI
mRatBN7.2	9	108,806,063 - 108,811,901 (+)	NCBI
Rnor_6.0	9	117,044,533 - 117,050,371 (+)	NCBI
Rnor_5.0	9	116,518,447 - 116,524,285 (+)	NCBI
Celera	9	105,962,144 - 105,967,982 (+)	NCBI

Sequence:

show sequence

ACCGTGGCAGACGAGGAGGTGCGCCCGAGGGAAGAAGGGCTCCAGGCAGCGCGCGGGTAGCAGA
GGACCTGACACTTCTTGGGAACTCTTGGAAATGGCTCCCGCCACCAAGCCCGAGGGGACTGCGA
GCCCCTGGCGCAGGTTTGTCCCCGCCGGACTGTCCAGCCGTTCTCGCGCCCGGGGCTCCGGGGC
GCTGTCCCTGCGCTCCGCCGTCGGCTCGGGCTGAAAAGTTTCTCCATGGTTCTTTGTGTCTCCC
GAGCTGCCCCGGTCTCCCTGGGAGGAGGTGACCAAGCAGCTAGTGGGCAGCTGGCGCTCCCCCC
ACACAAGCTTCAGCTGCAGCCTGCGGGCTGGCCTTCCATTCCACCAGTTCACCATGATCGCCAC
TGGTGGCCTACTGAGGATATCCGCGAGAAAGCAGGATCCTCTCCGGCCCCCTAGCCAAGTCCCT
AAGCGCAAGAGGAAAGCCAAGAAGAGGCGTAAAAACGACGTGGTAGTGGTGAAAGGCAAGCTGA
AGCTGTGCTCCATTTCGGGGCTCATTGCCCTTTGCGGGATCCTAGTGTTGTTGGTGGGCATAGC
CATGGCTGTGGTGGGCTACTGGCCAAAAGCCAACGCAGCCAACAGAGGTGGGAGCAAGCAGTTC
CTGCCTGTGGGCAGTATCCATCGCACTGGGGCGGCCAGCAACAGCAGCAGTGGCAACAAAAACC
CAGCCAAGAACCACTCTGGGACCCCAGGGGGTGTCAACTCCAGTTCTGTGGGCGGGCCCAGGAG
TTCGCCTCCTGCAAGAACTGCTGCCACCTCCTCCTCTTCTTCTTCTTCCTCTTCCTCCTCCTCC
ACGTCTGTGGGCTTCTTCTTCCGAATCTTCTCAGGCTACTTGCACTCAGACAAGCTAAAGGTCT
TTGGACCCCTCATCATGGGTATAGGCATCTTCCTCTTCATTTGCGCCAACGCGGTGCTCCATGA
GAACAGGGACAAGAAGACCAAGATCATCAACCTGCGGGACCTCTATTCCACTGTCATCGACGTG
CACAGCCTCCGCGCCAAAGATCTGGCAGCAGCTGCTGCTGCGGCCGCCGCGGCGGCAGCTTCCT
CCTCTGCTGCTGCCCCGGGTTCCGCTCCCCCCGGGGCAGCGCCGCTCAATGGCTTTCTTAACTA
CGTGCAATCCCGAGGCCTGGAGCTGAAGCCAGGCAGCTGCGCCGGCTCTGCGGACGCCTTCGGG
GCTGCTGCAATGCTGGCCAGGGGCTCATGGCCCCACCCCGCTGGACTGGGCGGAGGTGGCAGTG
GGACTCGGGAGGCAGGGTCGCCGCCGGACTTGGCTTCATCTCCGCGCTGTCCGCGGGAGCCCCC
GAGTCTGACCGAGGCCGTGTATAGCATATACCGCGAGCGCTCCAGTGGGGCTGGCCGTCGCCGG
ACCACAGTTGCGGCGGTGGCTGCGGCTACTGCCACTGTCACCGCGGCTGCCAGCGGCGGCAGCA
GCCCGGCGCCCTGCAGCCCAACCGGTAGTTGGGGGCGCCAGAGCACCGCCAGCTCCCTCGTGGG
CTCCTCGCTGAGCGCCTTCGCCCTGTTGCCCTTGCATGGGGACCGGGACAGAGACAGGGACTCG
GAAGGCGCAAGCTGCAGCTGGCACAGGCCTCCCGGGGAACGCGGCTCCCGGGATCTCCCCAGGG
GAGAACTGGACCTAAGCCTGACGGACCTCCGGGGAGCCGAGGGCGGCGCGCGCTGGGCGTCCGG
GGAGCCGGAGGAGCCAGAGGGCGGGACGACAGCATGCACCGCCAGGGGGCAGGGCCGCCGCTTG
CCCAGGACCGGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGACTCCCGGAGTACCGAG
CGCCACCGTCGCCCGAGCCCCCACCTTCCGGGTTCGCAGCGGACCTAGACTCTGGCCCCCCTGG
TACAGTCGCCACGCCCTCGCTCCCTCTGCGCCCTGAGGACTCGCCCGGCGTCCGGCGGGATTCC
CATAGTTCTCAGTCGGATGACCAGTCCAGCAGCAATAAGGGCTACACCCCCCTGAGGGAGGCTG
ACACCTCTGTGGAGTCAGTGGTGGATGTAGTGGCCAGGAAAAGGCTAGACTGTGAGGCGGCCAC
AGATCCCAGTACTGAGCACAGCTCCCCTGAGGGTCCCAGTCCAGAGCCAACTAGGGTAGAGCTT
CATACTGGGCAGAGGCAGTTTACAAACAAGGAGAAACTCTTCCTGATTTCCAGGTCTCACACCC
CAGGAGTAGAAGACCCTGAATTGGAAAACTCTTCCAACTAGGGAGAGCGGGGCAGGGAAAGCAG
ACACGCGTGGGGGGTAGAGTACCACTGGAACCTCTGCATTAAAAGTCCCCACCCTACCCCGACT
CCCCTGTGGACAAGTCCGAGGAAACCATTCAATATCCAAAGAGCTACAGAATGTTATCCTTGAA
TTACGTTCACAAGATTCCTGTAGATAACTCAAGCAATTTTTTTAAAAAAAAACAAACAAGCAAA
GTCGTCTTTTTATGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTATTAAAAGATCAC
AACATAGTTCATTAGAGGAAACTCTCTTAATTTTCTTAGGATCAAAATAATATATTTTTGACAG
TAACTCTGTACTTTATTCCTATTTTTCTTTGCCCCGCCCCCGCCCAACTTCCCGCTCCTGTACT
CTGCTGCTGACTTCGTCCATAGCTGCTTGTAAATGGATGACAAGCTGACTTCCGCCCTCTTGCA
GAGCTTAGAATTGAACTTTCTAGGTGGAGTCAAAGCCCAAAGCATGAGTATTCGGGGAAAGAGG
GCTTCCTTGCCTCACCCCACTGTGCTCTACAGGTGTCCAGAGGATTCTATTTTTTAAAAGGATA
TTTGAATTTTGCTACCAGGGTATGTGAAAAGTGGAGGGCGCCAGCGACCACACTGGATTGTTAT
GTTCTTAAGCTCACAATACCAAGTACACCATGCGTTCCTGAGTATTATCACACTTGTATGGAAA
AATAACATTAATATTTAAAGTCCTTTTTTTAATAAAAAGTTTCCAAACGGTTAAAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001238855	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90918	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064607.1
	ENSRNOP00000101452.1
	ENSRNOP00000108997.1
	ENSRNOP00000111081
	ENSRNOP00000111081.1

RefSeq Acc Id:

NP_001238855 ⟸ NM_001251926

- UniProtKB:

M0R5E3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIATGGLLRISARKQDPLRPPSQVPKRKRKAKKRRKNDVVVVKGKLKLCSISGLIALCGILVLL
VGIAMAVVGYWPKANAANRGGSKQFLPVGSIHRTGAASNSSSGNKNPAKNHSGTPGGVNSSSVG
GPRSSPPARTAATSSSSSSSSSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLFICANA
VLHENRDKKTKIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSAAAPGSAPPGAAPLNG
FLNYVQSRGLELKPGSCAGSADAFGAAAMLARGSWPHPAGLGGGGSGTREAGSPPDLASSPRCP
REPPSLTEAVYSIYRERSSGAGRRRTTVAAVAAATATVTAAASGGSSPAPCSPTGSWGRQSTAS
SLVGSSLSAFALLPLHGDRDRDRDSEGASCSWHRPPGERGSRDLPRGELDLSLTDLRGAEGGAR
WASGEPEEPEGGTTACTARGQGRRLPRTGRYAAWRRRSTSGLPEYRAPPSPEPPPSGFAADLDS
GPPGTVATPSLPLRPEDSPGVRRDSHSSQSDDQSSSNKGYTPLREADTSVESVVDVVARKRLDC
EAATDPSTEHSSPEGPSPEPTRVELHTGQRQFTNKEKLFLISRSHTPGVEDPELENSSN

hide sequence

Ensembl Acc Id:

ENSRNOP00000064607 ⟸ ENSRNOT00000072916

Ensembl Acc Id:

ENSRNOP00000111081 ⟸ ENSRNOT00000150611

Ensembl Acc Id:

ENSRNOP00000108997 ⟸ ENSRNOT00000172408

Ensembl Acc Id:

ENSRNOP00000101452 ⟸ ENSRNOT00000123178

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R5E3-F1-model_v2	AlphaFold	M0R5E3	1-635	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561734	AgrOrtholog
BioCyc Gene	G2FUF-26373	BioCyc
Ensembl Genes	ENSRNOG00000049880	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000072916.3	UniProtKB/TrEMBL
	ENSRNOT00000123178.1	UniProtKB/TrEMBL
	ENSRNOT00000150611	ENTREZGENE
	ENSRNOT00000150611.1	UniProtKB/TrEMBL
	ENSRNOT00000172408.1	UniProtKB/TrEMBL
InterPro	DUF2371_TMEM200	UniProtKB/TrEMBL
KEGG Report	rno:501201	UniProtKB/TrEMBL
NCBI Gene	501201	ENTREZGENE
PANTHER	PTHR31815	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 200C	UniProtKB/TrEMBL
Pfam	DUF2371	UniProtKB/TrEMBL
PhenoGen	Tmem200c	PhenoGen
RatGTEx	ENSRNOG00000049880	RatGTEx
UniProt	M0R5E3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-05-25	Tmem200c	transmembrane protein 200C	RGD1561734	similar to KIAA1913	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1561734	similar to KIAA1913	RGD1561734_predicted	similar to KIAA1913 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561734_predicted	similar to KIAA1913 (predicted)	LOC501201	similar to KIAA1913	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501201	similar to KIAA1913			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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