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Gene: Zfp609 (zinc finger protein 609) Rattus norvegicus

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Symbol:

Zfp609

Name:

zinc finger protein 609

RGD ID:

1561651

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and promoter-specific chromatin binding activity. Predicted to be involved in positive regulation of neuron migration; positive regulation of transcription by RNA polymerase II; and regulation of myoblast proliferation. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human ZNF609 (zinc finger protein 609); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC363412; RGD1561651; similar to zinc finger protein 609; Znf609

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF609 (zinc finger protein 609)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zfp609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf609 (zinc finger protein 609)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF609 (zinc finger protein 609)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp609 (zinc finger protein 609)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf609a (zinc finger protein 609a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sbb	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	sbb	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	znf609b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf609b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	znf609	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	75,109,676 - 75,243,045 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	75,109,676 - 75,213,086 (-)	Ensembl				GRCr8
mRatBN7.2	8	66,214,553 - 66,349,319 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	66,214,555 - 66,317,977 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	71,727,819 - 71,831,392 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	70,000,852 - 70,104,411 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	67,870,012 - 67,973,450 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	71,230,830 - 71,337,746 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	71,230,830 - 71,337,746 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	70,914,209 - 71,016,530 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	69,953,722 - 70,054,701 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	65,605,780 - 65,708,404 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

urinary bladder cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methoxyethanol (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

buta-1,3-diene (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clobetasol (ISO)

coumarin (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

glycidol (EXP)

GSK-J4 (ISO)

hexadecanoic acid (ISO)

lead(0) (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

quercetin (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of neuron migration (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of myoblast proliferation (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA,ISO)

promoter-specific chromatin binding (IEA,ISO)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15632090	PMID:23076336	PMID:28041881	PMID:28344082	PMID:29930739	PMID:31954666

Genomics

Comparative Map Data

Zfp609
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	75,109,676 - 75,243,045 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	75,109,676 - 75,213,086 (-)	Ensembl				GRCr8
mRatBN7.2	8	66,214,553 - 66,349,319 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	66,214,555 - 66,317,977 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	71,727,819 - 71,831,392 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	70,000,852 - 70,104,411 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	67,870,012 - 67,973,450 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	71,230,830 - 71,337,746 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	71,230,830 - 71,337,746 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	70,914,209 - 71,016,530 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	69,953,722 - 70,054,701 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	65,605,780 - 65,708,404 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

ZNF609
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	64,459,578 - 64,686,068 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	64,460,578 - 64,686,068 (+)	Ensembl			hg38	GRCh38
GRCh37	15	64,752,777 - 64,978,267 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	62,578,672 - 62,765,320 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	15	41,669,287 - 41,855,885 (+)	NCBI		Celera
Cytogenetic Map	15	q22.31	NCBI
HuRef	15	41,616,213 - 41,803,891 (+)	NCBI		HuRef
CHM1_1	15	64,910,955 - 65,097,510 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	62,269,004 - 62,495,294 (+)	NCBI		T2T-CHM13v2.0

Zfp609
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	65,598,860 - 65,735,004 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	65,599,673 - 65,734,846 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	65,691,578 - 65,827,564 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	65,692,391 - 65,827,564 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	65,539,390 - 65,675,371 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	65,493,468 - 65,593,333 (-)	NCBI		MGSCv36	mm8
Celera	9	62,922,254 - 63,064,532 (-)	NCBI		Celera
Cytogenetic Map	9	C	NCBI
cM Map	9	35.46	NCBI

Znf609
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	10,808,638 - 10,974,590 (-)	Ensembl
ChiLan1.0	NW_004955450	10,804,761 - 11,002,569 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF609
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	53,711,482 - 53,936,189 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	57,882,941 - 58,105,330 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	43,405,805 - 43,628,201 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	61,699,008 - 61,916,894 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	61,735,706 - 61,912,212 (+)	Ensembl			panPan2	panpan1.1

ZNF609
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	28,913,906 - 29,121,154 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	28,943,975 - 29,116,771 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	28,832,113 - 29,040,431 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	29,088,980 - 29,298,582 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	29,089,364 - 29,297,765 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	29,023,660 - 29,232,768 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	29,085,638 - 29,294,698 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	29,325,463 - 29,534,652 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf609
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	107,050,471 - 107,220,659 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	24,899,154 - 25,063,379 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	24,880,343 - 25,064,895 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF609
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	107,340,542 - 107,583,273 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	107,338,608 - 107,583,347 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	118,171,297 - 118,408,798 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF609
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	19,015,388 - 19,021,849 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	21,000 - 26,870 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf609
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624781	7,906,197 - 8,086,735 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf609
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	60,004,341 - 60,137,991 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp609
834 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	805
Count of miRNA genes:	295
Interacting mature miRNAs:	406
Transcripts:	ENSRNOT00000021554
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	58991697	91341052	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	63404444	108404444	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	58991697	91341052	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	62848139	107848139	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	62848139	107848139	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	62970527	107970527	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	62848139	107848139	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	62848139	107848139	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	62848139	107848139	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	62848139	107848139	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	58991697	91341052	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	62848139	107848139	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	62963099	107963099	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	62982864	107982864	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat

Markers in Region

D8Rat62

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	66,273,899 - 66,274,009 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	71,293,317 - 71,293,426	NCBI	Rnor6.0
Rnor_5.0	8	70,972,101 - 70,972,210	UniSTS	Rnor5.0
RGSC_v3.4	8	70,009,520 - 70,009,629	UniSTS	RGSC3.4
RGSC_v3.4	8	70,009,519 - 70,009,629	RGD	RGSC3.4
Celera	8	65,664,377 - 65,664,486	UniSTS
RGSC_v3.1	8	70,028,574 - 70,028,683	RGD
RH 3.4 Map	8	842.7	RGD
RH 3.4 Map	8	842.7	UniSTS
RH 2.0 Map	8	614.4	RGD
SHRSP x BN Map	8	44.82	RGD
FHH x ACI Map	8	51.31	RGD
Cytogenetic Map	8	q24	UniSTS

D8Rat93

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	75,180,175 - 75,180,291 (+)	Marker Load Pipeline
mRatBN7.2	8	66,285,061 - 66,285,179 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	71,304,479 - 71,304,594	NCBI	Rnor6.0
Rnor_5.0	8	70,983,263 - 70,983,378	UniSTS	Rnor5.0
RGSC_v3.4	8	70,020,681 - 70,020,797	RGD	RGSC3.4
RGSC_v3.4	8	70,020,682 - 70,020,797	UniSTS	RGSC3.4
Celera	8	65,675,539 - 65,675,654	UniSTS
RGSC_v3.1	8	70,039,736 - 70,039,851	RGD
RH 3.4 Map	8	837.1	RGD
RH 3.4 Map	8	837.1	UniSTS
RH 2.0 Map	8	616.9	RGD
SHRSP x BN Map	8	44.82	RGD
FHH x ACI Map	8	51.3399	RGD
Cytogenetic Map	8	q24	UniSTS

40.MHAa92d4.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	66,265,363 - 66,265,541 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	71,284,238 - 71,284,415	NCBI	Rnor6.0
Rnor_5.0	8	70,964,857 - 70,965,034	UniSTS	Rnor5.0
RGSC_v3.4	8	70,000,430 - 70,000,607	UniSTS	RGSC3.4
Celera	8	65,655,846 - 65,656,023	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH127706

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	66,215,519 - 66,215,732 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	71,231,795 - 71,232,007	NCBI	Rnor6.0
Rnor_5.0	8	70,915,174 - 70,915,386	UniSTS	Rnor5.0
RGSC_v3.4	8	69,950,833 - 69,951,045	UniSTS	RGSC3.4
Celera	8	65,606,745 - 65,606,957	UniSTS
RH 3.4 Map	8	840.3	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH133973

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	66,307,542 - 66,307,737 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	71,327,282 - 71,327,476	NCBI	Rnor6.0
Rnor_5.0	8	71,006,066 - 71,006,260	UniSTS	Rnor5.0
Celera	8	65,698,015 - 65,698,209	UniSTS
Cytogenetic Map	8	q24	UniSTS

AI045538

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	66,214,686 - 66,214,878 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	71,230,962 - 71,231,153	NCBI	Rnor6.0
Rnor_5.0	8	70,914,341 - 70,914,532	UniSTS	Rnor5.0
RGSC_v3.4	8	69,950,000 - 69,950,191	UniSTS	RGSC3.4
Celera	8	65,605,912 - 65,606,103	UniSTS
RH 3.4 Map	8	846.8	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
19	12	78	202	91	90	59	136	59	6	436	250	14	185	100	116	31	31	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021554 ⟹ ENSRNOP00000021554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	75,109,676 - 75,213,086 (-)	Ensembl
mRatBN7.2 Ensembl	8	66,214,555 - 66,317,977 (-)	Ensembl
Rnor_6.0 Ensembl	8	71,230,830 - 71,337,746 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126372 ⟹ ENSRNOP00000110216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	75,112,740 - 75,213,086 (-)	Ensembl

RefSeq Acc Id:

NM_001173371 ⟹ NP_001166842

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	75,109,676 - 75,213,086 (-)	NCBI
mRatBN7.2	8	66,214,555 - 66,317,977 (-)	NCBI
Rnor_6.0	8	71,230,830 - 71,337,746 (-)	NCBI
Rnor_5.0	8	70,914,209 - 71,016,530 (-)	NCBI
Celera	8	65,605,780 - 65,708,404 (-)	NCBI

Sequence:

show sequence

GCAATGATGTTGTCCACTGGACATTTTCTGACCAAGGAGGCAGGTCTAAGAACGTAGCTGAAGC
TGAATAAGAAAGCTGGGGGCAAGGAAGAGCCTTGAATCCTGAGGTGGACGTTGACTCTAAGATG
TCCTTGAGCAGTGGAGCCTGCGGAGGGAAAGCAGTGGATGCAAACCCGGTTGAGACATACGACA
GTGGGGATGAATGGGACATTGGAGTAGGGAATCTCATCATCGACCTGGACGCCGATCTGGAAAA
GGACCAGCAGAAACTGGAAATGTCAGGCTCCAAGGAGGTGGGGATACCAGCTCCCAATGCTGTG
GCCACACTACCAGACAACATCAAGTTTGTCACCCCAGTGCCAGGTCCTCAAGGGAAGGAAGGCA
AATCAAAATCCAAAAGGAGTAAGAGTGGCAAAGACACTAGCAAGCCCACTCCAGGGACTTCCTT
GTTCTCTCCAAGTGAGGGAGCAGCAAACAAGAAAGAGGTGCAGGGTCGCTCAGGAGATGGTACC
AGTGCAGGAGGCCTGGTTGCTGCTGTTGCTCCCAAGGGCTCAGAGAAGGCTGCAAAGGCGTCAC
GCAGTGTAGCTGGCTCCAAGAAGGAAAAGGAGAGCAGCTCATCTAAGGGCAAGAAGGAGAGAAG
TGAAGGCGCGGGGACTTGTTCGGAAAAGGATCCTGGGGTGCTCCAGCCAGTTCCCTTGGGAGGA
CGGGGTAGTCAGTATGATGGAAATGCAGGGATGGACACAGGAGGCGTGGAGCCGCTCGGGAGTA
TAGCTAGTGAACCTGGGGCAGCGCTCAATCCTTTGGGAACTAAGCCGGAGCCAGAGGAAGGGGA
GAATGAGTGTCGGCCACTAAAGAAAGTCAAGTCTGAAAAGATGGAGTCCCCGGTCTCCACCCCA
GCGGTGCTGCCGCTGCACCTGTTAGTGCCGGTGGTCAATAACGACATCTCATCTCCCTGTGAGC
AGATCATGGTCCGTACCCGATCAGTTGGAGTCAACACATGCGATGTGGCTCTAGCCACAGAGCC
TGAGTGCTTAGGCCCCTGTGAGCCTGGAACCAGTGTCAACCTTGAAGGCATCGTGTGGCAGGAA
ACAGAAGATGGGATGCTGGTGGTAAATGTGACATGGAGAAACAAGACATATGTAGGCACACTTC
TTGACTGCACAAGACATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCAACCAGTGACTTGGA
AATGCGCAATGGTCGAGGAAGAGGCAAGCGTATGCGTCCTAACAGCAACACGCCGGTCAGCGAG
ACAGCCACAGCCTCTGATAGCAAAGGGACCAGCAGCAACAGCAAGACCCGAGCAGGAGCCAATA
GCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCATCGCCCTCCTGCCAGCAGCACCTCTGA
GGATGTCAAAGCCAGCCCTTCCTCAGCCAATAAGCGGAAAAACAAACCTCTTTCAGACATGGAG
CTGAATTCTAGCTCAGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAG
CCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTATTGTGGACAGAAACTGTCCCTCCCC
AGTCCTGATTGACTGTCCCCACCCAAACTGCAACAAAAAGTACAAGCACATTAATGGGCTTAAG
TACCACCAAGCCCATGCCCACACAGATGATGACAGCAAACCAGAAGCTGATGGAGACAGCGAAT
ATGGAGAAGAGCCCACCCTCCACACAGACCTCAGCAGCTGCAATGGTGCACCTGTCTCACAAAA
AGGATCCTTGTCCCCTGCCCGCTCAGCTACCCCCAAAGTCCGGCTTGTTGAGCCTCACAGCCCT
TCCCCTTCCAGCAAATTCAGCACAAAAGGCCTCTGTAAGAAAAAACTGAGTGGGGAGGGAGACA
CAGACCCTGGAGCCTCATCCAATGATGGGTCTGACGATGGACCCTCAGTAGTGGATGAGACAAG
CAACGACGGCTTCGACTCTGTGGAAAGGAAGTGTGTGGAAAAAGAAAAATGTAAAAAGCCCTCC
AGTTTGAAACCTGAAAAGATTCCATCCAAGAGCTTAAAATCAGCCCGCCCCATTGCCCCTGCCA
TCCCCCCACAACAGATCTACACTTTCCAAACAGCCACCTTCACAGCAGCAAGCCCAGGGTCCTC
CTCAGGCTTGACCACCACAGTGGTCCAAGCAATGCCCAACAGTCCCCAACTCAAGCCCATTCAG
CCCAAGCCCACTGTTATGGGAGAGCCTTTCACAGTCAACCCTGCCCTGACCCCTGCCAAGGACA
AGAAAAAGAAAGACAAAAAAAAGAAGGACTCATCAAAGGAACTTGAAAGTCCTCTGACCCCTGG
GAAGGTATGCCGAGCAGAAGAAGGTAAGAGCCCATTCAGAGAATCGGCAGGAGATGGAGTAAAA
ATGGAGGGCCTTCTGAATGGTTCCTCAGAGTCCCACCAGAGCCGATTAGCTAGTATCAAGGCTG
AAGCTGATAAGATTTACAGTTTTACTGACAATGCCCCCAGCCCTTCAATTGGAGGCAGCAGCCG
CCTAGATAGTACTACCCCAACCCAACCCCTAACTCCCCTCCATGTAGTGACCCAGAATGGAGCT
GAAGCCAGCTCAGTCAAAACCAATAGCCCTGCCTACTCTGACATCTCTGATGCTGGGGAGGATG
GGGAGGGCAAGGTGGACAGTGCCAAGTCCAAGGACCCTGAACAGCTGGTTAAAGAAGGGGCTAA
GAAAACACTTTTCCCCCCTCAGCCGCAGAGCAAAGACTCAGCATATTATCAAGGCTTTGAAAGT
TACTACTCTCCAGGCTATGCACAGTCCAGCCCAGGGGCTCTCCCCTCAAGCAGCCAGGCAGGAA
TGGAGGGCCAGGCCCTAAAGACAAAGAAGGATGAGGAACCTGAGAACATAGAAGGGAAAGTAAA
GAATGATGTCTGTGAGGAAAAGAAGCCTGAGCTGAGCAGTTCTAGTCAGCAGCCCTCTGTCATC
CAGCAACGGCCCAACATGTACATGCAGTCCTTGTACTACAACCAGTATGCCTACGTGCCTCCAT
ATGGCTACAGTGAGCAGAGTTACCACACCCACCTCCTGAGCACCAACACTGCCTATCGGCAGCA
GTATGAAGAACAGCAAAAGCGGCAGGGCGTGGAGCAGCCTCAGCGGGGACTAGACAAGAAGACA
GAGATGGGCCTGAAAGAGCGGGAGGCATCACTCAAGGAAGAGTGGAAGCAAAAGCCGTCAATTC
CACCAACTCTTACCAAGGCTCCCAGCCTGACAGACCTGGTGAAGTCAGGGCCGGGCAAGGCCAA
GGAGCCAGGGACTGATCCTGCCAAGTCTGTCATCATTCCTAAATTAGATGACTCATCAAAACTC
CCCAGCCAGCCCCCTGAAGGCCTTAAAGGAAAGCTGGGTGAGGCCAGCCACCTAGGCAAGGAGG
CGTCTGAGGCTAAGACAGGCACTGAGTGTGGCCGACAGGCAGAGGTGGATCCAATACTCTGGTA
CCGACAGGAGACAGAGCCCCGAATGTGGACATATGTTTATCCTGCCAAATACTCAGACATCAAG
TCAGAGGATGATCGGTGGAAAGAGGAACGGGACCGAAAATTAAAGGAAGACAGGAGCCGGAGTA
AGGACTCTGTTCCCAAGGAAGATGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTACCCACATC
TGAGGAACCCCGCCTTGGAAGCAAGGAGCCCCGACCAGGTGTCCATGTGCCTGTGTCCTCCCCG
CTCACCCAGCACCAGTCCTACATCCCCTACATGCATGGCTACTCTTACAGCCAGTCATATGACC
CCAACCACCCCAGCTACCGGGGGATGCCTGCTGTGATGATGCAGAACTACCCAGGTTCCTATCT
GCCTTCCAGCTATTCTTTCTCCCCGTATGGCAGCAAGGTCTCAGGTGGAGAGGATGCTGACAAG
GCACGCGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCGGAGTCCAAAGCCCTGGATATCTTGC
AGCAACATGCCAGTCACTACAAGAGCAAGTCTCCCACGATAAGTGATAAAAATTCTCAGGAGAG
AGATCGGGGAGGCTGCGGGGTGGTTGGAGGTGGAGGCAGCTGTGGCAGTGTTGGGGGAGCAGGA
GGTGCTGACAGGAGTGCTGACCGGCCCCGCACATCCCCTTCCCAGCGCCTGATGTCCACACACC
ACCACCACCACCACTTGGGCTACTCCTTGCTCCCAGCACAGTACAACCTACCCTATGCCGCAGG
GCTTTCTTCTACAGCCATTGTTGCCAGCCAGCAAGGCTCAACCCCCTCACTCTATCCACCCCCC
CGGAGGTGAGAATGAACACCAAGTGCCCAGATGAAGTCAGCTTCATGGGCCAGACTGGCTCATT
CGAGGTGATGCTGGAGGTGCCATTTTACCATCAGTTACGGTGTTGATCATCCTGTTTGCCATTC
CTACCGTGACTGAAGGCAGACCTTGGCTTTCTCACCTCCACTAGACCCTCCGACCCCCTGACCC
TCCCTCTTCCTCAGGAGCTGGAGAACTGGTACTTTGCAAAAATATTTATTCTCTCAGCCACAGT
TCTGACTGTTGTGGCATCTATGAGATGAAGGCATAGGAGCAACTGAGAAAACAGCCTCATCCCA
GAGAAATGACTGCTCTGTTACCTTAGCCCCTGGTCTACTGCCAGAGCAGCACCACACACACCTG
GGAGGGACCCCAAGCATGGGATAAGGTCTGAAGACAGCACAGCAGCCATACCCCTCACTGTCAT
TACCACCATAAACCAGATTCCACATCTCTTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTG
GAGAAATTAGAATCTCAGGAAAGAAGTAGGGGCTGTTTCCTCTGTAATTACGAAGACAAGGTCT
TCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGAGCCTAACCCGTAAA
GGGTTAAAGTGAGGCTCTTGCCCCACCATTGTCTTGTGCTCCTGTTAGGAGAAGACAGGGATTC
TAGCACCAGCACAGGCTCTCTGGGGATGCTGGGAGGAGCTGGAGCATAAATGGAGTCTGTGAAA
TTGAATCTGCTTCCTCACCAAAATTCCTGCTGCTTTTCATCTCCCAACTCCTTGCCCTTTCTCT
TTCTTTTTTAACCCCTTGGTGCCTTTCCCAGGGGGGGATTCCCCATACTGACCTCACCTCCTCT
ACTGCTTGGCTCCTACAACTCAGGCAGAATAGACTTCTTCCCGGCATGGGTAACCTTGGATCTG
CCACATCACTTTAGAGCAGCAACCAGAAGGCAGGCTGTTCTTGGAGACATTGAGTACCCTTCTC
ATTTAGGGTCACAAATGTGTACATCCCAGTTTCTCTGTCTACAGGTACATGATTTATACAGTTC
ACTCTGTAACTCCATATGTGCCAATATGAAAAGTGTCTTTGTAACACACATTTTTTAGGGGCTG
CTGGCCAAGGAAGGTGATTTGCTCCTTAGACCCTAAAACAGCATATCCAAGCATTGCATGCCCA
AGTCAGAGTGGACTCAGTGAATGAGGCTTTGAGGTGGCAGGCATTTCTCTATTCTCCTGAGCTA
CAAAGTCATGTTAGGGGAAAGTGATGACCTAGTTGTTGGAGTCACTTCTCCGCCTGTGGGATGT
TTTCTAGTTCTCTGCTATTGCAGGGTATCACCCCTTTGTTCCCCTTTCCTCCTGTCTTTGCCCT
TTGTACTGCAAGAGAGAGAGAGAGAAAGATGCACAGATACCAGCTTAGGCTAATGGGGAGCTTG
TAACAAGTGTGTCAAAAATGACAGTTTGAGAGCAGGAAGGTGGGAAAGTGGGGTGGTGGGAGAC
AGTAAGCACAAAGCCCAAGAGAAACCAACTCCCAAGAACCCACAGACCCTCCCTGTCAGGCTCT
GGTAGTTAGCACCTCTGACCTCCAAACCTTCCTGTTTCCAAGTCCTTGTTTTTGTTCAAGTTGG
GTTCTGGGCACTTGGAAAAATCCTTTTGTTTTAGAACCGTTTGCAGGACTCCAAACAGCCTCCT
TACCATCATCGTTCCCTCTGCCCCATGCTGCCCCAGTAAGTAGTAGTTTGGGCAGTGACCCCCT
TTCATTAATGAAAGTAGATGTTGGGGATACCATCTTACCTAACCCGATACCCTTACTAAGAAAG
TGACTGTCAACCCAGTTATGCCCCCAAGACTCCAGTGAGTATAGCCATGCTCCCATCTGTTCCT
GTTTTTTAAATATGGTTGTGTGTTTTGTATGTATCTGTGGCACTGGCTTTCAGTGTGCTTTGTA
CATATTGTAAAGACCAAACCATTGGAGCAATTTTGTTTTTCATTGAGTAGGCATGGCTCACATT
CCTGCCCTTTCCACTTCACCTTATAACTGAGGAGGTGTGTCTGTATTTGCAAGACAGCCTTAGC
TTCTGCAGAGGAAACAGCTTTCTCTCTCACCTCTCCCTTTCCCCTCCATCCGTCTGTCTCTCCC
CTTCCTCTCCCTCTGTCCATCTGTCTCTCTCCCCTCTTCCCCTAGAAAAAGTCAGCTCTTTGTC
CCCTCTGCCCAAGTGCCCTCGAAGAACAGGCGTTGCTCTGAAAGAGGTTAGCAGTAGAAAAACG
ACACTGTTCTCAGCTTGATCCTCCTGGTCCCTGGTCTGAGTCCAGTGTTCTCTCTCTGAAATGG
CACTGCACAGCTGCAGCTGTGGCAGTTCCTGACCAGTGCTTCTATTGGCTGTCCACCTCCACAC
TCCACAGCAGGGAAAGAAAGACGATCTGGTCCAGACCACCAAACCAAGCCTCTCACCAAGCCAC
CCTGGTGCCCGTGCTCTTGGTGTTAATGATCTCAAGAGACCCATGTGAAAGAGAAGCTATAGGA
AGTAGGGGCCTCAACCCTGAGGAAGGGCAGCTACCTTGACAGCTCTGCTGGAGTCACATCTGCG
TCCTTGTTTATGGTGGCCAGCTCACTTCAGCTCCTCCCCATCTTACACTCGTACATGTAGTCCC
CACCTAGCCTACACTCTCCACACATCTCCAAGAAACACAGAAGGGTCAGAGGGTGCCCTCTGAT
GATCATTTCATGCACCTCCTCTCCAGGCTCCAGGGTGGGGTGGGGGGACTTAGTTTGAGGAGTT
AAGACTGCAGAAGGGCTAGAGAATTGGATGTAGGTTTGAGGCCTCATCACTTACCCCATGTACC
CTCTCTATGTACTCTGATGCCCCCCCAAGATTCAGCTGGGCAGCTAGCTGGCCCATAACTCTGG
GCCTTTGTCATTTATTACTAGGGCATCCCAGGAAACCTTCCAGTGATTCCCTGCCATGGGCCCC
TCCCAGGCCTTGTCCCCAGCCCCTCCTGCCCCAGCCCACCCGCTTGCCTTGGTGCTCAGCCCTC
CCGTTGGGAGCAGGTTGGGGCAAGCAGGAGGCCCGGGCTGGAGGGACAGTGTTGCTGTTCATAG
CTTTTGTTCCATTGGCGTTGCTCTGTTGAATTTAATTTCAGTCTTCCTGATTCTTCCCTTCTGT
AAAGTGTACATTACCAAGTTCCTTGTTTTTTTACATATATATATATAAATATATATATATATAT
ATATATACAAACTGTACTCTTTTTGCCTTTGTACATTCAGGCAAGAAGAGAAAATAAATCTTTT
TAAGAGACAATCACAAATCTGTGAGGGCTGCTGATTATTTCTCCTGGAGTTTGCTGCTGAGCTG
CTGCCTCCTCCCCTAGCTGTTCTGTTCCCCCTCAGCTTCCCTGTCTTTTCTCTAGTCCTGCTCC
ATAGCTCCTCAGCTTCACCTTTCCTGGCTGACAGCAAGCTATTGATCCCAGTGTGCCGACTCCC
TGCCCTGTAGCTTCTCTGCCCAGCATCATTTCCCAGCTTGGCCACTGGCTGATCCTGTATCCTG
ACTTCTTTTTTTAACCCTTAGATCTCATTCACCAAAGTGGCTTTGGACCCCTGGGTGTTCTGGG
ACCTGCCTCCCAGAGGCCCTTGGCTTTGGACATTCATTCATCTATGAAACTATGCACCTGGGAG
CTCTCTGCCTGAGATTTTGCACTACTTAAACCTGCCTGGGCATTAGAATGAAAGGTTTTTAGGA
ACAAGTGGGAAATTACCTGCCCCACCCCCACCCAAGCACTCCACCCCACACTACCCCTAGCCTC
AGAGGTCTGCTGGTCCTAGGACTCCTCCTGGACTCCATGGTTACCCTATGACATCAGGGCTAAG
GAACTATTGGTAAGAACTTTTAAGACTCTGAAACAGCCCAGCCAAACCATGTTCAGCCTTTCTT
CTTTCCTTACCTTCTCTCCCCTCTTCCCCCTTTGTTTCTACTTCCTTTTCTTAATTGGCTTTGG
AATTGAAGTATATTTTTAAATTATTTGTTGTATTTATTGAATAAAGTTTTTAATGTCCCTGTTC
TTA

hide sequence

RefSeq Acc Id:

XM_039081824 ⟹ XP_038937752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	75,110,430 - 75,243,045 (-)	NCBI
mRatBN7.2	8	66,214,553 - 66,349,319 (-)	NCBI

RefSeq Acc Id:

XM_063265861 ⟹ XP_063121931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	75,110,430 - 75,243,016 (-)	NCBI

RefSeq Acc Id:

XM_063265862 ⟹ XP_063121932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	75,119,277 - 75,243,045 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001166842	(Get FASTA)	NCBI Sequence Viewer
	XP_038937752	(Get FASTA)	NCBI Sequence Viewer
	XP_063121931	(Get FASTA)	NCBI Sequence Viewer
	XP_063121932	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95836	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021554
	ENSRNOP00000021554.5
	ENSRNOP00000110216.1

RefSeq Acc Id:

NP_001166842 ⟸ NM_001173371

- UniProtKB:

D4ACN4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLSSGACGGKAVDANPVETYDSGDEWDIGVGNLIIDLDADLEKDQQKLEMSGSKEVGIPAPNA
VATLPDNIKFVTPVPGPQGKEGKSKSKRSKSGKDTSKPTPGTSLFSPSEGAANKKEVQGRSGDG
TSAGGLVAAVAPKGSEKAAKASRSVAGSKKEKESSSSKGKKERSEGAGTCSEKDPGVLQPVPLG
GRGSQYDGNAGMDTGGVEPLGSIASEPGAALNPLGTKPEPEEGENECRPLKKVKSEKMESPVST
PAVLPLHLLVPVVNNDISSPCEQIMVRTRSVGVNTCDVALATEPECLGPCEPGTSVNLEGIVWQ
ETEDGMLVVNVTWRNKTYVGTLLDCTRHDWAPPRFCDSPTSDLEMRNGRGRGKRMRPNSNTPVS
ETATASDSKGTSSNSKTRAGANSKGRRGSQNSSEHRPPASSTSEDVKASPSSANKRKNKPLSDM
ELNSSSEDSKGSKRVRTNSMGSATGPLPGTKVEPTIVDRNCPSPVLIDCPHPNCNKKYKHINGL
KYHQAHAHTDDDSKPEADGDSEYGEEPTLHTDLSSCNGAPVSQKGSLSPARSATPKVRLVEPHS
PSPSSKFSTKGLCKKKLSGEGDTDPGASSNDGSDDGPSVVDETSNDGFDSVERKCVEKEKCKKP
SSLKPEKIPSKSLKSARPIAPAIPPQQIYTFQTATFTAASPGSSSGLTTTVVQAMPNSPQLKPI
QPKPTVMGEPFTVNPALTPAKDKKKKDKKKKDSSKELESPLTPGKVCRAEEGKSPFRESAGDGV
KMEGLLNGSSESHQSRLASIKAEADKIYSFTDNAPSPSIGGSSRLDSTTPTQPLTPLHVVTQNG
AEASSVKTNSPAYSDISDAGEDGEGKVDSAKSKDPEQLVKEGAKKTLFPPQPQSKDSAYYQGFE
SYYSPGYAQSSPGALPSSSQAGMEGQALKTKKDEEPENIEGKVKNDVCEEKKPELSSSSQQPSV
IQQRPNMYMQSLYYNQYAYVPPYGYSEQSYHTHLLSTNTAYRQQYEEQQKRQGVEQPQRGLDKK
TEMGLKEREASLKEEWKQKPSIPPTLTKAPSLTDLVKSGPGKAKEPGTDPAKSVIIPKLDDSSK
LPSQPPEGLKGKLGEASHLGKEASEAKTGTECGRQAEVDPILWYRQETEPRMWTYVYPAKYSDI
KSEDDRWKEERDRKLKEDRSRSKDSVPKEDGKESTSSDCKLPTSEEPRLGSKEPRPGVHVPVSS
PLTQHQSYIPYMHGYSYSQSYDPNHPSYRGMPAVMMQNYPGSYLPSSYSFSPYGSKVSGGEDAD
KARASPSVSCKASSESKALDILQQHASHYKSKSPTISDKNSQERDRGGCGVVGGGGSCGSVGGA
GGADRSADRPRTSPSQRLMSTHHHHHHLGYSLLPAQYNLPYAAGLSSTAIVASQQGSTPSLYPP
PRR

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Ensembl Acc Id:

ENSRNOP00000021554 ⟸ ENSRNOT00000021554

RefSeq Acc Id:	XP_038937752 ⟸ XM_039081824
- Peptide Label:	isoform X1
- UniProtKB:	D4ACN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121931 ⟸ XM_063265861
- Peptide Label:	isoform X2
- UniProtKB:	A6J5G3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121932 ⟸ XM_063265862
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000110216 ⟸ ENSRNOT00000126372

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACN4-F1-model_v2	AlphaFold	D4ACN4	1-1411	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561651	AgrOrtholog
BioCyc Gene	G2FUF-30048	BioCyc
Ensembl Genes	ENSRNOG00000015977	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021554	ENTREZGENE
	ENSRNOT00000021554.8	UniProtKB/TrEMBL
	ENSRNOT00000126372.1	UniProtKB/TrEMBL
InterPro	ZN608/ZN609	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	rno:363412	UniProtKB/TrEMBL
NCBI Gene	363412	ENTREZGENE
PANTHER	PTHR21564	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 609	UniProtKB/TrEMBL
PhenoGen	Zfp609	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015977	RatGTEx
UniProt	A0ABK0M575_RAT	UniProtKB/TrEMBL
	A6J5G3	ENTREZGENE, UniProtKB/TrEMBL
	D4ACN4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Zfp609	zinc finger protein 609	LOC315766	similar to zinc finger protein 609	Data merged from RGD:1584963	1643240	APPROVED
2011-07-19	Zfp609	zinc finger protein 609	Znf609	zinc finger protein 609	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Znf609	zinc finger protein 609	Zfp609	zinc finger protein 609	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Zfp609	zinc finger protein 609	RGD1561651_predicted	similar to zinc finger protein 609 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC315766	similar to zinc finger protein 609			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-07	RGD1561651_predicted	similar to zinc finger protein 609 (predicted)	LOC363412	similar to zinc finger protein 609	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC363412	similar to zinc finger protein 609			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD