Advanced Search (OLGA)

Gene: Armcx1 (armadillo repeat containing, X-linked 1) Rattus norvegicus

Analyze

Symbol:

Armcx1

Name:

armadillo repeat containing, X-linked 1

RGD ID:

1561629

Description:

Predicted to act upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Orthologous to human ARMCX1 (armadillo repeat containing X-linked 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

armadillo repeat-containing X-linked protein 1; LOC501619; similar to 40S ribosomal protein S29

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	102,192,225 - 102,196,130 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	102,192,015 - 102,199,115 (+)	Ensembl				GRCr8
mRatBN7.2	X	97,898,969 - 97,902,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	97,898,883 - 97,903,299 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	99,573,165 - 99,577,063 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	103,089,826 - 103,093,726 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	100,586,311 - 100,590,209 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	105,535,670 - 105,539,575 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	105,537,602 - 105,539,375 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	X	105,911,925 - 105,915,821 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	105,798,587 - 105,802,492 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	122,176,588 - 122,180,486 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	98,939,308 - 98,943,206 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

camptothecin (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diclofenac (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

furan (EXP)

gentamycin (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

menadione (ISO)

methapyrilene (EXP)

N-nitrosodiethylamine (EXP)

nickel sulfate (ISO)

niclosamide (ISO)

Nutlin-3 (ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quartz (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thapsigargin (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonal transport of mitochondrion (IBA)

hematopoietic stem cell homeostasis (ISO)

Cellular Component

axon cytoplasm (IEA)

mitochondrial outer membrane (IEA)

mitochondrion (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Armcx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	102,192,225 - 102,196,130 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	102,192,015 - 102,199,115 (+)	Ensembl				GRCr8
mRatBN7.2	X	97,898,969 - 97,902,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	97,898,883 - 97,903,299 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	99,573,165 - 99,577,063 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	103,089,826 - 103,093,726 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	100,586,311 - 100,590,209 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	105,535,670 - 105,539,575 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	105,537,602 - 105,539,375 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	X	105,911,925 - 105,915,821 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	105,798,587 - 105,802,492 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	122,176,588 - 122,180,486 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	98,939,308 - 98,943,206 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

ARMCX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	101,550,547 - 101,554,700 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	101,550,411 - 101,554,704 (+)	Ensembl			hg38	GRCh38
GRCh37	X	100,805,530 - 100,809,683 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	100,692,170 - 100,696,339 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	100,611,658 - 100,615,818	NCBI
Celera	X	101,325,006 - 101,329,176 (+)	NCBI		Celera
Cytogenetic Map	X	q22.1	NCBI
HuRef	X	90,613,634 - 90,617,804 (+)	NCBI		HuRef
CHM1_1	X	100,699,354 - 100,703,532 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	99,995,174 - 99,999,327 (+)	NCBI		T2T-CHM13v2.0

Armcx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	133,618,615 - 133,623,487 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	133,618,712 - 133,622,666 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	134,717,913 - 134,721,917 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	134,717,963 - 134,721,917 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	131,252,477 - 131,256,456 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	130,064,353 - 130,068,281 (+)	NCBI		MGSCv36	mm8
Celera	X	117,598,741 - 117,602,731 (+)	NCBI		Celera
Cytogenetic Map	X	E3	NCBI
cM Map	X	56.24	NCBI

Armcx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955503	7,634,140 - 7,637,403 (+)	Ensembl
ChiLan1.0	NW_004955503	7,633,088 - 7,637,415 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARMCX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	101,147,778 - 101,151,917 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	101,151,334 - 101,155,524 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	90,750,878 - 90,755,066 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	100,879,341 - 100,883,849 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

ARMCX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	75,424,083 - 75,428,414 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	75,424,336 - 75,428,402 (+)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	X	76,844,143 - 76,848,384 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	76,814,357 - 76,848,384 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	74,408,650 - 74,412,726 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	76,068,887 - 76,072,963 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	75,831,518 - 75,835,594 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Armcx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	62,896,869 - 62,900,346 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936813	576,463 - 577,854 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936813	574,939 - 578,228 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARMCX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	83,132,792 - 83,136,917 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	83,132,775 - 83,136,924 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ARMCX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	89,867,797 - 89,872,212 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	89,870,253 - 89,871,614 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	14,799,683 - 14,804,716 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Armcx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624902	1,042,766 - 1,053,131 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Armcx1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	87,018,480 - 87,020,617 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Armcx1
7 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	421
Count of miRNA genes:	245
Interacting mature miRNAs:	291
Transcripts:	ENSRNOT00000029833, ENSRNOT00000052422
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Markers in Region

RH130388

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	97,902,516 - 97,902,709 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	105,915,473 - 105,915,665	NCBI	Rnor6.0
Rnor_6.0	X	105,539,218 - 105,539,410	NCBI	Rnor6.0
Rnor_5.0	X	105,429,367 - 105,429,559	UniSTS	Rnor5.0
Rnor_5.0	X	105,802,135 - 105,802,327	UniSTS	Rnor5.0
RGSC_v3.4	X	122,180,136 - 122,180,328	UniSTS	RGSC3.4
Celera	X	98,942,855 - 98,943,048	UniSTS
Cytogenetic Map	X	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	50	50	121	78	11	49	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029833 ⟹ ENSRNOP00000030952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	102,192,073 - 102,199,115 (+)	Ensembl
mRatBN7.2 Ensembl	X	97,899,499 - 97,903,299 (+)	Ensembl
Rnor_6.0 Ensembl	X	105,537,602 - 105,539,375 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000052422 ⟹ ENSRNOP00000043675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	102,193,085 - 102,196,653 (+)	Ensembl
mRatBN7.2 Ensembl	X	97,898,883 - 97,903,299 (+)	Ensembl
Rnor_6.0 Ensembl	X	105,911,925 - 105,915,821 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139244 ⟹ ENSRNOP00000108980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	102,192,015 - 102,198,858 (+)	Ensembl

RefSeq Acc Id:

NM_001024367 ⟹ NP_001019538

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	102,192,225 - 102,196,123 (+)	NCBI
mRatBN7.2	X	97,898,969 - 97,902,867 (+)	NCBI
Rnor_6.0	X	105,535,670 - 105,539,568 (+)	NCBI
Rnor_5.0	X	105,798,587 - 105,802,492 (+)	NCBI
RGSC_v3.4	X	122,176,588 - 122,180,486 (+)	RGD
Celera	X	98,939,308 - 98,943,206 (+)	RGD

Sequence:

show sequence

GCCGAGAGCAGGCAGGCCTGCTGCGGAAGGAGGAGGAGAAGGTGCCTGTATCTGTGGATCTCGC
TCCCGAAGTCCAGTCAAAACGGAGAAGCAGGGAAGGGAGGAAAAGTTTCCAGAATCAAATCTGC
AAGAAGCTGGAAAGGAGGAAGGGACTACTTGGATCTCTGAGGGTGTATGTGACCGTGTCCCTGT
GAACCTGACTCAGGACATCTGCATACAAGCGTATCACTGTATCTGCTGTTGTAGCTGCCCCTAA
CCTGCAGAATCTGAAGACTTTGCTCCTGATCTGGGAATATTCTGGATCGGAACAAACCAGCTTT
GTGTCTAGGTTAAGGGACCCCAGCTGTACCATGGGTCGCACCCGGGAAGCTGGATGTGTGGCTG
CGGGCATGGTCATTGGGGCTGGTGCCTGCTACTGTGTGTACAGACTGACCTGGGGAAAAGATGA
GAATGAGAAGTTGTGGGATGATGAAGATGAGGAAGAGGAAGAAGAGGAAGAGTCTTGTAGTGGC
AAACCAGAAATTGGGGGCAAAACTGTAAAAGAACGTAAGACTCATGTTGGAGTAGGTGCGGGAG
CCAAACCTCAAGATGACTCAAAGTCCAAGGCTGAGGCGAATGTGGGACCTGAGAATGGTCCAGA
TGTAAAGAAGGAAGTGTACCCAGAATCCCATAGTGAGGGTGGCCTAGAAGCTAAGGCCAAAGCC
CTTTTCAAGTCCCTAAAGGAACAGGCAAGTGCAAAGGCAGGCAGAGGCATAAGGTTTCCTAACA
TCTCTAGGATTAGGACCCTGACATCAAGTTTGCCCTGCCCAGGAGGCAGAGGTGGAGGCTGCCA
CCCAGGAAGGACTGGCTCTAGGGCTAGGAATAGGACAAGTGGGAAAGTCAAGAGAAAGAACCGA
AGCAAGAGTAACAAGGCTCCAGCCACAGCATGGCCTGTTCGCAGGGGCAAGTTCAGCTTTCCCT
ATAAAATTGATGATATTTTGAGTGCCCCTGATCTTCAAAAGGTCCTTAACATCTTGGAGAGAAC
AAATGACCCTTTCACTCAGGAAGTAGCACTGGTCACATTGGGTAACAATGCAGCGTATTCATTT
AATCAAAATGCCATCCGTGAATTGGGTGGGGTCCCAATTATCGCAAAACTGATAAAAACAAGAG
ACCCCATTATTAGAGAAAAGACTTACAATGCTCTTAATAACTTGAGTGTTAATTCTGAAAATCA
GGGCAAGATTAAGACTTATATCAGTCAAGTGTGTGACGATACCATGGTTTGTCGATTGGACTCA
GCTGTCCAGATGGCGGGACTAAGACTCCTTACCAACATGACTGTGACTAATCACTACCAACATT
TGCTTTCCTATTCTTTCCCAGACTTCTTTGCTTTGTTATTTCTGGGAAATCACTTCACCAAGAT
ACAAACTATGAAACTAATTATAAACTTTACTGAAAACCCAGCCATGACAAGAGAGCTGGTCAGT
TGTAAGGTACCATCAGAACTGATTTCTCTCTTTAATAAAGAATGGGATAGAGAGATTCTTCTTA
ACATTCTTACCCTCTTTGAAAATATAAATGACAACATAAAAAGTGAAGGGCTTGCATCATCCAG
GAAAGAATTCAGCAGAAGCTCACTGTTTTTCTTATTTAAAGAGTCTGGAGTATGTGTTAAGAAA
ATCAAAGCATTAGCAAGTCATAAGGATCTGGTGGTCAAAGTGAAAGTTCTGAAAGTCTTAACCA
AATTATAATCTGAGATCTGTTCCAAGCAACACTGATGTGACGTTTCTTAAGTTTGCACGTGGGA
ACAATGCATTTTGTAAATCCTTAGGTTTTCATTGTTCTTGTGTAGCAAAGGGATCCTTTGAACT
GCGATTTAGGGATAATGAATATCATAAATAGTCAATAGCCATCGATGCTGGCTTTAGACTGAGC
CACTCTCAGTATGCCAAATATATATTAGAGCTTGCACAAAGAAAGCATTTATTAATTCAACTTG
CTATCTAGGTTGAGATATTTTTATTGTTTAACTAAGCTGACAGTGAAGCAACTATATGTCATAA
ATAAGCTATACTTTTGTATTGATTTAAATTTATTCATCTAAGAGTTGTGCTTTATCAATAAAGT
TATGTTTAAGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257243 ⟹ XP_006257305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	102,192,367 - 102,196,130 (+)	NCBI
mRatBN7.2	X	97,899,589 - 97,902,874 (+)	NCBI
Rnor_6.0	X	105,535,762 - 105,539,575 (+)	NCBI

Sequence:

show sequence

GGATCGCTGTATTGTGGGTAGCGGTTACAGAGATAGCGGCAACACAGTCTGCTCTCTTCACGCA
CTTGGAATGTCTTCAGATCCTTTTGGGGGTGGGAGGCGGTGAATCTTGGAGGGAGAGATTCCAG
GAGAGACCCCGGATGAGGGTTTAGGGCAGGGAGCCTTTGGCATGCAAGGACTTAGAATCTGGAG
GGACAGGTATTATGGGTTGGTGCACGGATCCTATAAAGACAGAATTTTGAGGCAGTGAGATTGT
TATCCTCTGCCATTCAGTAGGGTGCAGAGGAATAATCAACATTGAATTTCTGCAGGTCAGTCTT
AAGCTGAGACTGTCCGCGGCCTGCATATAGGTGGTGGTAGCTTTATCATAACTCGGGGCCATTA
TTGACTCTGTCAGTCGATGTGTCCGTCGTTACTTGCTCCCACCTCAGGAAAAAGGGCTGTTCTT
AAAGTTGTGCAGGAAAAAAAGGGGGGGCTATCATCGGAGTTGGGCTGGGTTCCACAGCTCGAGT
TTTCCCTTACTCGCTGGGCCCGCCCCCAGTCCTGCGCTTTCAAAGGGGTGTGGTTTTTGCTGGA
AAAAATGGCGGACCACCGCAGAAAGGAGTGCCAGGATGTAGCGGCATAGCACCCCGGCGTTGTC
AGCGGAGTCCAGAGAATTGGGGGCAGGGTGCCTGTATCTGTGGATCTCGCTCCCGAAGTCCAGT
CAAAACGGAGAAGCAGGGAAGGGAGGAAAAGTTTCCAGAATCAAATCTGCAAGAAGCTGGAAAG
GAGGAAGGGACTACTTGGATCTCTGAGGGTGTATGTGACCGTGTCCCTGTGAACCTGACTCAGG
ACATCTGCATACAAGCGTATCACTGTATCTGCTGTTGTAGCTGCCCCTAACCTGCAGAATCTGA
AGACTTTGCTCCTGATCTGGGAATATTCTGGATCGGAACAAACCAGCTTTGTGTCTAGGTTAAG
GGACCCCAGCTGTACCATGGGTCGCACCCGGGAAGCTGGATGTGTGGCTGCGGGCATGGTCATT
GGGGCTGGTGCCTGCTACTGTGTGTACAGACTGACCTGGGGAAAAGATGAGAATGAGAAGTTGT
GGGATGATGAAGATGAGGAAGAGGAAGAAGAGGAAGAGTCTTGTAGTGGCAAACCAGAAATTGG
GGGCAAAACTGTAAAAGAACGTAAGACTCATGTTGGAGTAGGTGCGGGAGCCAAACCTCAAGAT
GACTCAAAGTCCAAGGCTGAGGCGAATGTGGGACCTGAGAATGGTCCAGATGTAAAGAAGGAAG
TGTACCCAGAATCCCATAGTGAGGGTGGCCTAGAAGCTAAGGCCAAAGCCCTTTTCAAGTCCCT
AAAGGAACAGGCAAGTGCAAAGGCAGGCAGAGGCATAAGGTTTCCTAACATCTCTAGGATTAGG
ACCCTGACATCAAGTTTGCCCTGCCCAGGAGGCAGAGGTGGAGGCTGCCACCCAGGAAGGACTG
GCTCTAGGGCTAGGAATAGGACAAGTGGGAAAGTCAAGAGAAAGAACCGAAGCAAGAGTAACAA
GGCTCCAGCCACAGCATGGCCTGTTCGCAGGGGCAAGTTCAGCTTTCCCTATAAAATTGATGAT
ATTTTGAGTGCCCCTGATCTTCAAAAGGTCCTTAACATCTTGGAGAGAACAAATGACCCTTTCA
CTCAGGAAGTAGCACTGGTCACATTGGGTAACAATGCAGCGTATTCATTTAATCAAAATGCCAT
CCGTGAATTGGGTGGGGTCCCAATTATCGCAAAACTGATAAAAACAAGAGACCCCATTATTAGA
GAAAAGACTTACAATGCTCTTAATAACTTGAGTGTTAATTCTGAAAATCAGGGCAAGATTAAGA
CTTATATCAGTCAAGTGTGTGACGATACCATGGTTTGTCGATTGGACTCAGCTGTCCAGATGGC
GGGACTAAGACTCCTTACCAACATGACTGTGACTAATCACTACCAACATTTGCTTTCCTATTCT
TTCCCAGACTTCTTTGCTTTGTTATTTCTGGGAAATCACTTCACCAAGATACAAACTATGAAAC
TAATTATAAACTTTACTGAAAACCCAGCCATGACAAGAGAGCTGGTCAGTTGTAAGGTACCATC
AGAACTGATTTCTCTCTTTAATAAAGAATGGGATAGAGAGATTCTTCTTAACATTCTTACCCTC
TTTGAAAATATAAATGACAACATAAAAAGTGAAGGGCTTGCATCATCCAGGAAAGAATTCAGCA
GAAGCTCACTGTTTTTCTTATTTAAAGAGTCTGGAGTATGTGTTAAGAAAATCAAAGCATTAGC
AAGTCATAAGGATCTGGTGGTCAAAGTGAAAGTTCTGAAAGTCTTAACCAAATTATAATCTGAG
ATCTGTTCCAAGCAACACTGATGTGACGTTTCTTAAGTTTGCACGTGGGAACAATGCATTTTGT
AAATCCTTAGGTTTTCATTGTTCTTGTGTAGCAAAGGGATCCTTTGAACTGCGATTTAGGGATA
ATGAATATCATAAATAGTCAATAGCCATCGATGCTGGCTTTAGACTGAGCCACTCTCAGTATGC
CAAATATATATTAGAGCTTGCACAAAGAAAGCATTTATTAATTCAACTTGCTATCTAGGTTGAG
ATATTTTTATTGTTTAACTAAGCTGACAGTGAAGCAACTATATGTCATAAATAAGCTATACTTT
TGTATTGATTTAAATTTATTCATCTAAGAGTTGTGCTTTATCAATAAAGTTATGTTTAAGCAGA
AGAAAAAA

hide sequence

RefSeq Acc Id:

XM_039099980 ⟹ XP_038955908

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	102,192,892 - 102,196,130 (+)	NCBI
mRatBN7.2	X	97,899,612 - 97,902,874 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019538	(Get FASTA)	NCBI Sequence Viewer
	XP_006257305	(Get FASTA)	NCBI Sequence Viewer
	XP_038955908	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85780	(Get FASTA)	NCBI Sequence Viewer
	EDM07006	(Get FASTA)	NCBI Sequence Viewer
	EDM07007	(Get FASTA)	NCBI Sequence Viewer
	EDM07008	(Get FASTA)	NCBI Sequence Viewer
	EDM07009	(Get FASTA)	NCBI Sequence Viewer
	EDM07010	(Get FASTA)	NCBI Sequence Viewer
	EDM07011	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030952.5
	ENSRNOP00000043675
	ENSRNOP00000043675.3
	ENSRNOP00000108980
GenBank Protein	Q5U310	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001019538 ⟸ NM_001024367

- UniProtKB:

Q5U310 (UniProtKB/Swiss-Prot), A6IVG9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRTREAGCVAAGMVIGAGACYCVYRLTWGKDENEKLWDDEDEEEEEEEESCSGKPEIGGKTVK
ERKTHVGVGAGAKPQDDSKSKAEANVGPENGPDVKKEVYPESHSEGGLEAKAKALFKSLKEQAS
AKAGRGIRFPNISRIRTLTSSLPCPGGRGGGCHPGRTGSRARNRTSGKVKRKNRSKSNKAPATA
WPVRRGKFSFPYKIDDILSAPDLQKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGG
VPIIAKLIKTRDPIIREKTYNALNNLSVNSENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLL
TNMTVTNHYQHLLSYSFPDFFALLFLGNHFTKIQTMKLIINFTENPAMTRELVSCKVPSELISL
FNKEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSLFFLFKESGVCVKKIKALASHKDL
VVKVKVLKVLTKL

hide sequence

RefSeq Acc Id:	XP_006257305 ⟸ XM_006257243
- Peptide Label:	isoform X1
- UniProtKB:	Q5U310 (UniProtKB/Swiss-Prot), A6IVG9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRTREAGCVAAGMVIGAGACYCVYRLTWGKDENEKLWDDEDEEEEEEEESCSGKPEIGGKTVK ERKTHVGVGAGAKPQDDSKSKAEANVGPENGPDVKKEVYPESHSEGGLEAKAKALFKSLKEQAS AKAGRGIRFPNISRIRTLTSSLPCPGGRGGGCHPGRTGSRARNRTSGKVKRKNRSKSNKAPATA WPVRRGKFSFPYKIDDILSAPDLQKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGG VPIIAKLIKTRDPIIREKTYNALNNLSVNSENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLL TNMTVTNHYQHLLSYSFPDFFALLFLGNHFTKIQTMKLIINFTENPAMTRELVSCKVPSELISL FNKEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSLFFLFKESGVCVKKIKALASHKDL VVKVKVLKVLTKL hide sequence

Ensembl Acc Id:

ENSRNOP00000030952 ⟸ ENSRNOT00000029833

Ensembl Acc Id:

ENSRNOP00000043675 ⟸ ENSRNOT00000052422

RefSeq Acc Id:	XP_038955908 ⟸ XM_039099980
- Peptide Label:	isoform X1
- UniProtKB:	Q5U310 (UniProtKB/Swiss-Prot), A6IVG9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108980 ⟸ ENSRNOT00000139244

Protein Domains

Armadillo repeat-containing

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U310-F1-model_v2	AlphaFold	Q5U310	1-461	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561629	AgrOrtholog
BioCyc Gene	G2FUF-1674	BioCyc
Ensembl Genes	ENSRNOG00000037709	Ensembl
	ENSRNOG00000046862	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000029833.7	UniProtKB/Swiss-Prot
	ENSRNOT00000052422	ENTREZGENE
	ENSRNOT00000052422.6	UniProtKB/Swiss-Prot
	ENSRNOT00000139244	ENTREZGENE
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7107145	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/Swiss-Prot
	ARM-rpt_dom	UniProtKB/Swiss-Prot
	ARM-type_fold	UniProtKB/Swiss-Prot
	Armadillo	UniProtKB/Swiss-Prot
	Armcx_regulator	UniProtKB/Swiss-Prot
KEGG Report	rno:501619	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93726	IMAGE-MGC_LOAD
NCBI Gene	501619	ENTREZGENE
PANTHER	ARMADILLO REPEAT CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	ARMADILLO REPEAT-CONTAINING X-LINKED PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	Arm_2	UniProtKB/Swiss-Prot
PhenoGen	Armcx1	PhenoGen
PROSITE	ARM_REPEAT	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000037709	RatGTEx
	ENSRNOG00000046862	RatGTEx
SMART	ARM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
UniProt	A6IVG9	ENTREZGENE, UniProtKB/TrEMBL
	ARMX1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Armcx1	armadillo repeat containing, X-linked 1	LOC501619	similar to 40S ribosomal protein S29	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC501619	similar to 40S ribosomal protein S29			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD