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Gene: Tbc1d5 (TBC1 domain family, member 5) Rattus norvegicus

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Symbol:

Tbc1d5

Name:

TBC1 domain family, member 5

RGD ID:

1561626

Description:

Predicted to enable AP-2 adaptor complex binding activity; GTPase activator activity; and retromer complex binding activity. Predicted to be involved in several processes, including macroautophagy; positive regulation of receptor internalization; and retrograde transport, endosome to Golgi. Predicted to be located in autophagosome. Predicted to be part of AP-2 adaptor complex; Atg1/ULK1 kinase complex; and retromer complex. Predicted to be active in Golgi apparatus and endosome membrane. Orthologous to human TBC1D5 (TBC1 domain family member 5); PARTICIPATES IN retromer-mediated pathway; INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,5-hexanedione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC501088; RGD1561626; similar to TBC1 domain family, member 5; TBC1 domain family member 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TBC1D5 (TBC1 domain family member 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Tbc1d5 (TBC1 domain family, member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tbc1d5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TBC1D5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TBC1D5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tbc1d5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TBC1D5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TBC1D5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tbc1d5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tbc1d5 (TBC1 domain family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	YPEL3 (yippee like 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TBC1D5 (TBC1 domain family member 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tbc1d5 (TBC1 domain family, member 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tbc1d5 (TBC1 domain family, member 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GYP6	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GYP6	Alliance	DIOPT (PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	TBC1D5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbg-3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbg-3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	3,740,032 - 4,256,971 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	3,750,325 - 4,253,581 (-)	Ensembl				GRCr8
mRatBN7.2	9	3,503,328 - 4,017,131 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	3,513,623 - 4,016,913 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	4,680,753 - 5,200,179 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	9,852,802 - 10,372,136 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	8,985,996 - 9,505,071 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	1,144,641 - 1,747,732 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	1,145,700 - 1,746,397 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	1,106,437 - 1,325,473 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	9	1,393,160 - 1,704,245 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	4,112,690 - 4,650,663 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	417,936 - 917,218 (-)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,3-dinitrobenzene (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,5-hexanedione (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

aconitine (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Bufotalin (ISO)

butanal (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbendazim (EXP)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

coumarin (ISO)

dexamethasone (ISO)

diquat (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

glyphosate (EXP)

hexadecanoic acid (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

methapyrilene (ISO)

nitrates (ISO)

ochratoxin A (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

succimer (ISO)

sunitinib (ISO)

tamibarotene (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (IEA,ISO)

macroautophagy (ISO)

positive regulation of receptor internalization (ISO)

protein transport (IEA)

regulation of cilium assembly (ISO)

response to starvation (ISO)

retrograde transport, endosome to Golgi (IBA,ISO)

Cellular Component

AP-2 adaptor complex (ISO)

Atg1/ULK1 kinase complex (ISO)

autophagosome (IEA,ISO)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytosol (IEA)

endosome membrane (IBA,IEA,ISO)

Golgi apparatus (IBA)

retromer complex (IBA,ISO)

Molecular Function

AP-2 adaptor complex binding (ISO)

GTPase activator activity (IBA,IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

retromer complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

retromer-mediated pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Retromer and sorting nexins in endosomal sorting.	Gallon M and Cullen PJ, Biochem Soc Trans. 2015 Feb;43(1):33-47. doi: 10.1042/BST20140290.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17646400	PMID:19531583	PMID:20923837	PMID:22354992	PMID:24603492	PMID:25931508	PMID:27385586

Genomics

Comparative Map Data

Tbc1d5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	3,740,032 - 4,256,971 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	3,750,325 - 4,253,581 (-)	Ensembl				GRCr8
mRatBN7.2	9	3,503,328 - 4,017,131 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	3,513,623 - 4,016,913 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	4,680,753 - 5,200,179 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	9,852,802 - 10,372,136 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	8,985,996 - 9,505,071 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	1,144,641 - 1,747,732 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	1,145,700 - 1,746,397 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	1,106,437 - 1,325,473 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	9	1,393,160 - 1,704,245 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	4,112,690 - 4,650,663 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	417,936 - 917,218 (-)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

TBC1D5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	17,157,162 - 17,742,631 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	17,157,162 - 18,444,817 (-)	Ensembl			hg38	GRCh38
GRCh37	3	17,198,654 - 17,784,123 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	17,174,903 - 17,757,403 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	17,174,902 - 17,757,403	NCBI
Celera	3	17,137,647 - 17,722,084 (-)	NCBI		Celera
Cytogenetic Map	3	p24.3	NCBI
HuRef	3	17,133,466 - 17,719,908 (-)	NCBI		HuRef
CHM1_1	3	17,150,453 - 17,736,433 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	17,159,342 - 17,744,665 (-)	NCBI		T2T-CHM13v2.0

Tbc1d5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	51,040,155 - 51,488,228 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	51,040,152 - 51,486,380 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	50,733,124 - 51,181,199 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	50,733,124 - 51,179,352 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	50,872,452 - 51,318,674 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	50,198,695 - 50,644,264 (-)	NCBI		MGSCv36	mm8
Celera	17	54,189,254 - 54,641,895 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	26.47	NCBI

Tbc1d5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	9,410,475 - 9,940,460 (-)	Ensembl
ChiLan1.0	NW_004955430	9,411,865 - 9,966,710 (-)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	17,139,987 - 17,735,423 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	17,144,751 - 17,740,187 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	17,080,589 - 17,664,776 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	17,416,307 - 17,999,493 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	17,416,307 - 17,768,132 (-)	Ensembl			panPan2	panpan1.1

TBC1D5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	25,206,825 - 25,758,026 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	25,254,448 - 25,757,385 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	25,200,607 - 25,733,279 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	25,705,164 - 26,258,261 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	25,705,188 - 26,258,001 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	25,413,938 - 25,960,236 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	25,475,448 - 26,020,155 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	25,726,585 - 26,269,437 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tbc1d5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	176,730,088 - 177,155,898 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	9,868,430 - 10,188,484 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	9,868,657 - 10,294,554 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	4,201,255 - 4,633,312 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	4,191,544 - 4,738,448 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	4,510,127 - 4,870,221 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	62,009,952 - 62,569,187 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	62,006,701 - 62,358,449 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	34,998,278 - 35,563,925 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624821	2,398,042 - 2,806,263 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624821	2,398,211 - 3,068,212 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tbc1d5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	57,535,151 - 57,536,183 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tbc1d5
3177 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	183
Count of miRNA genes:	134
Interacting mature miRNAs:	165
Transcripts:	ENSRNOT00000014171
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631533	Iresp3	Immunoglobin response QTL3	16.2		blood immunoglobulin E amount (VT:0002492)	serum immunoglobulin E level (CMO:0002101)	9	1	6094576	Rat
10054141	Gmadr4	Adrenal mass QTL 4	2.45	0.0074	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	9	1	21707400	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	1	31250552	Rat
1578675	Bss17	Bone structure and strength QTL 17	3.8		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	9	3605355	21031556	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat

Markers in Region

D9Got4

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	3,557,266 - 3,557,403 (-)	MAPPER	mRatBN7.2
Rnor_6.0	9	1,702,768 - 1,702,904	NCBI	Rnor6.0
Rnor_5.0	9	1,660,616 - 1,660,752	UniSTS	Rnor5.0
RGSC_v3.4	9	4,606,822 - 4,606,959	RGD	RGSC3.4
RGSC_v3.4	9	4,606,823 - 4,606,959	UniSTS	RGSC3.4
Celera	9	461,040 - 461,176	UniSTS
RGSC_v3.1	9	4,606,822 - 4,606,959	RGD
Cytogenetic Map	9	q11	UniSTS

RH139882

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	3,673,796 - 3,674,013 (-)	MAPPER	mRatBN7.2
Rnor_6.0	9	1,547,647 - 1,547,863	NCBI	Rnor6.0
Rnor_5.0	9	1,507,302 - 1,507,518	UniSTS	Rnor5.0
RGSC_v3.4	9	4,485,475 - 4,485,691	UniSTS	RGSC3.4
Celera	9	576,510 - 576,726	UniSTS
Cytogenetic Map	9	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC162056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014171 ⟹ ENSRNOP00000014171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	3,750,325 - 4,253,581 (-)	Ensembl
mRatBN7.2 Ensembl	9	3,513,623 - 4,016,913 (-)	Ensembl
Rnor_6.0 Ensembl	9	1,145,700 - 1,746,397 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083387 ⟹ ENSRNOP00000074017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	3,750,325 - 4,253,581 (-)	Ensembl
mRatBN7.2 Ensembl	9	3,513,623 - 4,016,913 (-)	Ensembl
Rnor_6.0 Ensembl	9	1,313,209 - 1,745,262 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112471 ⟹ ENSRNOP00000094871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	3,750,325 - 4,253,581 (-)	Ensembl
mRatBN7.2 Ensembl	9	3,513,623 - 4,016,913 (-)	Ensembl

RefSeq Acc Id:

NM_001134762 ⟹ NP_001128234

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,750,325 - 4,253,581 (-)	NCBI
mRatBN7.2	9	3,513,623 - 4,016,913 (-)	NCBI
Rnor_6.0	9	1,145,700 - 1,746,397 (+)	NCBI
Rnor_5.0	9	1,106,437 - 1,325,473 (+)	NCBI
Rnor_5.0	9	1,393,160 - 1,704,245 (+)	NCBI
RGSC_v3.4	9	4,112,690 - 4,650,663 (+)	RGD
Celera	9	417,936 - 917,218 (-)	RGD

Sequence:

show sequence

CCATTCTCTTGCTGGTCGGGCCAGGCCCGGCGTGTTCCACGAGAGCCCGGCAGACTGACGGGGA
GAGAGAGAGCGAGCGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGGAGAGACAGAAAG
AGAGAGAGAAAGGAGGGGAGGAGGATGATTCAGGGAGTAGGAGCTGGGGAGCCCTGCTGCGCTA
CAGAAAACTTCTGATGGCTTGGTGAAGAGAAGAAAAACGTCAGATAGGCCAAGTACTGTCATAC
TGCAATTACTTTTGGTGACTGTCTCTACCCTGTGCAATGTATAAGTCTGTGTCTGAAACTAGAC
ATCCTCTGCAGTCAGAAGAACAAGAAGTAGGCATTGACCCCTTGTTCAGTTATTCAAACAAGCC
AAGAGGAGATTCCTGTCAAAATGGAAGAGGAGCAAATTCCAACTTAGACTGCGACGGGACTTTC
AGTTCATATATGAGAGAGTGGGACGACCTCTTTGTAAATAACAACTACTTGGCAGCAGTGAGGC
AGAAGGGGATTAATGGGCAGCTGAGAAGCAGCAGGTTCCGCAGCATTTGTTGGAAGCTCTTTCT
TTGTGTTCTTCCTCAAGATAAAAGTCAATGGATCAGTAGAATTAAAGAACTAAGATCCTGGTAT
AGCAATATTAAAGAAATACATATCACTAATCCAAGGAAAGTTGTTGGCCAACAGGATCTGATGA
TAAACAATCCCCTCTCACAAGATGAAGGAAGTCTTTGGAATAAGTTCTTTCAAGATAAAGAGCT
GCGGTCCATGATTGAGCAAGATGTCAGAAGAACGTTTCCTGAAATGCAGTTTTTCCAACAAGAA
AATGTGAGAAAAATTCTTACAGATGTTCTGTTCTGCTATGCTAGAGAAAACGAGCAGTTGCTTT
ATAAACAGGGCATGCATGAGCTGCTAGCGCCCATCATCTTCACCCTTCACTGTGACCACCAAGC
TTTTCTACACGCCAGTGAGTCTGCACAGCCCAGTGAGGAAATGAAAACTCTCTTGAACCCTGAG
TATCTGGAGCATGATGCCTATGCAATGTTCTCACAGCTTATGGAAACTGCTGAACCTTGGTTTT
CCACTTTTGAGCATGATGGTCAAAAGGGAAAAGAAACTCTGATGCCCCCCATTCCCTTTGCTCG
ACCACAGGATTTAGGACCAACAGTTGCCATTGTTACAAAAGTCAACCAGATCCAGGATCATCTA
CTGAAGAAGCATGATACTGAGCTCTACATGCACTTGAACAGACTAGAAATTCCACCACAAATAT
ATGGGTTACGGTGGGTGCGGCTGCTGTTCGGCAGAGAGTTCCCTCTACAGGACCTGCTGGTGGT
CTGGGATGCCCTGTTTGCGGACGGCCTCCACCTGAGTCTAGTTGACTATGTCTTCACGGCCATG
CTGCTCTACATCCGAGACGCTCTGATTTCTAGTAACTATCAGACCTGTCTCGGCCTTTTGATGC
ATTATCCACTCATCGGGGACATACACTCACTGATACTGAAGGCCCTGTTCCTTAGAGACCCAAA
GAGAAACCCCAGGCCAGTGACTTACCAGTTCCACCCCAATTTAGACTACTACAAAGCACGGGGA
GCTGACCTTATGAACAAAAGCCGGACCAATGCCAGAGGTGCTCCTCTGAATATACACAAGGTCT
CCAACAGCTTGATTAACTTTGGAAGAAAGTTGATTGCCCCGGCCTCAGCTCCAGGCAGTATGGG
TGGCCCTGTGCCTGGGAGCAACAGCAGCAGCTCTTTCTCTGCTGCCGTCCCCTTCAGGACCTCC
GCAGAAGCCCCGAGGCATCATTCTCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTTGATGAAGTCTGAAAGCATGCCGGTACAGTT
GAACAAAGGGCAAAGTCCGAAAACCATCAGTTCATCTCCGAGTATGGAGAGTTTGCCCGGGGGA
AGAGAACCCCCTGGCTCCCCGCCTTCATCTGCTACCAAAAGGGATTCCTTTTTCAGCCACATCG
CCCGCTCCCGCTCACACAGCAAAGCCATGGGCAGAAAAGAATCTGAAGAAGAATTAGAAGCCCA
GATTTCCTTCCTACAAGGTCAGCTGAATGACCTGGATGCCATGTGCAAGTATTGCGCAAAGGTC
ATGGACATGCATCTTGTAAATATTCAAGATGTGGTATTACAAGAGAATTTGGAAAAAGAAGATC
AAATTCTGGTGTCCTTGGCAGGATTAAAACAGATCAAAGACATTCTGAAAGGTTCCCTGCGCTT
CAACCAGAGCCAGCTGGAGGCTGAAGAGAACGAACAGATTACCATCGCTGATGACCACTACTGC
TCCAGTGGCCAGGACCAGGGCACCCAAGGCCCTAGGGCCGCCAAGCAGGCCTCTTCAGAGATGC
CAGGGTGCACAGGTGGAGCGACCTCAGACGACTTCATTCTGGTTTCTAAAGAAGATGAGGGGCG
CCGTGCGAAGGAGGCCTTCTCAGGCCAGGCCCAGCCCCTGCTCACCCTCAGAAACACGTCTGGG
AAAAGTCGAGTCCCAACCTGCTCCCCACTGGTGTTCTCAGACCCACTGATGGGCCCAGCCTCAG
CCTCCTCCAGCAACCCTAGCTCCAGCCCAGATGATGACAGCAGCAAGGACTCTGGCTTCACCAT
CGTGAGCCCCTTGGACATCTGAACACAGGGACCCACTATCGGAGACCCTCCTGAACCAGTGTCT
CTTTCTCAGCATGCTTTCACATTGGTTCAACACCCTGGAACTCTTTACAAAGAGGCAACTGTGC
TTCTTCTAGTGCACTATGTTTACCAAAATGCAGATCAAGTTTTCCAGGCCCTTAGCTGACCCTG
TGACCTTGCTCCCATTAGAGCCAGGTCAGGTCCCCTGCTCCATATCCACTGTCAGACACACCAG
TCCACAACAGAGCCACGTCTCTTCCATCCCCTCCCCAGAAGCTCTGCCAATTTACTCTCAGAAG
GAGAAGTTGGTTATCAAACTGCAGCACAGGAACTTGTGCAAAACTCTGGCGGGCAGCCTCACTC
CAGCCTTGGAGCCCAAACACAGACTAGCCACACAGGGAGCAGAGCAAGTGGCTCCCAGGGCTGG
AGTCCGAGAACTGTAGGAGCAGGGTCTCAGATTAGGGATCAGATTCTTGTCTGACACAAATGTA
TTTCTGGACCCTGTGCTACGTAAGCTTCAGCCACCACTGTTCCTCCTTGAACAACTATTTCTGC
TTCTGGAGTCCCCACAGCCAGGAGTGCAGTGGCTACACAGAGGAGAACCACATTCACACCACCC
AGAGTCAGCACTGCACAGTCCCTTCCGTGGGAGCAGGCTTCCTGTAGAACATTCCACGTGCCAC
TAGGATGCAGGGCTCCTACTCAAGCCTCTCCATTAGAGCTCAGCGGTAAACTCTATCCAGACAC
TGCAAGGACGGGCCTGCCTGCCTCAGGGCCCTGCCTGGGGTGGGTCTATTGGCCGAGTACAGAG
CTGTATTGGACACAAAGCTAGGGACAGTGGAGATTTTGATAGAGGTAGCATCTGTTAGATGGTC
CTCCTCAGAGAGCAGCTGAGCCCCTGTTAATAGGATTGTAACTCTGTACAGACAGAAATGCTAA
TGTCACGATACTCCCCATCTTAGAAAAGGAGATGTTCCAGTCAGCTCTGCCAGCCTGCCCTGAA
CTGTACTGGATAGCAGGGCTGATGACTCGCTCACATGGGAGCAAGGCTCAGTCGGGGCCTCATG
AATTCTGCCCCCTGCCTCTGACCAGTCCTCTCAGCATTCTGAGGAGCCTGCTGGCACACGGCCC
TCGAAGATGCTCTGTAAGACCCAGGGCCACCATATAACAGGCCCCCAGCCGCTGAGGGAAGACT
GTCGGCAGCCACTCCACTTGAAGGCTTGACTTAAGGTGTCAGTCAGTACCTTAGACCCAGGGCA
GGAAGTATTGACTCATCCCTCCAGGTCTGGACAGTGCTGCCCTGACTGTCACAGCTGAGGCCCT
GTTTCGTCATT

hide sequence

RefSeq Acc Id:

XM_008766768 ⟹ XP_008764990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,512,288 - 4,017,126 (-)	NCBI
Rnor_6.0	9	1,144,641 - 1,745,577 (+)	NCBI

Sequence:

show sequence

TACCACTGAGCTAAATCCCCAACCCAACCTGTTCCATTTCTGCTACAGCGAGAAGGGAATTTAA
AAAAGGGAATCACTGTGTGAAGTGTGGTATGCCTTCCTTGGAAGCTAGCTAACTTTCTGACCTT
TCTCTCATTGGGTTCCATACTCTGAACATAATGACCATTTCCTTTTGAGCTATTTGTTAAGATA
GATTAATGAAAGAGGTACACCTCTCTTTCTCTTTTTCAACTCAAATGAGGTTTTTACCACAGTA
ACTAGCGTTATCACTCAAAAGTTTTCCTACTGGAGAAGAAAATGCCAGTATCCCAGTGCTGGAG
GTTAAAGGTAATCTTAAATCATGATTAAACAGGGGCAGAGAGAGGTAAAACCAGGGTCTAGTCA
TTTGCCAAAATCGTCAGTCATTAGATGGTTAGGGAGACTAGAGTCAAGATGAAACCTATGTGGT
TTTACAGGTGTGGGGTTGCTAGAAAAGAACACCTCTTTCTGAATTCATACAGAGAAAGTCTTCA
CAAACAGCTAATGAGTCCCTCCAAAGAGTTGGGTGACATGAGCTGTCATCAGTCTGTACAGCTG
TAGACCAACAGTGAAAGGAAGGCCATTTACAGGTGACAAGGAAATTGTCCGATCCTAGGCAGAG
TGCCAGATTAGGACGTTCCCAGGGGTGACTTTTCTCCTTGCAGCCAGTTCCACCCTGAGAAGCT
GGTGCAAGTGGGGACCTGGGGTTGCAGCACAGGGCCCGCTCTTACAATCTAGTCTAGCACTGTG
TGGAGCCCCCGCGCGCATGCGCACTAGTATGGCCCAGGCAGAGCCTTAGCTCTCGGGCGTCCCC
TCTTACCTCCTCACCCCGACCTACCCCAGACACCAGGCTCCCAGCGCGCCGGTCACCCGCGGGT
CACCCGCCGGCTCGTCCCAGCCCGGCCGCGCGCCTGCGCTGGGGTCCTCGGGCGCGCGGGGTTA
CTAGAGGTGGAGCGCTGGGAGGGCGCGCGGCAGGAGGCGGACGCCGTTACGGCGGGAGCGTGGT
CACGTGGGCGCTGGTCACCGCCGCCACCTCCCGCCCCATTCTCTTGCTGGTCGGGCCAGGCCCG
GCGTGTTCCACGAGAGCCCGGCAGACTGACGGGGAGAGAGAGAGCGAGCGAAAGAGAGAGAGAG
AGAGAAAGAGAGAGAGAGAAAGGAGAGACAGAAAGAGAGAGAGAAAGGAGGGGAGGAGGATGAT
TCAGGGAGTAGGAGCTGGGGAGCCCTGCTGCGCTACAGAAAACTTCTGATGGCTTGGTGAAGAG
AAGAAAAACGTCAGATAGGCCAAGTACTGTCATACTGCAATTACTTTTGGTGACTGTCTCTACC
CTGTGCAATGTATAAGTCTGTGTCTGAAACTAGACATCCTCTGCAGTCAGAAGAACAAGAAGTA
GGCATTGACCCCTTGTTCAGTTATTCAAACAAGCCAAGAGGAGATTCCTGTCAAAATGGAAGAG
GAGCAAATTCCAACTTAGACTGCGACGGGACTTTCAGTTCATATATGAGAGAGTGGGACGACCT
CTTTGTAAATAACAACTACTTGGCAGCAGTGAGGCAGAAGGGGATTAATGGGCAGCTGAGAAGC
AGCAGGTTCCGCAGCATTTGTTGGAAGCTCTTTCTTTGTGTTCTTCCTCAAGATAAAAGTCAAT
GGATCAGTAGAATTAAAGAACTAAGATCCTGGTATAGCAATATTAAAGAAATACATATCACTAA
TCCAAGGAAAGTTGTTGGCCAACAGGATCTGATGATAAACAATCCCCTCTCACAAGATGAAGGA
AGTCTTTGGAATAAGTTCTTTCAAGATAAAGAGCTGCGGTCCATGATTGAGCAAGATGTCAGAA
GAACGTTTCCTGAAATGCAGTTTTTCCAACAAGAAAATGTGAGAAAAATTCTTACAGATGTTCT
GTTCTGCTATGCTAGAGAAAACGAGCAGTTGCTTTATAAACAGGGCATGCATGAGCTGCTAGCG
CCCATCATCTTCACCCTTCACTGTGACCACCAAGCTTTTCTACACGCCAGTGAGTCTGCACAGC
CCAGTGAGGAAATGAAAACTCTCTTGAACCCTGAGTATCTGGAGCATGATGCCTATGCAATGTT
CTCACAGCTTATGGAAACTGCTGAACCTTGGTTTTCCACTTTTGAGCATGATGGTCAAAAGGGA
AAAGAAACTCTGATGCCCCCCATTCCCTTTGCTCGACCACAGGATTTAGGACCAACAGTTGCCA
TTGTTACAAAAGTCAACCAGATCCAGGATCATCTACTGAAGAAGCATGATACTGAGCTCTACAT
GCACTTGAACAGACTAGAAATTCCACCACAAATATATGGGTTACGGTGGGTGCGGCTGCTGTTC
GGCAGAGAGTTCCCTCTACAGGACCTGCTGGTGGTCTGGGATGCCCTGTTTGCGGACGGCCTCC
ACCTGAGTCTAGTTGACTATGTCTTCACGGCCATGCTGCTCTACATCCGAGACGCTCTGATTTC
TAGTAACTATCAGACCTGTCTCGGCCTTTTGATGCATTATCCACTCATCGGGGACATACACTCA
CTGATACTGAAGGCCCTGTTCCTTAGAGACCCAAAGAGAAACCCCAGGCCAGTGACTTACCAGT
TCCACCCCAATTTAGACTACTACAAAGCACGGGGAGCTGACCTTATGAACAAAAGCCGGACCAA
TGCCAGAGGTGCTCCTCTGAATATACACAAGGTCTCCAACAGCTTGATTAACTTTGGAAGAAAG
TTGATTGCCCCGGCCTCAGCTCCAGGCAGTATGGGTGGCCCTGTGCCTGGGAGCAACAGCAGCA
GCTCTTTCTCTGCTGCCGTCCCCTTCAGGACCTCCGCAGAAGCCCCGAGGCATCATTCTCAGCA
GCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGTTGATGAAGTCTGAAAGCATGCCGGTACAGTTGAACAAAGGCGACGTAGTTACAGGAAGCG
ATGCTCAGGTTTCCGTTCCTGTCCAGGCTCTAACTGACCTCCAAGGGCAAAGTCCGAAAACCAT
CAGTTCATCTCCGAGTATGGAGAGTTTGCCCGGGGGAAGAGAACCCCCTGGCTCCCCGCCTTCA
TCTGCTACCAAAAGGGATTCCTTTTTCAGCCACATCGCCCGCTCCCGCTCACACAGCAAAGCCA
TGGGCAGAAAAGAATCTGAAGAAGAATTAGAAGCCCAGATTTCCTTCCTACAAGGTCAGCTGAA
TGACCTGGATGCCATGTGCAAGTATTGCGCAAAGGTCATGGACATGCATCTTGTAAATATTCAA
GATGTGGTATTACAAGAGAATTTGGAAAAAGAAGATCAAATTCTGGTGTCCTTGGCAGGATTAA
AACAGATCAAAGACATTCTGAAAGGTTCCCTGCGCTTCAACCAGAGCCAGCTGGAGGCTGAAGA
GAACGAACAGATTACCATCGCTGATGACCACTACTGCTCCAGTGGCCAGGACCAGGGCACCCAA
GGCCCTAGGGCCGCCAAGCAGGCCTCTTCAGAGATGCCAGGGTGCACAGGTGGAGCGACCTCAG
ACGACTTCATTCTGGTTTCTAAAGAAGATGAGGGGCGCCGTGCGAAGGAGGCCTTCTCAGGCCA
GGCCCAGCCCCTGCTCACCCTCAGAAACACGTCTGGGAAAAGTCGAGTCCCAACCTGCTCCCCA
CTGGTGTTCTCAGACCCACTGATGGGCCCAGCCTCAGCCTCCTCCAGCAACCCTAGCTCCAGCC
CAGATGATGACAGCAGCAAGGACTCTGGCTTCACCATCGTGAGCCCCTTGGACATCTGAACACA
GGGACCCACTATCGGAGACCCTCCTGAACCAGTGTCTCTTTCTCAGCATGCTTTCACATTGGTT
CAACACCCTGGAACTCTTTACAAAGAGGCAACTGTGCTTCTTCTAGTGCACTATGTTTACCAAA
ATGCAGATCAAGTTTTCCAGGCCCTTAGCTGACCCTGTGACCTTGCTCCCATTAGAGCCAGGTC
AGGTCCCCTGCTCCATATCCACTGTCAGACACACCAGTCCACAACAGAGCCACGTCTCTTCCAT
CCCCTCCCCAGAAGCTCTGCCAATTTACTCTCAGAAGGAGAAGTTGGTTATCAAACTGCAGCAC
AGGAACTTGTGCAAAACTCTGGCGGGCAGCCTCACTCCAGCCTTGGAGCCCAAACACAGACTAG
CCACACAGGGAGCAGAGCAAGTGGCTCCCAGGGCTGGAGTCCGAGAACTGTAGGAGCAGGGTCT
CAGATTAGGGATCAGATTCTTGTCTGACACAAATGTATTTCTGGACCCTGTGCTACGTAA

hide sequence

RefSeq Acc Id:

XM_017596593 ⟹ XP_017452082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,512,288 - 4,017,126 (-)	NCBI
Rnor_6.0	9	1,144,641 - 1,747,732 (+)	NCBI

Sequence:

show sequence

TACCACTGAGCTAAATCCCCAACCCAACCTGTTCCATTTCTGCTACAGCGAGAAGGGAATTTAA
AAAAGGGAATCACTGTGTGAAGTGTGGTATGCCTTCCTTGGAAGCTAGCTAACTTTCTGACCTT
TCTCTCATTGGGTTCCATACTCTGAACATAATGACCATTTCCTTTTGAGCTATTTGTTAAGATA
GATTAATGAAAGAGGTACACCTCTCTTTCTCTTTTTCAACTCAAATGAGGTTTTTACCACAGTA
ACTAGCGTTATCACTCAAAAGTTTTCCTACTGGAGAAGAAAATGCCAGTATCCCAGTGCTGGAG
GTTAAAGGTAATCTTAAATCATGATTAAACAGGGGCAGAGAGAGGTAAAACCAGGGTCTAGTCA
TTTGCCAAAATCGTCAGTCATTAGATGGTTAGGGAGACTAGAGTCAAGATGAAACCTATGTGGT
TTTACAGGTGTGGGGTTGCTAGAAAAGAACACCTCTTTCTGAATTCATACAGAGAAAGTCTTCA
CAAACAGCTAATGAGTCCCTCCAAAGAGTTGGGTGACATGAGCTGTCATCAGTCTGTACAGCTG
TAGACCAACAGTGAAAGGAAGGCCATTTACAGGTGACAAGGAAATTGTCCGATCCTAGGCAGAG
TGCCAGATTAGGACGTTCCCAGGGGTGACTTTTCTCCTTGCAGCCAGTTCCACCCTGAGAAGCT
GGTGCAAGTGGGGACCTGGGGTTGCAGCACAGGGCCCGCTCTTACAATCTAGTCTAGCACTGTG
TGGAGCCCCCGCGCGCATGCGCACTAGTATGGCCCAGGCAGAGCCTTAGCTCTCGGGCGTCCCC
TCTTACCTCCTCACCCCGACCTACCCCAGACACCAGGCTCCCAGCGCGCCGGTCACCCGCGGGT
CACCCGCCGGCTCGTCCCAGCCCGGCCGCGCGCCTGCGCTGGGGTCCTCGGGCGCGCGGGGTTA
CTAGAGGTGGAGCGCTGGGAGGGCGCGCGGCAGGAGGCGGACGCCGTTACGGCGGGAGCGTGGT
CACGTGGGCGCTGGTCACCGCCGCCACCTCCCGCCCCATTCTCTTGCTGGTCGGGCCAGGCCCG
GCGTGTTCCACGAGAGCCCGGCAGACTGACGGGGAGAGAGAGAGCGAGCGAAAGAGAGAGAGAG
AGAGAAAGAGAGAGAGAGAAAGGAGAGACAGAAAGAGAGAGAGAAAGGAGGGGAGGAGGATGAT
TCAGGGAGTAGGAGCTGGGGAGCCCTGCTGCGCTACAGAAAACTTCTGATGGCTTGGTGAAGAG
AAGAAAAACGTCAGATAGGCCAAGTACTGTCATACTTGCTCATGGATGCCAACCTCTGAAGCTA
CAAGTCTGCAGTTCCCTGGTCATGGCATCCTGTCACAGCAACAGAAAGAGAACTAAGGCAGCTT
CCATGCTTCCAGCTGTATCTCACCTTATTGATGTACTCTGCAATTACTTTTGGTGACTGTCTCT
ACCCTGTGCAATGTATAAGTCTGTGTCTGAAACTAGACATCCTCTGCAGTCAGAAGAACAAGAA
GTAGGCATTGACCCCTTGTTCAGTTATTCAAACAAGCCAAGAGGAGATTCCTGTCAAAATGGAA
GAGGAGCAAATTCCAACTTAGACTGCGACGGGACTTTCAGTTCATATATGAGAGAGTGGGACGA
CCTCTTTGTAAATAACAACTACTTGGCAGCAGTGAGGCAGAAGGGGATTAATGGGCAGCTGAGA
AGCAGCAGGTTCCGCAGCATTTGTTGGAAGCTCTTTCTTTGTGTTCTTCCTCAAGATAAAAGTC
AATGGATCAGTAGAATTAAAGAACTAAGATCCTGGTATAGCAATATTAAAGAAATACATATCAC
TAATCCAAGGAAAGTTGTTGGCCAACAGGATCTGATGATAAACAATCCCCTCTCACAAGATGAA
GGAAGTCTTTGGAATAAGTTCTTTCAAGATAAAGAGCTGCGGTCCATGATTGAGCAAGATGTCA
GAAGAACGTTTCCTGAAATGCAGTTTTTCCAACAAGAAAATGTGAGAAAAATTCTTACAGATGT
TCTGTTCTGCTATGCTAGAGAAAACGAGCAGTTGCTTTATAAACAGGGCATGCATGAGCTGCTA
GCGCCCATCATCTTCACCCTTCACTGTGACCACCAAGCTTTTCTACACGCCAGTGAGTCTGCAC
AGCCCAGTGAGGAAATGAAAACTCTCTTGAACCCTGAGTATCTGGAGCATGATGCCTATGCAAT
GTTCTCACAGCTTATGGAAACTGCTGAACCTTGGTTTTCCACTTTTGAGCATGATGGTCAAAAG
GGAAAAGAAACTCTGATGCCCCCCATTCCCTTTGCTCGACCACAGGATTTAGGACCAACAGTTG
CCATTGTTACAAAAGTCAACCAGATCCAGGATCATCTACTGAAGAAGCATGATACTGAGCTCTA
CATGCACTTGAACAGACTAGAAATTCCACCACAAATATATGGGTTACGGTGGGTGCGGCTGCTG
TTCGGCAGAGAGTTCCCTCTACAGGACCTGCTGGTGGTCTGGGATGCCCTGTTTGCGGACGGCC
TCCACCTGAGTCTAGTTGACTATGTCTTCACGGCCATGCTGCTCTACATCCGAGACGCTCTGAT
TTCTAGTAACTATCAGACCTGTCTCGGCCTTTTGATGCATTATCCACTCATCGGGGACATACAC
TCACTGATACTGAAGGCCCTGTTCCTTAGAGACCCAAAGAGAAACCCCAGGCCAGTGACTTACC
AGTTCCACCCCAATTTAGACTACTACAAAGCACGGGGAGCTGACCTTATGAACAAAAGCCGGAC
CAATGCCAGAGGTGCTCCTCTGAATATACACAAGGTCTCCAACAGCTTGATTAACTTTGGAAGA
AAGTTGATTGCCCCGGCCTCAGCTCCAGGCAGTATGGGTGGCCCTGTGCCTGGGAGCAACAGCA
GCAGCTCTTTCTCTGCTGCCGTCCCCTTCAGGACCTCCGCAGAAGCCCCGAGGCATCATTCTCA
GCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCGGTTGATGAAGTCTGAAAGCATGCCGGTACAGTTGAACAAAGGCGACGTAGTTACAGGAA
GCGATGCTCAGGTTTCCGTTCCTGTCCAGGCTCTAACTGACCTCCAAGGGCAAAGTCCGAAAAC
CATCAGTTCATCTCCGAGTATGGAGAGTTTGCCCGGGGGAAGAGAACCCCCTGGCTCCCCGCCT
TCATCTGCTACCAAAAGGGATTCCTTTTTCAGCCACATCGCCCGCTCCCGCTCACACAGCAAAG
CCATGGGCAGAAAAGAATCTGAAGAAGAATTAGAAGCCCAGATTTCCTTCCTACAAGGTCAGCT
GAATGACCTGGATGCCATGTGCAAGTATTGCGCAAAGGTCATGGACATGCATCTTGTAAATATT
CAAGATGTGGTATTACAAGAGAATTTGGAAAAAGAAGATCAAATTCTGGTGTCCTTGGCAGGAT
TAAAACAGATCAAAGACATTCTGAAAGGTTCCCTGCGCTTCAACCAGAGCCAGCTGGAGGCTGA
AGAGAACGAACAGATTACCATCGCTGATGACCACTACTGCTCCAGTGGCCAGGACCAGGGCACC
CAAGGCCCTAGGGCCGCCAAGCAGGCCTCTTCAGAGATGCCAGGGTGCACAGGTGGAGCGACCT
CAGACGACTTCATTCTGGTTTCTAAAGAAGATGAGGGGCGCCGTGCGAAGGAGGCCTTCTCAGG
CCAGGCCCAGCCCCTGCTCACCCTCAGAAACACGTCTGGGAAAAGTCGAGTCCCAACCTGCTCC
CCACTGGTGTTCTCAGACCCACTGATGGGCCCAGCCTCAGCCTCCTCCAGCAACCCTAGCTCCA
GCCCAGATGATGACAGCAGCAAGGACTCTGGCTTCACCATCGTGAGCCCCTTGGACATCTGAAC
ACAGGGACCCACTATCGGAGACCCTCCTGAACCAGTGTCTCTTTCTCAGCATGCTTTCACATTG
GTTCAACACCCTGGAACTCTTTACAAAGAGGCAACTGTGCTTCTTCTAGTGCACTATGTTTACC
AAAATGCAGATCAAGTTTTCCAGGCCCTTAGCTGACCCTGTGACCTTGCTCCCATTAGAGCCAG
GTCAGGTCCCCTGCTCCATATCCACTGTCAGACACACCAGTCCACAACAGAGCCACGTCTCTTC
CATCCCCTCCCCAGAAGCTCTGCCAATTTACTCTCAGAAGGAGAAGTTGGTTATCAAACTGCAG
CACAGGAACTTGTGCAAAACTCTGGCGGGCAGCCTCACTCCAGCCTTGGAGCCCAAACACAGAC
TAGCCACACAGGGAGCAGAGCAAGTGGCTCCCAGGGCTGGAGTCCGAGAACTGTAGGAGCAGGG
TCTCAGATTAGGGATCAGATTCTTGTCTGACACAAATGTATTTCTGGACCCTGTGCTACGTAAG
CTTCAGCCACCACTGTTCCTCCTTGAACAACTATTTCTGCTTCTGGAGTCCCCACAGCCAGGAG
TGCAGTGGCTACACAGAGGAGAACCACATTCACACCACCCAGAGTCAGCACTGCACAGTCCCTT
CCGTGGGAGCAGGCTTCCTGTAGAACATTCCACGTGCCACTAGGATGCAGGGCTCCTACTCAAG
CCTCTCCATTAGAGCTCAGCGGTAAACTCTATCCAGACACTGCAAGGACGGGCCTGCCTGCCTC
AGGGCCCTGCCTGGGGTGGGTCTATTGGCCGAGTACAGAGCTGTATTGGACACAAAGCTAGGGA
CAGTGGAGATTTTGATAGAGGTAGCATCTGTTAGATGGTCCTCCTCAGAGAGCAGCTGAGCCCC
TGTTAATAGGATTGTAACTCTGTACAGACAGAAATGCTAATGTCACGATACTCCCCATCTTAGA
AAAGGAGATGTTCCAGTCAGCTCTGCCAGCCTGCCCTGAACTGTACTGGATAGCAGGGCTGATG
ACTCGCTCACATGGGAGCAAGGCTCAGTCGGGGCCTCATGAATTCTGCCCCCTGCCTCTGACCA
GTCCTCTCAGCATTCTGAGGAGCCTGCTGGCACACGGCCCTCGAAGATGCTCTGTAAGACCCAG
GGCCACCATATAACAGGCCCCCAGCCGCTGAGGGAAGACTGTCGGCAGCCACTCCACTTGAAGG
CTTGACTTAAGGTGTCAGTCAGTACCTTAGACCCAGGGCAGGAAGTATTGACTCATCCCTCCAG
GTCTGGACAGTGCTGCCCTGACTGTCACAGCTGAGGCCCTGTTTCGTCATTTCCTTTGCTTTGA
GAGTAAGGGCCATAGATGACTGTCACGGGCTCCCCACCAGGCCAAGAAGGTGGTCTGTGGCTCC
TGCCATTTGAATGGGCATTTCAGAGTCCCTCGACCTACCTGCCCTGCCCATGCCCATGATGTGC
CCCCCATCCTGTGCTTGTGTGGGTGCCACATGAGAACCCCCAGGTCCACACTGAGATGTCTCTA
TGGTCCCTAGTCAGGCCCCTCTCTCCTGGGAAGATCCAGGGTTGGAGAGCTCTCTGGTCTAACA
GACTCCGCCCTTGGTTGATGAACATCGCTTCCTTTTGTCCTGCATTGCTGGTGTGGACTGCGTT
CCTCCGCTGTCCTATCAGGTACTTCTGTCTAATTGTACATTTCAAAGTCCTGGATATATGGAAC
TTTTTTCTTTAACCACATGGTAATCATCAGTTTTAATCTCTCACATTTTGATTATAGCAGCTAA
ATACAGTTTTCTATATGCCAAGCTTAGATTAAGCCCCACTGTCATCTGCTTTTTTTACACACGT
CTGTGTTTCATACAGTCCTCTTTTATCAGAGCGGGCAGTAAGAGGTAAAGCACATCTGTGCTAC
AGAGGGTCACAGACTTGCCTTGTCTCCCAGTTGTGCCTCCGTTCGCTTCAAGGGGCCTTCCTGG
CTTAGTTTGTCAAGATGGCCTGCTGTTCTGCACTAACTGCAACTTGAAGTGATCACACTGCTGA
CCAGCGTAACTCTTGAGGGCAGCCGCCTCCCTGGATGGAGCCTGCTTCTGGTAGGGATGCCTCT
CCTCCGCACAGGTGTTCTCCCTGCTGGACGAGCTTGCCCGCCATGCCTTTGGTGTTGGAAAAAC
TGAATAAATGCAAAACCTCCAGCTTAATCTGCTGGTCAATACGGATTGCTTTTGGCTAAAAGTT
CTGCCAGTGGCCACTAAGGGACAAAGTGTGGAACACCTGTGGCCCTGCATCAGCCAATGCCATC
TCTCTCCCCTGGGAACACAGTCCTGGCCTCGGCATTTACGCACAACAGGGATTTCTGGGAAATG
GGGAGGGAGGCCACGTGCACGGAGAGCTGTGGGGCAGACTCCACACAGGTCACTTGGCCTCCTG
CATGTTAAGCTGAAAACTGTTTTCTGTCTTGTTGAAAAGAGCTGTCATTCAGTAGCCAAACTGG
TGTAGATGTCGTCCTTCAGTTCATGAGGCTCAGCTCACCTAGTCAATGTCCCAGCAGTGACAAC
AATGTCCTCATGGGCCTTCATGCGGGGACTCACACTGATGGAGGAAAGACTCCTCCTTTGGCAG
GGTGGCCCCGTCTGATGTGTACTAATAAAGGACTGATGAGAA

hide sequence

RefSeq Acc Id:

XM_017596594 ⟹ XP_017452083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,512,288 - 4,017,126 (-)	NCBI
Rnor_6.0	9	1,144,641 - 1,745,577 (+)	NCBI

Sequence:

show sequence

TACCACTGAGCTAAATCCCCAACCCAACCTGTTCCATTTCTGCTACAGCGAGAAGGGAATTTAA
AAAAGGGAATCACTGTGTGAAGTGTGGTATGCCTTCCTTGGAAGCTAGCTAACTTTCTGACCTT
TCTCTCATTGGGTTCCATACTCTGAACATAATGACCATTTCCTTTTGAGCTATTTGTTAAGATA
GATTAATGAAAGAGGTACACCTCTCTTTCTCTTTTTCAACTCAAATGAGGTTTTTACCACAGTA
ACTAGCGTTATCACTCAAAAGTTTTCCTACTGGAGAAGAAAATGCCAGTATCCCAGTGCTGGAG
GTTAAAGGTAATCTTAAATCATGATTAAACAGGGGCAGAGAGAGGTAAAACCAGGGTCTAGTCA
TTTGCCAAAATCGTCAGTCATTAGATGGTTAGGGAGACTAGAGTCAAGATGAAACCTATGTGGT
TTTACAGGTGTGGGGTTGCTAGAAAAGAACACCTCTTTCTGAATTCATACAGAGAAAGTCTTCA
CAAACAGCTAATGAGTCCCTCCAAAGAGTTGGGTGACATGAGCTGTCATCAGTCTGTACAGCTG
TAGACCAACAGTGAAAGGAAGGCCATTTACAGGTGACAAGGAAATTGTCCGATCCTAGGCAGAG
TGCCAGATTAGGACGTTCCCAGGGGTGACTTTTCTCCTTGCAGCCAGTTCCACCCTGAGAAGCT
GGTGCAAGTGGGGACCTGGGGTTGCAGCACAGGGCCCGCTCTTACAATCTAGTCTAGCACTGTG
TGGAGCCCCCGCGCGCATGCGCACTAGTATGGCCCAGGCAGAGCCTTAGCTCTCGGGCGTCCCC
TCTTACCTCCTCACCCCGACCTACCCCAGACACCAGGCTCCCAGCGCGCCGGTCACCCGCGGGT
CACCCGCCGGCTCGTCCCAGCCCGGCCGCGCGCCTGCGCTGGGGTCCTCGGGCGCGCGGGGTTA
CTAGAGGTGGAGCGCTGGGAGGGCGCGCGGCAGGAGGCGGACGCCGTTACGGCGGGAGCGTGGT
CACGTGGGCGCTGGTCACCGCCGCCACCTCCCGCCCCATTCTCTTGCTGGTCGGGCCAGGCCCG
GCGTGTTCCACGAGAGCCCGGCAGACTGACGGGGAGAGAGAGAGCGAGCGAAAGAGAGAGAGAG
AGAGAAAGAGAGAGAGAGAAAGGAGAGACAGAAAGAGAGAGAGAAAGGAGGGGAGGAGGATGAT
TCAGGGAGTAGGAGCTGGGGAGCCCTGCTGCGCTACAGCCTCAGTGCTGCTCTTCTCTGAGAGA
GAAAACTTCTGATGGCTTGGTGAAGAGAAGAAAAACGTCAGATAGGCCAAGTACTGTCATACTT
GCTCATGGATGCCAACCTCTGAAGCTACAAGTCTGCAGTTCCCTGGTCATGGCATCCTGTCACA
GCAACAGAAAGAGAACTAAGGCAGCTTCCATGCTTCCAGCTGTATCTCACCTTATTGATGTACT
CTGCAATTACTTTTGGTGACTGTCTCTACCCTGTGCAATGTATAAGTCTGTGTCTGAAACTAGA
CATCCTCTGCAGTCAGAAGAACAAGAAGTAGGCATTGACCCCTTGTTCAGTTATTCAAACAAGC
CAAGAGGAGATTCCTGTCAAAATGGAAGAGGAGCAAATTCCAACTTAGACTGCGACGGGACTTT
CAGTTCATATATGAGAGAGTGGGACGACCTCTTTGTAAATAACAACTACTTGGCAGCAGTGAGG
CAGAAGGGGATTAATGGGCAGCTGAGAAGCAGCAGGTTCCGCAGCATTTGTTGGAAGCTCTTTC
TTTGTGTTCTTCCTCAAGATAAAAGTCAATGGATCAGTAGAATTAAAGAACTAAGATCCTGGTA
TAGCAATATTAAAGAAATACATATCACTAATCCAAGGAAAGTTGTTGGCCAACAGGATCTGATG
ATAAACAATCCCCTCTCACAAGATGAAGGAAGTCTTTGGAATAAGTTCTTTCAAGATAAAGAGC
TGCGGTCCATGATTGAGCAAGATGTCAGAAGAACGTTTCCTGAAATGCAGTTTTTCCAACAAGA
AAATGTGAGAAAAATTCTTACAGATGTTCTGTTCTGCTATGCTAGAGAAAACGAGCAGTTGCTT
TATAAACAGGGCATGCATGAGCTGCTAGCGCCCATCATCTTCACCCTTCACTGTGACCACCAAG
CTTTTCTACACGCCAGTGAGTCTGCACAGCCCAGTGAGGAAATGAAAACTCTCTTGAACCCTGA
GTATCTGGAGCATGATGCCTATGCAATGTTCTCACAGCTTATGGAAACTGCTGAACCTTGGTTT
TCCACTTTTGAGCATGATGGTCAAAAGGGAAAAGAAACTCTGATGCCCCCCATTCCCTTTGCTC
GACCACAGGATTTAGGACCAACAGTTGCCATTGTTACAAAAGTCAACCAGATCCAGGATCATCT
ACTGAAGAAGCATGATACTGAGCTCTACATGCACTTGAACAGACTAGAAATTCCACCACAAATA
TATGGGTTACGGTGGGTGCGGCTGCTGTTCGGCAGAGAGTTCCCTCTACAGGACCTGCTGGTGG
TCTGGGATGCCCTGTTTGCGGACGGCCTCCACCTGAGTCTAGTTGACTATGTCTTCACGGCCAT
GCTGCTCTACATCCGAGACGCTCTGATTTCTAGTAACTATCAGACCTGTCTCGGCCTTTTGATG
CATTATCCACTCATCGGGGACATACACTCACTGATACTGAAGGCCCTGTTCCTTAGAGACCCAA
AGAGAAACCCCAGGCCAGTGACTTACCAGTTCCACCCCAATTTAGACTACTACAAAGCACGGGG
AGCTGACCTTATGAACAAAAGCCGGACCAATGCCAGAGGTGCTCCTCTGAATATACACAAGGTC
TCCAACAGCTTGATTAACTTTGGAAGAAAGTTGATTGCCCCGGCCTCAGCTCCAGGCAGTATGG
GTGGCCCTGTGCCTGGGAGCAACAGCAGCAGCTCTTTCTCTGCTGCCGTCCCCTTCAGGACCTC
CGCAGAAGCCCCGAGGCATCATTCTCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTTGATGAAGTCTGAAAGCATGCCGGTACAGT
TGAACAAAGGCGACGTAGTTACAGGAAGCGATGCTCAGGTTTCCGTTCCTGTCCAGGCTCTAAC
TGACCTCCAAGGGCAAAGTCCGAAAACCATCAGTTCATCTCCGAGTATGGAGAGTTTGCCCGGG
GGAAGAGAACCCCCTGGCTCCCCGCCTTCATCTGCTACCAAAAGGGATTCCTTTTTCAGCCACA
TCGCCCGCTCCCGCTCACACAGCAAAGCCATGGGCAGAAAAGAATCTGAAGAAGAATTAGAAGC
CCAGATTTCCTTCCTACAAGGTCAGCTGAATGACCTGGATGCCATGTGCAAGTATTGCGCAAAG
GTCATGGACATGCATCTTGTAAATATTCAAGATGTGGTATTACAAGAGAATTTGGAAAAAGAAG
ATCAAATTCTGGTGTCCTTGGCAGGATTAAAACAGATCAAAGACATTCTGAAAGGTTCCCTGCG
CTTCAACCAGAGCCAGCTGGAGGCTGAAGAGAACGAACAGATTACCATCGCTGATGACCACTAC
TGCTCCAGTGGCCAGGACCAGGGCACCCAAGGCCCTAGGGCCGCCAAGCAGGCCTCTTCAGAGA
TGCCAGGGTGCACAGGTGGAGCGACCTCAGACGACTTCATTCTGGTTTCTAAAGAAGATGAGGG
GCGCCGTGCGAAGGAGGCCTTCTCAGGCCAGGCCCAGCCCCTGCTCACCCTCAGAAACACGTCT
GGGAAAAGTCGAGTCCCAACCTGCTCCCCACTGGTGTTCTCAGACCCACTGATGGGCCCAGCCT
CAGCCTCCTCCAGCAACCCTAGCTCCAGCCCAGATGATGACAGCAGCAAGGACTCTGGCTTCAC
CATCGTGAGCCCCTTGGACATCTGAACACAGGGACCCACTATCGGAGACCCTCCTGAACCAGTG
TCTCTTTCTCAGCATGCTTTCACATTGGTTCAACACCCTGGAACTCTTTACAAAGAGGCAACTG
TGCTTCTTCTAGTGCACTATGTTTACCAAAATGCAGATCAAGTTTTCCAGGCCCTTAGCTGACC
CTGTGACCTTGCTCCCATTAGAGCCAGGTCAGGTCCCCTGCTCCATATCCACTGTCAGACACAC
CAGTCCACAACAGAGCCACGTCTCTTCCATCCCCTCCCCAGAAGCTCTGCCAATTTACTCTCAG
AAGGAGAAGTTGGTTATCAAACTGCAGCACAGGAACTTGTGCAAAACTCTGGCGGGCAGCCTCA
CTCCAGCCTTGGAGCCCAAACACAGACTAGCCACACAGGGAGCAGAGCAAGTGGCTCCCAGGGC
TGGAGTCCGAGAACTGTAGGAGCAGGGTCTCAGATTAGGGATCAGATTCTTGTCTGACACAAAT
GTATTTCTGGACCCTGTGCTACGTAA

hide sequence

RefSeq Acc Id:

XM_039084050 ⟹ XP_038939978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,512,288 - 4,017,126 (-)	NCBI

RefSeq Acc Id:

XM_039084051 ⟹ XP_038939979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,216,665 (-)	NCBI
mRatBN7.2	9	3,512,288 - 3,979,986 (-)	NCBI

RefSeq Acc Id:

XM_039084053 ⟹ XP_038939981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,512,288 - 4,017,130 (-)	NCBI

RefSeq Acc Id:

XM_039084054 ⟹ XP_038939982

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,512,288 - 4,017,128 (-)	NCBI

RefSeq Acc Id:

XM_039084056 ⟹ XP_038939984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,512,288 - 4,017,131 (-)	NCBI

RefSeq Acc Id:

XM_039084057 ⟹ XP_038939985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 3,988,912 (-)	NCBI
mRatBN7.2	9	3,512,288 - 3,777,795 (-)	NCBI

RefSeq Acc Id:

XM_039084058 ⟹ XP_038939986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,906,653 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,674,429 - 4,017,124 (-)	NCBI

RefSeq Acc Id:

XM_063267572 ⟹ XP_063123642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI

RefSeq Acc Id:

XM_063267573 ⟹ XP_063123643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,216,665 (-)	NCBI

RefSeq Acc Id:

XM_063267574 ⟹ XP_063123644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI

RefSeq Acc Id:

XM_063267575 ⟹ XP_063123645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI

RefSeq Acc Id:

XM_063267576 ⟹ XP_063123646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI

RefSeq Acc Id:

XM_063267577 ⟹ XP_063123647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,748,990 - 4,256,971 (-)	NCBI

RefSeq Acc Id:

XR_005488952

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,740,032 - 4,256,971 (-)	NCBI
mRatBN7.2	9	3,503,328 - 4,017,126 (-)	NCBI

RefSeq Acc Id:

XR_010054624

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	3,740,032 - 4,256,971 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128234	(Get FASTA)	NCBI Sequence Viewer
	XP_008764990	(Get FASTA)	NCBI Sequence Viewer
	XP_017452082	(Get FASTA)	NCBI Sequence Viewer
	XP_017452083	(Get FASTA)	NCBI Sequence Viewer
	XP_038939978	(Get FASTA)	NCBI Sequence Viewer
	XP_038939979	(Get FASTA)	NCBI Sequence Viewer
	XP_038939981	(Get FASTA)	NCBI Sequence Viewer
	XP_038939982	(Get FASTA)	NCBI Sequence Viewer
	XP_038939984	(Get FASTA)	NCBI Sequence Viewer
	XP_038939985	(Get FASTA)	NCBI Sequence Viewer
	XP_038939986	(Get FASTA)	NCBI Sequence Viewer
	XP_063123642	(Get FASTA)	NCBI Sequence Viewer
	XP_063123643	(Get FASTA)	NCBI Sequence Viewer
	XP_063123644	(Get FASTA)	NCBI Sequence Viewer
	XP_063123645	(Get FASTA)	NCBI Sequence Viewer
	XP_063123646	(Get FASTA)	NCBI Sequence Viewer
	XP_063123647	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI62056	(Get FASTA)	NCBI Sequence Viewer
	EDL83026	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014171
	ENSRNOP00000014171.5
	ENSRNOP00000074017
	ENSRNOP00000074017.1
	ENSRNOP00000094871.1

RefSeq Acc Id:

NP_001128234 ⟸ NM_001134762

- UniProtKB:

F1M9Q1 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYKSVSETRHPLQSEEQEVGIDPLFSYSNKPRGDSCQNGRGANSNLDCDGTFSSYMREWDDLFV
NNNYLAAVRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIKELRSWYSNIKEIHITNPR
KVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVRRTFPEMQFFQQENVRKILTDVLFC
YARENEQLLYKQGMHELLAPIIFTLHCDHQAFLHASESAQPSEEMKTLLNPEYLEHDAYAMFSQ
LMETAEPWFSTFEHDGQKGKETLMPPIPFARPQDLGPTVAIVTKVNQIQDHLLKKHDTELYMHL
NRLEIPPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLHLSLVDYVFTAMLLYIRDALISSN
YQTCLGLLMHYPLIGDIHSLILKALFLRDPKRNPRPVTYQFHPNLDYYKARGADLMNKSRTNAR
GAPLNIHKVSNSLINFGRKLIAPASAPGSMGGPVPGSNSSSSFSAAVPFRTSAEAPRHHSQQQR
QQQQQQQQQQQQQQQQQQQRLMKSESMPVQLNKGQSPKTISSSPSMESLPGGREPPGSPPSSAT
KRDSFFSHIARSRSHSKAMGRKESEEELEAQISFLQGQLNDLDAMCKYCAKVMDMHLVNIQDVV
LQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQLEAEENEQITIADDHYCSSGQDQGTQGPR
AAKQASSEMPGCTGGATSDDFILVSKEDEGRRAKEAFSGQAQPLLTLRNTSGKSRVPTCSPLVF
SDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI

hide sequence

RefSeq Acc Id:	XP_008764990 ⟸ XM_008766768
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K712 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYKSVSETRHPLQSEEQEVGIDPLFSYSNKPRGDSCQNGRGANSNLDCDGTFSSYMREWDDLFV NNNYLAAVRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIKELRSWYSNIKEIHITNPR KVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVRRTFPEMQFFQQENVRKILTDVLFC YARENEQLLYKQGMHELLAPIIFTLHCDHQAFLHASESAQPSEEMKTLLNPEYLEHDAYAMFSQ LMETAEPWFSTFEHDGQKGKETLMPPIPFARPQDLGPTVAIVTKVNQIQDHLLKKHDTELYMHL NRLEIPPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLHLSLVDYVFTAMLLYIRDALISSN YQTCLGLLMHYPLIGDIHSLILKALFLRDPKRNPRPVTYQFHPNLDYYKARGADLMNKSRTNAR GAPLNIHKVSNSLINFGRKLIAPASAPGSMGGPVPGSNSSSSFSAAVPFRTSAEAPRHHSQQQR QQQQQQQQQQQQQQQQQQQRLMKSESMPVQLNKGDVVTGSDAQVSVPVQALTDLQGQSPKTISS SPSMESLPGGREPPGSPPSSATKRDSFFSHIARSRSHSKAMGRKESEEELEAQISFLQGQLNDL DAMCKYCAKVMDMHLVNIQDVVLQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQLEAEENE QITIADDHYCSSGQDQGTQGPRAAKQASSEMPGCTGGATSDDFILVSKEDEGRRAKEAFSGQAQ PLLTLRNTSGKSRVPTCSPLVFSDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI hide sequence

RefSeq Acc Id:	XP_017452082 ⟸ XM_017596593
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K712 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYKSVSETRHPLQSEEQEVGIDPLFSYSNKPRGDSCQNGRGANSNLDCDGTFSSYMREWDDLFV NNNYLAAVRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIKELRSWYSNIKEIHITNPR KVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVRRTFPEMQFFQQENVRKILTDVLFC YARENEQLLYKQGMHELLAPIIFTLHCDHQAFLHASESAQPSEEMKTLLNPEYLEHDAYAMFSQ LMETAEPWFSTFEHDGQKGKETLMPPIPFARPQDLGPTVAIVTKVNQIQDHLLKKHDTELYMHL NRLEIPPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLHLSLVDYVFTAMLLYIRDALISSN YQTCLGLLMHYPLIGDIHSLILKALFLRDPKRNPRPVTYQFHPNLDYYKARGADLMNKSRTNAR GAPLNIHKVSNSLINFGRKLIAPASAPGSMGGPVPGSNSSSSFSAAVPFRTSAEAPRHHSQQQR QQQQQQQQQQQQQQQQQQQRLMKSESMPVQLNKGDVVTGSDAQVSVPVQALTDLQGQSPKTISS SPSMESLPGGREPPGSPPSSATKRDSFFSHIARSRSHSKAMGRKESEEELEAQISFLQGQLNDL DAMCKYCAKVMDMHLVNIQDVVLQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQLEAEENE QITIADDHYCSSGQDQGTQGPRAAKQASSEMPGCTGGATSDDFILVSKEDEGRRAKEAFSGQAQ PLLTLRNTSGKSRVPTCSPLVFSDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI hide sequence

RefSeq Acc Id:	XP_017452083 ⟸ XM_017596594
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K712 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYKSVSETRHPLQSEEQEVGIDPLFSYSNKPRGDSCQNGRGANSNLDCDGTFSSYMREWDDLFV NNNYLAAVRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIKELRSWYSNIKEIHITNPR KVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVRRTFPEMQFFQQENVRKILTDVLFC YARENEQLLYKQGMHELLAPIIFTLHCDHQAFLHASESAQPSEEMKTLLNPEYLEHDAYAMFSQ LMETAEPWFSTFEHDGQKGKETLMPPIPFARPQDLGPTVAIVTKVNQIQDHLLKKHDTELYMHL NRLEIPPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGLHLSLVDYVFTAMLLYIRDALISSN YQTCLGLLMHYPLIGDIHSLILKALFLRDPKRNPRPVTYQFHPNLDYYKARGADLMNKSRTNAR GAPLNIHKVSNSLINFGRKLIAPASAPGSMGGPVPGSNSSSSFSAAVPFRTSAEAPRHHSQQQR QQQQQQQQQQQQQQQQQQQRLMKSESMPVQLNKGDVVTGSDAQVSVPVQALTDLQGQSPKTISS SPSMESLPGGREPPGSPPSSATKRDSFFSHIARSRSHSKAMGRKESEEELEAQISFLQGQLNDL DAMCKYCAKVMDMHLVNIQDVVLQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQLEAEENE QITIADDHYCSSGQDQGTQGPRAAKQASSEMPGCTGGATSDDFILVSKEDEGRRAKEAFSGQAQ PLLTLRNTSGKSRVPTCSPLVFSDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI hide sequence

Ensembl Acc Id:

ENSRNOP00000014171 ⟸ ENSRNOT00000014171

Ensembl Acc Id:

ENSRNOP00000074017 ⟸ ENSRNOT00000083387

RefSeq Acc Id:	XP_038939984 ⟸ XM_039084056
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939981 ⟸ XM_039084053
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939982 ⟸ XM_039084054
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939978 ⟸ XM_039084050
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K712 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939979 ⟸ XM_039084051
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K712 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939985 ⟸ XM_039084057
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038939986 ⟸ XM_039084058
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000094871 ⟸ ENSRNOT00000112471

RefSeq Acc Id:	XP_063123646 ⟸ XM_063267576
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123645 ⟸ XM_063267575
- Peptide Label:	isoform X3
- UniProtKB:	F1M9Q1 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123642 ⟸ XM_063267572
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K712 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123647 ⟸ XM_063267577
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123644 ⟸ XM_063267574
- Peptide Label:	isoform X3
- UniProtKB:	F1M9Q1 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123643 ⟸ XM_063267573
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K712 (UniProtKB/TrEMBL), A0A8I6AMF2 (UniProtKB/TrEMBL)

Protein Domains

Rab-GAP TBC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K712-F1-model_v2	AlphaFold	A0A0G2K712	1-827	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696418

Promoter ID:

EPDNEW_R6943

Type:

initiation region

Name:

Tbc1d5_1

Description:

TBC1 domain family, member 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	1,145,690 - 1,145,750	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561626	AgrOrtholog
BioCyc Gene	G2FUF-28430	BioCyc
Ensembl Genes	ENSRNOG00000010637	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014171	ENTREZGENE
	ENSRNOT00000014171.8	UniProtKB/TrEMBL
	ENSRNOT00000083387	ENTREZGENE
	ENSRNOT00000083387.3	UniProtKB/TrEMBL
	ENSRNOT00000112471.2	UniProtKB/TrEMBL
Gene3D-CATH	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7114456	IMAGE-MGC_LOAD
InterPro	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	RabGAP/TBC_dom	UniProtKB/TrEMBL
KEGG Report	rno:501088	UniProtKB/TrEMBL
MGC_CLONE	MGC:188045	IMAGE-MGC_LOAD
NCBI Gene	501088	ENTREZGENE
PANTHER	TBC1 DOMAIN FAMILY MEMBER 5	UniProtKB/TrEMBL
	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	UniProtKB/TrEMBL
Pfam	RabGAP-TBC	UniProtKB/TrEMBL
PhenoGen	Tbc1d5	PhenoGen
PROSITE	TBC_RABGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010637	RatGTEx
SMART	TBC	UniProtKB/TrEMBL
Superfamily-SCOP	RabGAP_TBC	UniProtKB/TrEMBL
UniProt	A0A0G2K712	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMF2	ENTREZGENE, UniProtKB/TrEMBL
	B1WC98_RAT	UniProtKB/TrEMBL
	F1M9Q1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Tbc1d5	TBC1 domain family, member 5	RGD1561626_predicted	similar to TBC1 domain family, member 5 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561626_predicted	similar to TBC1 domain family, member 5 (predicted)	LOC501088	similar to TBC1 domain family, member 5	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501088	similar to TBC1 domain family, member 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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