Gp9 (glycoprotein IX (platelet)) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gp9 (glycoprotein IX (platelet)) Rattus norvegicus
Analyze
Symbol: Gp9
Name: glycoprotein IX (platelet)
RGD ID: 1561601
Description: Predicted to be involved in several processes, including blood coagulation, intrinsic pathway; megakaryocyte development; and positive regulation of platelet activation. Predicted to be part of glycoprotein Ib-IX-V complex. Human ortholog(s) of this gene implicated in Bernard-Soulier syndrome. Orthologous to human GP9 (glycoprotein IX platelet); PARTICIPATES IN platelet aggregation pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glycoprotein 9; glycoprotein 9 (platelet); platelet glycoprotein IX
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,792,842 - 121,794,452 (+)NCBIGRCr8
mRatBN7.24120,235,500 - 120,237,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,714,540 - 125,715,875 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,489,331 - 121,490,666 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,113,566 - 120,114,901 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,680,671 - 119,682,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04184,931,999 - 184,933,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,965,797 - 121,967,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,196,129 - 109,197,464 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The vascular biology of the glycoprotein Ib-IX-V complex. Berndt MC, etal., Thromb Haemost. 2001 Jul;86(1):178-88.
2. Patients with Bernard-Soulier syndrome and different severity of the bleeding phenotype. Boeckelmann D, etal., Blood Cells Mol Dis. 2017 Sep;67:69-74. doi: 10.1016/j.bcmd.2017.01.010. Epub 2017 Jan 22.
3. Detection of autoantibodies against platelet glycoproteins in patients with immune thrombocytopenic purpura by flow cytometric immunobead array. He Y, etal., Clin Chim Acta. 2013 Jan 16;415:176-80. doi: 10.1016/j.cca.2012.10.035. Epub 2012 Oct 25.
4. A point mutation in glycoprotein IX coding sequence (Cys73 (TGT) to Tyr(TAT)) causes impaired surface expression of GPIb/IX/V complex in two families with Bernard-Soulier syndrome. Noda M, etal., Thromb Haemost. 1996 Dec;76(6):874-8.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Double heterozygosity for mutations in the platelet glycoprotein IX gene in three siblings with Bernard-Soulier syndrome. Wright SD, etal., Blood. 1993 May 1;81(9):2339-47.
Additional References at PubMed
PMID:15978772  


Genomics

Comparative Map Data
Gp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,792,842 - 121,794,452 (+)NCBIGRCr8
mRatBN7.24120,235,500 - 120,237,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,714,540 - 125,715,875 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,489,331 - 121,490,666 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,113,566 - 120,114,901 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,680,671 - 119,682,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04184,931,999 - 184,933,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,965,797 - 121,967,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,196,129 - 109,197,464 (+)NCBICelera
Cytogenetic Map4q34NCBI
GP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,054,845 - 129,062,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,060,779 - 129,062,406 (+)EnsemblGRCh38hg38GRCh38
GRCh373128,779,622 - 128,781,249 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,262,335 - 130,263,939 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,262,342 - 130,263,945NCBI
Celera3127,211,950 - 127,213,558 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,166,125 - 126,167,732 (+)NCBIHuRef
CHM1_13128,743,075 - 128,744,683 (+)NCBICHM1_1
T2T-CHM13v2.03131,799,713 - 131,807,274 (+)NCBIT2T-CHM13v2.0
Gp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,753,115 - 87,756,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,755,054 - 87,756,750 (+)EnsemblGRCm39 Ensembl
GRCm38687,776,131 - 87,779,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,778,072 - 87,779,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,728,130 - 87,729,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,743,777 - 87,745,403 (+)NCBIMGSCv36mm8
Celera689,715,360 - 89,716,986 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
Gp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,478,165 - 10,479,425 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,478,165 - 10,479,425 (-)NCBIChiLan1.0ChiLan1.0
GP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22126,993,599 - 126,997,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13126,998,316 - 127,002,292 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,118,762 - 126,122,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,479,202 - 133,480,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,480,173 - 133,480,706 (+)Ensemblpanpan1.1panPan2
GP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,027,790 - 3,029,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,064,497 - 3,066,213 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,048,622 - 3,050,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,048,699 - 3,049,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,768,165 - 2,769,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,090,922 - 3,092,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,055,430 - 3,057,146 (-)NCBIUU_Cfam_GSD_1.0
Gp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,128,784 - 20,129,755 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936798170,654 - 171,625 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,560,012 - 71,562,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,213,436 - 79,213,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,000,620 - 52,013,570 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,000,758 - 52,001,291 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,366,247 - 114,367,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247817,579,824 - 7,581,516 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gp9
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:37
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000013282
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat

Markers in Region
RH137081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24120,236,932 - 120,237,093 (+)MAPPERmRatBN7.2
Rnor_6.04119,682,065 - 119,682,225NCBIRnor6.0
Rnor_5.04184,933,393 - 184,933,553UniSTSRnor5.0
RGSC_v3.44121,967,191 - 121,967,351UniSTSRGSC3.4
Celera4109,197,523 - 109,197,683UniSTS
RH 3.4 Map4713.4UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 47 83 91 90 59 25 59 5 211 91 64 45 54 31

Sequence


Ensembl Acc Id: ENSRNOT00000013282   ⟹   ENSRNOP00000013282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)Ensembl
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)Ensembl
RefSeq Acc Id: NM_001031825   ⟹   NP_001026995
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84121,792,842 - 121,794,452 (+)NCBI
mRatBN7.24120,235,500 - 120,237,110 (+)NCBI
Rnor_6.04119,680,671 - 119,682,006 (+)NCBI
Rnor_5.04184,931,999 - 184,933,334 (+)NCBI
RGSC_v3.44121,965,797 - 121,967,132 (+)RGD
Celera4109,196,129 - 109,197,464 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001026995 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE16995 (Get FASTA)   NCBI Sequence Viewer  
  BAE16996 (Get FASTA)   NCBI Sequence Viewer  
  BAE17001 (Get FASTA)   NCBI Sequence Viewer  
  BAE17002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013282.3
RefSeq Acc Id: NP_001026995   ⟸   NM_001031825
- Peptide Label: precursor
- UniProtKB: Q4AEG0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013282   ⟸   ENSRNOT00000013282
Protein Domains
LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4AEG0-F1-model_v2 AlphaFold Q4AEG0 1-189 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561601 AgrOrtholog
BioCyc Gene G2FUF-43853 BioCyc
Ensembl Genes ENSRNOG00000010015 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013282.6 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  GPIb-IX-V_Complex UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR-contain_N UniProtKB/TrEMBL
KEGG Report rno:502858 UniProtKB/TrEMBL
NCBI Gene 502858 ENTREZGENE
PANTHER GLYCOPROTEIN IB BETA UniProtKB/TrEMBL
  PLATELET GLYCOPROTEIN IX UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
PhenoGen Gp9 PhenoGen
RatGTEx ENSRNOG00000010015 RatGTEx
SMART LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt Q4AE97_RAT UniProtKB/TrEMBL
  Q4AEG0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Gp9  glycoprotein IX (platelet)  Gp9  glycoprotein 9 (platelet)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Gp9  glycoprotein 9 (platelet)  Gp9  glycoprotein 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Gp9  glycoprotein 9      Symbol and Name status set to provisional 70820 PROVISIONAL