Gp9 (glycoprotein IX (platelet)) - Rat Genome Database

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Gene: Gp9 (glycoprotein IX (platelet)) Rattus norvegicus
Analyze
Symbol: Gp9
Name: glycoprotein IX (platelet)
RGD ID: 1561601
Description: Predicted to be involved in several processes, including blood coagulation, intrinsic pathway; megakaryocyte development; and positive regulation of platelet activation. Predicted to be part of glycoprotein Ib-IX-V complex. Human ortholog(s) of this gene implicated in Bernard-Soulier syndrome. Orthologous to human GP9 (glycoprotein IX platelet); PARTICIPATES IN platelet aggregation pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glycoprotein 9; glycoprotein 9 (platelet); platelet glycoprotein IX
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,792,842 - 121,794,452 (+)NCBIGRCr8
mRatBN7.24120,235,500 - 120,237,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,714,540 - 125,715,875 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,489,331 - 121,490,666 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,113,566 - 120,114,901 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,680,671 - 119,682,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04184,931,999 - 184,933,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,965,797 - 121,967,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,196,129 - 109,197,464 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9RatBernard-Soulier syndrome severityISOGP9 (Homo sapiens)13464128DNA:missense mutation:cds:c.182A>G(p.N61S)(human)RGD 
Gp9RatBernard-Soulier syndrome  ISOGP9 (Homo sapiens)11040531DNA:mutation:cds:p.C73Y(human)RGD 
Gp9RatBernard-Soulier Syndrome, Type C  ISOGP9 (Homo sapiens)1599275DNA:missense mutations:cds:p.D21G and p.N45S (human)RGD 
Gp9RatThrombocytopenic Purpura  ISOGP9 (Homo sapiens)11040532 RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9Ratalkaptonuria  ISOGP9 (Homo sapiens)8554872ClinVar Annotator: match by term: AlkaptonuriaClinVarPMID:12501223 more ...
Gp9RatBernard-Soulier syndrome  ISOGP9 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11167791 more ...
Gp9RatBernard-Soulier Syndrome, Type C  ISOGP9 (Homo sapiens)8554872ClinVar Annotator: match by term: Bernard-Soulier syndrome type CClinVarPMID:11167791 more ...
Gp9Ratgenetic disease  ISOGP9 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Gp9Ratimmunodeficiency 21  ISOGP9 (Homo sapiens)8554872ClinVar Annotator: match by term: GATA2 DEFICIENCYClinVarPMID:28492532
Gp9RatPrimary Lymphedema with Myelodysplasia  ISOGP9 (Homo sapiens)8554872ClinVar Annotator: match by term: Emberger syndromeClinVarPMID:19449416 more ...
Gp9Ratthrombocytopenia  ISOGP9 (Homo sapiens)8554872ClinVar Annotator: match by term: ThrombocytopeniaClinVarPMID:14510954 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9RatBernard-Soulier syndrome  ISOGP9 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Gp9Ratthrombocytopenia  ISOGP9 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15225244
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9RatBernard-Soulier syndrome  ISOGP9 (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
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Original Reference(s)
Gp9Rat17alpha-ethynylestradiol multiple interactionsISOGp9 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GP9 mRNACTDPMID:17942748
Gp9Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOGp9 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GP9 mRNACTDPMID:17942748
Gp9Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOGp9 (Mus musculus)64804642 more ...CTDPMID:38648751
Gp9Rat4,4'-diaminodiphenylmethane decreases expressionISOGp9 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of GP9 mRNACTDPMID:18648102
Gp9Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of GP9 mRNACTDPMID:30047161
Gp9Rataldehydo-D-glucose multiple interactionsISOGp9 (Mus musculus)6480464[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in decreased expression of GP9 mRNACTDPMID:37567420
Gp9Ratamitrole increases expressionEXP 6480464Amitrole results in increased expression of GP9 mRNACTDPMID:30047161
Gp9Ratantirheumatic drug decreases expressionISOGP9 (Homo sapiens)6480464Antirheumatic Agents results in decreased expression of GP9 mRNACTDPMID:24449571
Gp9Ratarsane affects methylationISOGP9 (Homo sapiens)6480464Arsenic affects the methylation of GP9 geneCTDPMID:25304211
Gp9Ratarsenic atom affects methylationISOGP9 (Homo sapiens)6480464Arsenic affects the methylation of GP9 geneCTDPMID:25304211
Gp9Ratbenzene decreases expressionISOGP9 (Homo sapiens)6480464Benzene results in decreased expression of GP9 mRNACTDPMID:19162166
Gp9Ratbenzo[a]pyrene increases expressionISOGp9 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of GP9 mRNACTDPMID:22610609
Gp9Ratbenzo[a]pyrene affects methylationISOGP9 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of GP9 promoterCTDPMID:27901495
Gp9Ratbenzo[b]fluoranthene decreases expressionISOGp9 (Mus musculus)6480464benzo(b)fluoranthene results in decreased expression of GP9 mRNACTDPMID:26377693
Gp9RatBenzo[k]fluoranthene increases expressionISOGp9 (Mus musculus)6480464benzo(k)fluoranthene results in increased expression of GP9 mRNACTDPMID:26377693
Gp9Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of GP9 mRNACTDPMID:25181051 and PMID:32145629
Gp9Ratcarbon nanotube decreases expressionISOGp9 (Mus musculus)6480464Nanotubes more ...CTDPMID:25554681
Gp9Ratchlorpyrifos increases expressionEXP 6480464Chlorpyrifos results in increased expression of GP9 mRNACTDPMID:20691718
Gp9Ratcopper(II) sulfate increases expressionISOGP9 (Homo sapiens)6480464Copper Sulfate results in increased expression of GP9 mRNACTDPMID:19549813
Gp9RatD-glucose multiple interactionsISOGp9 (Mus musculus)6480464[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in decreased expression of GP9 mRNACTDPMID:37567420

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Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9Ratbiological_process  ND 159840701/2007: No relevant rat dataRGD 
Gp9Ratblood coagulation involved_inISOGp9 (Mus musculus)1624291 PMID:18187573RGDPMID:18187573
Gp9Ratblood coagulation involved_inIEAUniProtKB-KW:KW-00941600115GO_REF:0000043UniProtGO_REF:0000043
Gp9Ratblood coagulation involved_inIEAUniProtKB:O88186 and ensembl:ENSMUSP000000321331600115GO_REF:0000107EnsemblGO_REF:0000107
Gp9Ratblood coagulation, intrinsic pathway involved_inISOGP9 (Homo sapiens)1624291 PMID:10501658RGDPMID:10501658
Gp9Ratblood coagulation, intrinsic pathway involved_inIEAUniProtKB:P14770 and ensembl:ENSP000003039421600115GO_REF:0000107EnsemblGO_REF:0000107
Gp9Ratcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
Gp9Rathemostasis involved_inIEAUniProtKB-KW:KW-03561600115GO_REF:0000043UniProtGO_REF:0000043
Gp9Ratmegakaryocyte development involved_inIEAUniProtKB:O88186 and ensembl:ENSMUSP000000321331600115GO_REF:0000107EnsemblGO_REF:0000107
Gp9Ratmegakaryocyte development involved_inISOGp9 (Mus musculus)1624291 PMID:18187573RGDPMID:18187573
Gp9Ratpositive regulation of platelet activation involved_inISOGP9 (Homo sapiens)1624291 PMID:1939645RGDPMID:1939645
Gp9Ratpositive regulation of platelet activation involved_inIEAUniProtKB:P14770 and ensembl:ENSP000003039421600115GO_REF:0000107EnsemblGO_REF:0000107
Gp9Ratrelease of sequestered calcium ion into cytosol involved_inISOGP9 (Homo sapiens)1624291 PMID:1939645RGDPMID:1939645
Gp9Ratrelease of sequestered calcium ion into cytosol involved_inIEAUniProtKB:P14770 and ensembl:ENSP000003039421600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 14 of 14 rows

Cellular Component

  
Object Symbol
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Term
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Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9Ratglycoprotein Ib-IX-V complex part_ofISOGP9 (Homo sapiens)1624291 PMID:1730602RGDPMID:1730602
Gp9Ratglycoprotein Ib-IX-V complex part_ofIEAUniProtKB:P14770 and ensembl:ENSP000003039421600115GO_REF:0000107EnsemblGO_REF:0000107
Gp9Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Gp9Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
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Term
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Reference
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Source
Original Reference(s)
Gp9Ratprotein binding enablesISOGP9 (Homo sapiens)1624291UniProtKB:O43597 more ...RGDPMID:1730602 more ...

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9Ratplatelet aggregation pathway  ISOGP9 (Homo sapiens)1580446 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gp9Ratcell-extracellular matrix signaling pathway  IEA 6907045 KEGGrno:04512

1 to 10 of 10 rows
#
Reference Title
Reference Citation
1. The vascular biology of the glycoprotein Ib-IX-V complex. Berndt MC, etal., Thromb Haemost. 2001 Jul;86(1):178-88.
2. Patients with Bernard-Soulier syndrome and different severity of the bleeding phenotype. Boeckelmann D, etal., Blood Cells Mol Dis. 2017 Sep;67:69-74. doi: 10.1016/j.bcmd.2017.01.010. Epub 2017 Jan 22.
3. Detection of autoantibodies against platelet glycoproteins in patients with immune thrombocytopenic purpura by flow cytometric immunobead array. He Y, etal., Clin Chim Acta. 2013 Jan 16;415:176-80. doi: 10.1016/j.cca.2012.10.035. Epub 2012 Oct 25.
4. A point mutation in glycoprotein IX coding sequence (Cys73 (TGT) to Tyr(TAT)) causes impaired surface expression of GPIb/IX/V complex in two families with Bernard-Soulier syndrome. Noda M, etal., Thromb Haemost. 1996 Dec;76(6):874-8.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Double heterozygosity for mutations in the platelet glycoprotein IX gene in three siblings with Bernard-Soulier syndrome. Wright SD, etal., Blood. 1993 May 1;81(9):2339-47.
1 to 10 of 10 rows
PMID:15978772  



Gp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,792,842 - 121,794,452 (+)NCBIGRCr8
mRatBN7.24120,235,500 - 120,237,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,714,540 - 125,715,875 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,489,331 - 121,490,666 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,113,566 - 120,114,901 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,680,671 - 119,682,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04184,931,999 - 184,933,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,965,797 - 121,967,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,196,129 - 109,197,464 (+)NCBICelera
Cytogenetic Map4q34NCBI
GP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,054,845 - 129,062,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,060,779 - 129,062,406 (+)EnsemblGRCh38hg38GRCh38
GRCh373128,779,622 - 128,781,249 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,262,335 - 130,263,939 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,262,342 - 130,263,945NCBI
Celera3127,211,950 - 127,213,558 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,166,125 - 126,167,732 (+)NCBIHuRef
CHM1_13128,743,075 - 128,744,683 (+)NCBICHM1_1
T2T-CHM13v2.03131,799,713 - 131,807,274 (+)NCBIT2T-CHM13v2.0
Gp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,753,115 - 87,756,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,755,054 - 87,756,750 (+)EnsemblGRCm39 Ensembl
GRCm38687,776,131 - 87,779,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,778,072 - 87,779,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,728,130 - 87,729,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,743,777 - 87,745,403 (+)NCBIMGSCv36mm8
Celera689,715,360 - 89,716,986 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
Gp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,478,165 - 10,479,425 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,478,165 - 10,479,425 (-)NCBIChiLan1.0ChiLan1.0
GP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22126,993,599 - 126,997,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13126,998,316 - 127,002,292 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,118,762 - 126,122,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,479,202 - 133,480,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,480,173 - 133,480,706 (+)Ensemblpanpan1.1panPan2
GP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,027,790 - 3,029,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,064,497 - 3,066,213 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,048,622 - 3,050,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,048,699 - 3,049,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,768,165 - 2,769,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,090,922 - 3,092,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,055,430 - 3,057,146 (-)NCBIUU_Cfam_GSD_1.0
Gp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,128,784 - 20,129,755 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936798170,654 - 171,625 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,560,012 - 71,562,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,213,436 - 79,213,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,000,620 - 52,013,570 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,000,758 - 52,001,291 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,366,247 - 114,367,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247817,579,824 - 7,581,516 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Gp9
6 total Variants

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:37
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000013282
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 48 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat

1 to 10 of 48 rows
RH137081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24120,236,932 - 120,237,093 (+)MAPPERmRatBN7.2
Rnor_6.04119,682,065 - 119,682,225NCBIRnor6.0
Rnor_5.04184,933,393 - 184,933,553UniSTSRnor5.0
RGSC_v3.44121,967,191 - 121,967,351UniSTSRGSC3.4
Celera4109,197,523 - 109,197,683UniSTS
RH 3.4 Map4713.4UniSTS
Cytogenetic Map4q34UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 47 83 91 90 59 25 59 5 211 91 64 45 54 31



Ensembl Acc Id: ENSRNOT00000013282   ⟹   ENSRNOP00000013282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)Ensembl
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)Ensembl
RefSeq Acc Id: NM_001031825   ⟹   NP_001026995
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84121,792,842 - 121,794,452 (+)NCBI
mRatBN7.24120,235,500 - 120,237,110 (+)NCBI
Rnor_6.04119,680,671 - 119,682,006 (+)NCBI
Rnor_5.04184,931,999 - 184,933,334 (+)NCBI
RGSC_v3.44121,965,797 - 121,967,132 (+)RGD
Celera4109,196,129 - 109,197,464 (+)RGD
Sequence:
Protein RefSeqs NP_001026995 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE16995 (Get FASTA)   NCBI Sequence Viewer  
  BAE16996 (Get FASTA)   NCBI Sequence Viewer  
  BAE17001 (Get FASTA)   NCBI Sequence Viewer  
  BAE17002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013282
  ENSRNOP00000013282.3
RefSeq Acc Id: NP_001026995   ⟸   NM_001031825
- Peptide Label: precursor
- UniProtKB: Q4AEG0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013282   ⟸   ENSRNOT00000013282
LRRCT   LRRNT

Name Modeler Protein Id AA Range Protein Structure
AF-Q4AEG0-F1-model_v2 AlphaFold Q4AEG0 1-189 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 23 of 23 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-43853 BioCyc
Ensembl Genes ENSRNOG00000010015 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013282 ENTREZGENE
  ENSRNOT00000013282.6 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  GPIb-IX-V_Complex UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR-contain_N UniProtKB/TrEMBL
KEGG Report rno:502858 UniProtKB/TrEMBL
NCBI Gene 502858 ENTREZGENE
PANTHER GLYCOPROTEIN IB BETA UniProtKB/TrEMBL
  PLATELET GLYCOPROTEIN IX UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
PhenoGen Gp9 PhenoGen
RatGTEx ENSRNOG00000010015 RatGTEx
SMART LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt Q4AE97_RAT UniProtKB/TrEMBL
  Q4AEG0 ENTREZGENE, UniProtKB/TrEMBL
1 to 23 of 23 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Gp9  glycoprotein IX (platelet)  Gp9  glycoprotein 9 (platelet)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Gp9  glycoprotein 9 (platelet)  Gp9  glycoprotein 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Gp9  glycoprotein 9      Symbol and Name status set to provisional 70820 PROVISIONAL