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Gene: Ccdc120 (coiled-coil domain containing 120) Rattus norvegicus

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Symbol:

Ccdc120

Name:

coiled-coil domain containing 120

RGD ID:

1561596

Description:

Predicted to be involved in intracellular protein localization and microtubule anchoring at centrosome. Predicted to be located in centriole. Predicted to be part of centriolar subdistal appendage. Orthologous to human CCDC120 (coiled-coil domain containing 120); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

coiled-coil domain-containing protein 120; LOC317377; RGD1561596; similar to JM11 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,437,219 - 17,443,716 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	17,425,624 - 17,444,717 (+)	Ensembl				GRCr8
mRatBN7.2	X	14,753,594 - 14,772,745 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,753,696 - 14,772,743 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	19,579,312 - 19,585,814 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,497,302 - 20,503,804 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,762,469 - 16,768,971 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,610,230 - 15,616,727 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,598,652 - 15,617,665 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	16,391,452 - 16,397,949 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	26,804,333 - 26,810,830 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	14,849,524 - 14,855,989 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-D (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol F (ISO)

butanal (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

coumarin (ISO)

dexamethasone (ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

ethylparaben (ISO)

fipronil (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

indometacin (ISO)

L-methionine (ISO)

leflunomide (ISO)

N-nitrosodiethylamine (ISO)

nitrofen (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium nitrate (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

Triptolide (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein localization (ISO)

microtubule anchoring at centrosome (ISO)

Cellular Component

centriolar subdistal appendage (ISO)

centriole (ISO)

cytoplasm (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:28422092

Genomics

Comparative Map Data

Ccdc120
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,437,219 - 17,443,716 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	17,425,624 - 17,444,717 (+)	Ensembl				GRCr8
mRatBN7.2	X	14,753,594 - 14,772,745 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,753,696 - 14,772,743 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	19,579,312 - 19,585,814 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,497,302 - 20,503,804 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,762,469 - 16,768,971 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,610,230 - 15,616,727 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,598,652 - 15,617,665 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	16,391,452 - 16,397,949 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	26,804,333 - 26,810,830 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	14,849,524 - 14,855,989 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

CCDC120
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	49,053,572 - 49,069,858 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	49,053,572 - 49,069,857 (+)	Ensembl			hg38	GRCh38
GRCh37	X	48,911,101 - 48,927,510 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,803,460 - 48,814,454 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	52,736,981 - 52,747,975 (-)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,568,375 - 46,584,146 (+)	NCBI		HuRef
CHM1_1	X	48,942,292 - 48,958,832 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	48,465,178 - 48,481,578 (+)	NCBI		T2T-CHM13v2.0

Ccdc120
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,597,953 - 7,607,563 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	7,597,953 - 7,617,144 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	7,731,714 - 7,741,324 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,731,714 - 7,750,905 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	7,308,840 - 7,318,450 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	6,888,673 - 6,898,283 (-)	NCBI		MGSCv36	mm8
Celera	X	3,729,252 - 3,738,844 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.48	NCBI

Ccdc120
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	587,321 - 592,544 (+)	Ensembl
ChiLan1.0	NW_004955543	577,078 - 594,076 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC120
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	50,543,395 - 50,559,846 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	50,546,797 - 50,563,225 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	41,341,834 - 41,367,761 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	49,207,391 - 49,223,622 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	49,207,391 - 49,223,552 (+)	Ensembl			panPan2	panpan1.1

CCDC120
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	42,206,553 - 42,217,607 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	42,210,804 - 42,216,993 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	16,577,484 - 16,593,254 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	42,338,079 - 42,353,858 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	42,338,081 - 42,353,858 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	42,324,422 - 42,340,191 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	42,312,074 - 42,327,841 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	42,406,817 - 42,422,586 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc120
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,713,749 - 34,731,113 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	964,603 - 969,992 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	954,188 - 971,507 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC120
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	43,134,275 - 43,146,775 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	43,128,938 - 43,146,777 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,976,893 - 47,994,717 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC120
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	46,161,238 - 46,178,128 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	46,170,651 - 46,177,244 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666076	11,680,553 - 11,744,011 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc120
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	831,833 - 841,884 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624893	824,834 - 841,786 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc120
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	14,389,587 - 14,399,241 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc120
15 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	280
Count of miRNA genes:	188
Interacting mature miRNAs:	216
Transcripts:	ENSRNOT00000012880
Prediction methods:	Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	4001493	24470521	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012880 ⟹ ENSRNOP00000012881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	17,425,624 - 17,444,658 (+)	Ensembl
mRatBN7.2 Ensembl	X	14,762,184 - 14,772,743 (+)	Ensembl
Rnor_6.0 Ensembl	X	15,610,230 - 15,616,727 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082383 ⟹ ENSRNOP00000069278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	17,425,624 - 17,444,658 (+)	Ensembl
mRatBN7.2 Ensembl	X	14,753,696 - 14,772,016 (+)	Ensembl
Rnor_6.0 Ensembl	X	15,598,652 - 15,617,665 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125991 ⟹ ENSRNOP00000100875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	17,425,624 - 17,444,717 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152701 ⟹ ENSRNOP00000101811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	17,433,877 - 17,444,658 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167513 ⟹ ENSRNOP00000109893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	17,438,228 - 17,444,658 (+)	Ensembl

RefSeq Acc Id:

NM_001191729 ⟹ NP_001178658

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,437,219 - 17,443,716 (+)	NCBI
mRatBN7.2	X	14,765,303 - 14,771,801 (+)	NCBI
Rnor_6.0	X	15,610,230 - 15,616,727 (+)	NCBI
Rnor_5.0	X	16,391,452 - 16,397,949 (+)	NCBI
Celera	X	14,849,524 - 14,855,989 (+)	NCBI

Sequence:

show sequence

CCTTATCCAGCCCTCAGCCACAAGGTCCAAACAGTGCAAGGATGGAAGTCAAAGGTCAGCTGAT
CAACTCTCCTACCTTCAATGCTCCAGCTGCCCTGTTTGGAGAGGCTGCCCCACAGGTGAAGTCA
GACCGTCTTCGAGGGCTGCTTGACCGCCAGCAGGCCCTGCAAGAGACCCTGAGACTGAAACTTC
AAGAGCTCAGGAAAGTGTGCCTGCAGGAGGCGGAGCTAACTGGTCAGCTGCCCCCTGAGTGCCC
ACTGGAGCCTGGTGAACGACCTCAGTTGGTCCGCCGGAGGCCTCCTGCAGCACGTGCCTACCCT
CCACCACACTCAAACCCAGCACACCACTCCTTGTGTCCTGCTGAGGAACTGGCTCTTGAGGCCC
TGGAGCGTGAGGTATCAGTACAGCAGCAGATTGCAGCCGCTGCCCGCCGCCTGGCCCTGGCCCC
TGACCTCAACGGAGAACAGAGGCGGCGCAGGCGCCAGGTACAGGTCGATGCTCTGCGAAGGCTG
CATGAGCTGGAGGAGCAGCTCAGGGACTTCCGGGCCCGCCTTGGCCTCCCGGTGCTCCAGCCAC
TGCCACTGTCTTCGGGAGCACCAGTCAATGCCCAGGGTGTCTGCCTGGGTACACGCCTTGCTCA
GCTCAGCCAAGAGGATGTAGTTCTGCACTCGGAGAGCAGCTCCCTCTCAGAGTCAGGTGCCAGC
CATGATAATGAAGAGCCTCATAGCTGCTTCCCTCTAACGGAGCGCCCCTCCCCACCAAAAGCCT
GGGACCAGTTTCGGGCGGTATCTGGGGGGAGCCCCGAGCGACGTGCCCCATGGAAACCTCCGCC
ATCAGATATTTATGGGGACCTGAAGAGCCGGCGCAACTCTGTGGCCAGCCCCACCAGCCCCACA
CGCTCGCTGCCCAGGAGTGCCTCCAGTTTTGAGGGGCGAAGTGTGCCTGCTACCCCTGTCCTCA
CCCGGGGCAGTGGCCCCCGGCTCTGCAAACCCGAAGGCCTCCATCCTCGTCAGTGGTCCGGTAG
TCAGGACTCCCAGATGGGCTTTCCTCGGCCTGACCCTGCTTCGGATCGGGCCTCTCTCTTCGCA
GCTCGTACGCGCCGCAGCAATAGCTCTGAGGCCCTGCTGGTGGACCGTGCAGCTGCTGGGGGAG
CTGGATCACCACCTGCTCCGCTGGCTCCCCCTGCTGCTGGTCCCCCAGTTTGCAAGAGCAGTGA
GGTGCTGTATGAGCGCCCCCAACCAGTCCCTTCTTTCTCTTCCCGTACCACTGGCCCCCCAGAC
CCTCCTCGGGCTGCCAGACCTAGCTCGGCTGCCCCTGCATCCCGTGGGCCCCCCCGGCTCCCAC
CTGTGTGTGGAGACTTCCTCTTGGACTACTCATTGGACCGAGGCTTGCCCCGCGGTAGTGGCGG
GGCCGGTTGGGGGGACCTGCTGCCTGCTCCTGAAGTTCCAGGACCCCTTTCCCGCAGAGACGGG
CTCCTTGCCATGCTCCCAGGTCCTCCACCCATATATGCAGCTGATGGTAGCAGCCCCCTCCTCC
GCAGCAAGGACCCCAACAGCCGTGCCATCCGTTCCAAGCCCTGTGGCTTGCCCCCAGAAGCCGT
GGAGGGTCTGGAAGTGCATCCAAACCCATTACTCTGGATGCCCCCACCCACCCGGATACCTCCA
GCTGGTGAGCGAGGTGGCCACAAGAACCTTGCCCTGGAGGGGCTGCGGGACTGGTACATCCGGA
ACTCGGGACTGGCCGTTGGTCCCCAGCGCCGGCCAATGCTCCCGCACGTGGGGCCAACACACAC
ACCCTTCCTCCATGCCCGCTGCTATGAGGTGGGCCAGTCATTGTACGGCCCTCCCAGCCAGGCA
CCGCTCCCGCACTCCAGGAGTTTTACAGCGCCCCCTGTCTCTGGCAGATACTACACGGATTTCC
TGTATCCCCCGGAGCTGAGCGCTCGTTTAAGTGACCTGACGCTAGAGGGGGAGCAGTCTTCCAG
TTCTGATACCCAGACCCCAGGGACACTGGTCTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001178658	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83832	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012881
	ENSRNOP00000012881.5
	ENSRNOP00000069278.1
	ENSRNOP00000100875.1
	ENSRNOP00000101811.1
	ENSRNOP00000109893.1

RefSeq Acc Id:

NP_001178658 ⟸ NM_001191729

- UniProtKB:

D3ZAB5 (UniProtKB/TrEMBL), A6KP84 (UniProtKB/TrEMBL), A0A0G2JUY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEVKGQLINSPTFNAPAALFGEAAPQVKSDRLRGLLDRQQALQETLRLKLQELRKVCLQEAELT
GQLPPECPLEPGERPQLVRRRPPAARAYPPPHSNPAHHSLCPAEELALEALEREVSVQQQIAAA
ARRLALAPDLNGEQRRRRRQVQVDALRRLHELEEQLRDFRARLGLPVLQPLPLSSGAPVNAQGV
CLGTRLAQLSQEDVVLHSESSSLSESGASHDNEEPHSCFPLTERPSPPKAWDQFRAVSGGSPER
RAPWKPPPSDIYGDLKSRRNSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGSGPRLCKPEGL
HPRQWSGSQDSQMGFPRPDPASDRASLFAARTRRSNSSEALLVDRAAAGGAGSPPAPLAPPAAG
PPVCKSSEVLYERPQPVPSFSSRTTGPPDPPRAARPSSAAPASRGPPRLPPVCGDFLLDYSLDR
GLPRGSGGAGWGDLLPAPEVPGPLSRRDGLLAMLPGPPPIYAADGSSPLLRSKDPNSRAIRSKP
CGLPPEAVEGLEVHPNPLLWMPPPTRIPPAGERGGHKNLALEGLRDWYIRNSGLAVGPQRRPML
PHVGPTHTPFLHARCYEVGQSLYGPPSQAPLPHSRSFTAPPVSGRYYTDFLYPPELSARLSDLT
LEGEQSSSSDTQTPGTLV

hide sequence

Ensembl Acc Id:

ENSRNOP00000069278 ⟸ ENSRNOT00000082383

Ensembl Acc Id:

ENSRNOP00000012881 ⟸ ENSRNOT00000012880

Ensembl Acc Id:

ENSRNOP00000101811 ⟸ ENSRNOT00000152701

Ensembl Acc Id:

ENSRNOP00000100875 ⟸ ENSRNOT00000125991

Ensembl Acc Id:

ENSRNOP00000109893 ⟸ ENSRNOT00000167513

Protein Domains

Cytohesin Ubiquitin Protein Inducing

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZAB5-F1-model_v2	AlphaFold	D3ZAB5	1-658	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701743

Promoter ID:

EPDNEW_R12267

Type:

single initiation site

Name:

Ccdc120_2

Description:

coiled-coil domain containing 120

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R12266

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	15,610,210 - 15,610,270	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561596	AgrOrtholog
BioCyc Gene	G2FUF-2918	BioCyc
Ensembl Genes	ENSRNOG00000009687	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012880	ENTREZGENE
	ENSRNOT00000012880.8	UniProtKB/TrEMBL
	ENSRNOT00000082383.3	UniProtKB/TrEMBL
	ENSRNOT00000125991.1	UniProtKB/TrEMBL
	ENSRNOT00000152701.1	UniProtKB/TrEMBL
	ENSRNOT00000167513.1	UniProtKB/TrEMBL
InterPro	CCDC120/INAVA	UniProtKB/TrEMBL
	DUF3338	UniProtKB/TrEMBL
KEGG Report	rno:317377	UniProtKB/TrEMBL
NCBI Gene	317377	ENTREZGENE
PANTHER	PTHR16093	UniProtKB/TrEMBL
	PTHR16093:SF5	UniProtKB/TrEMBL
Pfam	DUF3338	UniProtKB/TrEMBL
PhenoGen	Ccdc120	PhenoGen
RatGTEx	ENSRNOG00000009687	RatGTEx
UniProt	A0A0G2JUY5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L0U5_RAT	UniProtKB/TrEMBL
	A0ABK0LHS5_RAT	UniProtKB/TrEMBL
	A0ABK0M424_RAT	UniProtKB/TrEMBL
	A6KP84	ENTREZGENE, UniProtKB/TrEMBL
	D3ZAB5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Ccdc120	coiled-coil domain containing 120	RGD1561596_predicted	similar to JM11 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561596_predicted	similar to JM11 protein (predicted)	LOC317377	similar to JM11 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC317377	similar to JM11 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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