Spata31d1b (spermatogenesis associated 31 subfamily D, member 1B) - Rat Genome Database

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Gene: Spata31d1b (spermatogenesis associated 31 subfamily D, member 1B) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Spata31d1b
Name: spermatogenesis associated 31 subfamily D, member 1B
RGD ID: 1561563
Description: Orthologous to several human genes including SPATA31D1 (SPATA31 subfamily D member 1); INTERACTS WITH bisphenol A; glycidol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam75d1; Fam75d1b; family with sequence similarity 75, member D1; family with sequence similarity 75, member D1B; LOC502113; putative spermatogenesis-associated protein 31D4; RGD1561563; similar to RIKEN cDNA 1700013B16; spermatogenesis-associated protein 31D4
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,958,507 - 4,964,524 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl174,958,507 - 4,964,524 (-)EnsemblGRCr8
mRatBN7.2174,952,987 - 4,959,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,953,161 - 4,959,030 (-)EnsemblmRatBN7.2
Rnor_6.0175,332,983 - 5,336,074 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0177,551,995 - 7,561,099 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41710,858,418 - 10,864,319 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera175,074,277 - 5,079,952 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)
glycidol  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Spata31d1b
50 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:36
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000064170
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
1 2 34 4 14 6 35 7 4 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000097603   ⟹   ENSRNOP00000084786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,958,507 - 4,964,524 (-)Ensembl
mRatBN7.2 Ensembl174,953,161 - 4,959,030 (-)Ensembl
RefSeq Acc Id: NM_001408728   ⟹   NP_001395657
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,958,507 - 4,964,524 (-)NCBI
mRatBN7.2174,952,987 - 4,959,004 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001395657 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000084786
  ENSRNOP00000084786.1
Ensembl Acc Id: ENSRNOP00000084786   ⟸   ENSRNOT00000097603
RefSeq Acc Id: NP_001395657   ⟸   NM_001408728
- UniProtKB: A0A8I5ZXY1 (UniProtKB/TrEMBL)
Protein Domains
SPATA31

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561563 AgrOrtholog
BioCyc Gene G2FUF-10414 BioCyc
Ensembl Genes ENSRNOG00000069288 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097603 ENTREZGENE
  ENSRNOT00000097603.2 UniProtKB/TrEMBL
InterPro SPATA31/FAM205 UniProtKB/TrEMBL
NCBI Gene 502113 ENTREZGENE
PANTHER ACROSOME-SPECIFIC PROTEIN UniProtKB/TrEMBL
  SPERMATOGENESIS ASSOCIATED 31 SUBFAMILY D, MEMBER 1B UniProtKB/TrEMBL
Pfam FAM75 UniProtKB/TrEMBL
PhenoGen Spata31d1b PhenoGen
RatGTEx ENSRNOG00000069288 RatGTEx
UniProt A0A8I5ZXY1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Spata31d1b  spermatogenesis associated 31 subfamily D, member 1B  Spata31d1b  spermatogenesis associated 31 subfamily D, member 1B  Data merged from RGD:149736289 737654 PROVISIONAL
2021-08-09 Spata31d1b  spermatogenesis associated 31 subfamily D, member 1B      Symbol and Name status set to provisional 45752 PROVISIONAL
2012-11-07 Spata31d1b  spermatogenesis associated 31 subfamily D, member 1B  Fam75d1b  family with sequence similarity 75, member D1B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-08-03 Fam75d1b  family with sequence similarity 75, member D1B  Fam75d1  family with sequence similarity 75, member D1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Fam75d1  family with sequence similarity 75, member D1  RGD1561563  similar to RIKEN cDNA 1700013B16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561563  similar to RIKEN cDNA 1700013B16   RGD1561563_predicted  similar to RIKEN cDNA 1700013B16 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561563_predicted  similar to RIKEN cDNA 1700013B16 (predicted)  LOC502113  similar to RIKEN cDNA 1700013B16  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502113  similar to RIKEN cDNA 1700013B16      Symbol and Name status set to provisional 70820 PROVISIONAL