Gene: C3h20orf144 (similar to human chromosome 20 open reading frame 144) Rattus norvegicus
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Symbol:
C3h20orf144
Name:
similar to human chromosome 20 open reading frame 144
RGD ID:
1561517
Description:
Orthologous to human C20orf144 (chromosome 20 open reading frame 144); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; genistein.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC499927; LOC499927; RGD1561517; similar to chromosome 20 open reading frame 144; uncharacterized protein C20orf144 homolog; uncharacterized protein LOC499927
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 163,514,340 - 163,515,531 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 3 163,514,344 - 163,515,481 (+) Ensembl GRCr8 mRatBN7.2 3 143,053,971 - 143,055,327 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 143,054,001 - 143,055,323 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 3 146,920,738 - 146,921,927 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 155,538,902 - 155,540,091 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 153,278,270 - 153,279,459 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 150,052,310 - 150,053,674 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 150,052,483 - 150,053,670 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 3 156,425,069 - 156,426,309 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 3 145,022,077 - 145,023,268 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 3 141,788,612 - 141,789,803 (+) NCBI Celera Cytogenetic Map 3 q41 NCBI
JBrowse:
References
Genomics
Comparative Map Data
C3h20orf144 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 163,514,340 - 163,515,531 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 3 163,514,344 - 163,515,481 (+) Ensembl GRCr8 mRatBN7.2 3 143,053,971 - 143,055,327 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 143,054,001 - 143,055,323 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 3 146,920,738 - 146,921,927 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 155,538,902 - 155,540,091 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 153,278,270 - 153,279,459 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 150,052,310 - 150,053,674 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 150,052,483 - 150,053,670 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 3 156,425,069 - 156,426,309 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 3 145,022,077 - 145,023,268 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 3 141,788,612 - 141,789,803 (+) NCBI Celera Cytogenetic Map 3 q41 NCBI
C20orf144 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 20 33,662,327 - 33,663,908 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 20 33,662,327 - 33,665,619 (+) Ensembl hg38 GRCh38 GRCh37 20 32,250,133 - 32,251,714 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 20 31,713,781 - 31,715,381 (+) NCBI Build 36 Build 36 hg18 NCBI36 Build 34 20 31,713,780 - 31,715,381 NCBI Celera 20 29,003,152 - 29,004,752 (+) NCBI Celera Cytogenetic Map 20 q11.22 NCBI HuRef 20 29,036,189 - 29,037,818 (+) NCBI HuRef CHM1_1 20 32,151,184 - 32,152,813 (+) NCBI CHM1_1 T2T-CHM13v2.0 20 35,388,858 - 35,390,439 (+) NCBI T2T-CHM13v2.0
1700003F12Rik Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 154,390,824 - 154,391,970 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 154,389,005 - 154,391,923 (+) Ensembl GRCm39 Ensembl GRCm39 GRCm38 2 154,548,904 - 154,550,050 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 154,547,085 - 154,550,003 (+) Ensembl mm10 GRCm38 MGSCv37 2 154,374,640 - 154,375,786 (+) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 2 154,240,329 - 154,241,449 (+) NCBI MGSCv36 mm8 Celera 2 160,463,117 - 160,464,263 (+) NCBI Celera Cytogenetic Map 2 H1 NCBI cM Map 2 76.79 NCBI
CUNH20orf144 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955422 27,654,049 - 27,655,356 (-) NCBI ChiLan1.0 ChiLan1.0
C21H20orf144 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 21 39,353,156 - 39,354,993 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 20 39,344,454 - 39,349,684 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 20 29,949,587 - 29,951,317 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 20 31,090,638 - 31,092,358 (+) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 20 31,090,638 - 31,092,358 (+) Ensembl panPan2 panpan1.1
C2H20orf144 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 2 37,953,322 - 37,956,796 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 2 37,955,288 - 37,956,748 (+) Ensembl ChlSab1.1 Ensembl chlSab2 Vervet-AGM Vero_WHO_p1.0 NW_023666050 88,925,116 - 88,926,638 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
C5H20orf144
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 59 Count of miRNA genes: 53 Interacting mature miRNAs: 58 Transcripts: ENSRNOT00000022265 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction 
