Samd12 (sterile alpha motif domain containing 12) - Rat Genome Database

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Gene: Samd12 (sterile alpha motif domain containing 12) Rattus norvegicus
Analyze
Symbol: Samd12
Name: sterile alpha motif domain containing 12
RGD ID: 1561402
Description: Predicted to be involved in cell surface receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 1. Orthologous to human SAMD12 (sterile alpha motif domain containing 12); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362910; RGD1561402; similar to sterile alpha motif domain containing 12; sterile alpha motif domain-containing protein 12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8786,658,709 - 86,953,879 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl786,658,072 - 87,207,686 (-)EnsemblGRCr8
mRatBN7.2784,768,850 - 85,064,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl784,768,254 - 85,271,766 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx786,679,844 - 86,974,355 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0788,881,027 - 89,175,524 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0788,686,515 - 88,981,015 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0792,995,599 - 93,286,757 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl792,993,330 - 93,502,591 (-)Ensemblrn6Rnor6.0
Rnor_5.0793,636,142 - 93,930,174 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4789,785,050 - 90,090,875 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera781,608,279 - 81,901,215 (-)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Samd12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8786,658,709 - 86,953,879 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl786,658,072 - 87,207,686 (-)EnsemblGRCr8
mRatBN7.2784,768,850 - 85,064,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl784,768,254 - 85,271,766 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx786,679,844 - 86,974,355 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0788,881,027 - 89,175,524 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0788,686,515 - 88,981,015 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0792,995,599 - 93,286,757 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl792,993,330 - 93,502,591 (-)Ensemblrn6Rnor6.0
Rnor_5.0793,636,142 - 93,930,174 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4789,785,050 - 90,090,875 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera781,608,279 - 81,901,215 (-)NCBICelera
Cytogenetic Map7q31NCBI
SAMD12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388118,131,825 - 118,621,963 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8118,189,455 - 118,622,112 (-)Ensemblhg38GRCh38
GRCh378119,144,064 - 119,634,202 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368119,270,875 - 119,703,365 (-)NCBIBuild 36Build 36hg18NCBI36
Build 348119,459,407 - 119,703,301NCBI
Celera8115,390,217 - 115,822,474 (-)NCBICelera
Cytogenetic Map8q24.11-q24.12NCBI
HuRef8114,528,469 - 114,960,887 (-)NCBIHuRef
CHM1_18119,242,770 - 119,675,204 (-)NCBICHM1_1
T2T-CHM13v2.08119,260,296 - 119,750,442 (-)NCBIT2T-CHM13v2.0
Samd12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391553,262,514 - 53,765,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1553,317,206 - 53,765,933 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381553,399,113 - 53,902,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1553,453,810 - 53,902,537 (-)Ensemblmm10GRCm38
MGSCv371553,293,356 - 53,733,991 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361553,291,884 - 53,732,519 (-)NCBIMGSCv36mm8
Celera1555,020,883 - 55,465,415 (-)NCBICelera
Cytogenetic Map15C- D1NCBI
cM Map1521.1NCBI
Samd12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541724,145,264 - 24,541,599 (-)Ensembl
ChiLan1.0NW_00495541724,137,340 - 24,541,572 (-)NCBIChiLan1.0ChiLan1.0
SAMD12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27135,555,533 - 136,044,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18111,071,079 - 111,560,037 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08114,823,792 - 115,312,738 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18117,345,231 - 117,832,607 (-)NCBIPanPan1.1PanPan1.1panPan2
SAMD12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11317,525,855 - 17,897,153 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1317,528,421 - 17,897,009 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1317,524,208 - 17,898,719 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01317,813,622 - 18,191,246 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1317,816,236 - 18,191,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11317,552,401 - 17,946,810 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01317,651,658 - 18,029,189 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01317,897,028 - 18,274,675 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Samd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530320,432,597 - 20,864,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647027,858,427 - 28,228,114 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647027,858,661 - 28,230,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl420,143,883 - 20,570,768 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1420,143,614 - 20,570,780 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2421,342,600 - 21,379,800 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAMD12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18112,834,159 - 113,246,812 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8112,877,688 - 113,246,824 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603927,055,101 - 27,469,422 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Samd12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476316,477,471 - 16,867,493 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476316,475,162 - 16,867,444 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Samd12
1975 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:52
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000064877
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78211124596700643Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78211124595485241Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D7Rat112  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8787,086,705 - 87,086,951 (+)Marker Load Pipeline
mRatBN7.2785,196,886 - 85,197,132 (+)MAPPERmRatBN7.2
Rnor_6.0793,417,642 - 93,417,887NCBIRnor6.0
Rnor_5.0794,061,716 - 94,061,961UniSTSRnor5.0
Celera782,019,130 - 82,019,375UniSTS
RH 3.4 Map7586.8RGD
RH 3.4 Map7586.8UniSTS
RH 2.0 Map7497.5RGD
SHRSP x BN Map751.19RGD
Cytogenetic Map7q31UniSTS
D7Rat139  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8786,817,752 - 86,817,926 (+)Marker Load Pipeline
mRatBN7.2784,927,906 - 84,928,080 (+)MAPPERmRatBN7.2
Rnor_6.0793,155,229 - 93,155,402NCBIRnor6.0
Rnor_5.0793,795,643 - 93,795,816UniSTSRnor5.0
RGSC_v3.4789,944,921 - 89,945,095RGDRGSC3.4
RGSC_v3.4789,944,922 - 89,945,095UniSTSRGSC3.4
Celera781,765,848 - 81,766,021UniSTS
RGSC_v3.1789,979,152 - 89,979,325RGD
RH 3.4 Map7581.0UniSTS
RH 3.4 Map7581.0RGD
RH 2.0 Map7494.8RGD
SHRSP x BN Map752.31RGD
Cytogenetic Map7q31UniSTS
BE105380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2784,769,080 - 84,769,258 (+)MAPPERmRatBN7.2
Rnor_6.0792,995,830 - 92,996,007NCBIRnor6.0
Rnor_5.0793,636,373 - 93,636,550UniSTSRnor5.0
RGSC_v3.4789,785,281 - 89,785,458UniSTSRGSC3.4
Celera781,608,510 - 81,608,687UniSTS
RH 3.4 Map7583.2UniSTS
Cytogenetic Map7q31UniSTS
BF405999  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2784,944,817 - 84,945,065 (+)MAPPERmRatBN7.2
Rnor_6.0793,172,140 - 93,172,387NCBIRnor6.0
Rnor_5.0793,812,554 - 93,812,801UniSTSRnor5.0
RGSC_v3.4789,961,833 - 89,962,080UniSTSRGSC3.4
Celera781,782,767 - 81,783,014UniSTS
RH 3.4 Map7583.2UniSTS
Cytogenetic Map7q31UniSTS
BF415978  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2785,164,679 - 85,164,806 (+)MAPPERmRatBN7.2
Rnor_6.0793,385,026 - 93,385,152NCBIRnor6.0
Rnor_5.0794,029,078 - 94,029,204UniSTSRnor5.0
RGSC_v3.4790,193,183 - 90,193,309UniSTSRGSC3.4
Celera781,987,798 - 81,987,924UniSTS
RH 3.4 Map7587.5UniSTS
Cytogenetic Map7q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 11 63 140 88 87 56 27 56 6 252 113 121 63 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000064877   ⟹   ENSRNOP00000063213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,658,112 - 87,161,538 (-)Ensembl
mRatBN7.2 Ensembl784,768,254 - 85,271,766 (-)Ensembl
Rnor_6.0 Ensembl792,995,599 - 93,280,009 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076080   ⟹   ENSRNOP00000068009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,855,861 - 87,161,742 (-)Ensembl
mRatBN7.2 Ensembl785,034,712 - 85,271,766 (-)Ensembl
Rnor_6.0 Ensembl793,193,233 - 93,502,591 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076327   ⟹   ENSRNOP00000068320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl792,993,330 - 92,996,025 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077033   ⟹   ENSRNOP00000068526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl793,192,354 - 93,502,571 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116381   ⟹   ENSRNOP00000091499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,658,112 - 87,161,740 (-)Ensembl
mRatBN7.2 Ensembl784,768,254 - 85,271,761 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000123693   ⟹   ENSRNOP00000112079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,658,112 - 87,207,686 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000136941   ⟹   ENSRNOP00000109486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,837,454 - 87,161,742 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148363   ⟹   ENSRNOP00000099141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,658,709 - 87,161,760 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151854   ⟹   ENSRNOP00000112767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,699,589 - 87,161,672 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167858   ⟹   ENSRNOP00000101327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,658,324 - 87,161,760 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168978   ⟹   ENSRNOP00000099079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,658,072 - 87,161,672 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170392   ⟹   ENSRNOP00000108609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl786,856,051 - 87,161,522 (-)Ensembl
RefSeq Acc Id: NM_001130562   ⟹   NP_001124034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8786,658,709 - 86,953,879 (-)NCBI
mRatBN7.2784,768,850 - 85,064,057 (-)NCBI
Rnor_6.0792,995,599 - 93,286,757 (-)NCBI
Rnor_5.0793,636,142 - 93,930,174 (-)NCBI
RGSC_v3.4789,785,050 - 90,090,875 (-)RGD
Celera781,608,279 - 81,901,215 (-)RGD
Sequence:
RefSeq Acc Id: NP_001124034   ⟸   NM_001130562
- Sequence:
Ensembl Acc Id: ENSRNOP00000068526   ⟸   ENSRNOT00000077033
Ensembl Acc Id: ENSRNOP00000063213   ⟸   ENSRNOT00000064877
Ensembl Acc Id: ENSRNOP00000068320   ⟸   ENSRNOT00000076327
Ensembl Acc Id: ENSRNOP00000068009   ⟸   ENSRNOT00000076080
Ensembl Acc Id: ENSRNOP00000091499   ⟸   ENSRNOT00000116381
Ensembl Acc Id: ENSRNOP00000112767   ⟸   ENSRNOT00000151854
Ensembl Acc Id: ENSRNOP00000101327   ⟸   ENSRNOT00000167858
Ensembl Acc Id: ENSRNOP00000108609   ⟸   ENSRNOT00000170392
Ensembl Acc Id: ENSRNOP00000099141   ⟸   ENSRNOT00000148363
Ensembl Acc Id: ENSRNOP00000109486   ⟸   ENSRNOT00000136941
Ensembl Acc Id: ENSRNOP00000099079   ⟸   ENSRNOT00000168978
Ensembl Acc Id: ENSRNOP00000112079   ⟸   ENSRNOT00000123693
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MKI3-F1-model_v2 AlphaFold A0A096MKI3 1-203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561402 AgrOrtholog
BioCyc Gene G2FUF-33407 BioCyc
Ensembl Genes ENSRNOG00000043390 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064877.5 UniProtKB/TrEMBL
  ENSRNOT00000076080.3 UniProtKB/TrEMBL
  ENSRNOT00000116381.2 UniProtKB/TrEMBL
  ENSRNOT00000123693.1 UniProtKB/TrEMBL
  ENSRNOT00000136941.1 UniProtKB/TrEMBL
  ENSRNOT00000148363.1 UniProtKB/TrEMBL
  ENSRNOT00000151854.1 UniProtKB/TrEMBL
  ENSRNOT00000167858.1 UniProtKB/TrEMBL
  ENSRNOT00000168978.1 UniProtKB/TrEMBL
  ENSRNOT00000170392.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro Aveugle-like_SAM_dom UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  SAM_domain-containing_protein UniProtKB/TrEMBL
KEGG Report rno:362910 UniProtKB/TrEMBL
NCBI Gene 362910 ENTREZGENE
PANTHER STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 10 UniProtKB/TrEMBL
  STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
Pfam SAM_2 UniProtKB/TrEMBL
PhenoGen Samd12 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000043390 RatGTEx
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A0A096MJ65_RAT UniProtKB/TrEMBL
  A0A8I6AFQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KX24_RAT UniProtKB/TrEMBL
  A0ABK0L0B1_RAT UniProtKB/TrEMBL
  A0ABK0L4M4_RAT UniProtKB/TrEMBL
  A0ABK0LW70_RAT UniProtKB/TrEMBL
  A0ABK0M3E7_RAT UniProtKB/TrEMBL
  A0ABK0M400_RAT UniProtKB/TrEMBL
  A0ABK0M444_RAT UniProtKB/TrEMBL
  A6HRF4 ENTREZGENE, UniProtKB/TrEMBL
  A6HRF5_RAT UniProtKB/TrEMBL
  M0R3J7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Samd12  sterile alpha motif domain containing 12  RGD1561402_predicted  similar to sterile alpha motif domain containing 12 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561402_predicted  similar to sterile alpha motif domain containing 12 (predicted)  LOC362910  similar to sterile alpha motif domain containing 12  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362910  similar to sterile alpha motif domain containing 12      Symbol and Name status set to provisional 70820 PROVISIONAL