Advanced Search (OLGA)

Gene: Kpna5 (karyopherin subunit alpha 5) Rattus norvegicus

Analyze

Symbol:

Kpna5

Name:

karyopherin subunit alpha 5

RGD ID:

1561324

Description:

Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Orthologous to human KPNA5 (karyopherin subunit alpha 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

importin subunit alpha-6; Ipoa6; karyopherin alpha 5; karyopherin alpha 5 (importin alpha 6); karyopherin subunit alpha-5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KPNA5 (karyopherin subunit alpha 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Kpna5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KPNA5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KPNA5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kpna5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KPNA5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KPNA5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kpna5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Kpna5 (karyopherin subunit alpha 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IDI2 (isopentenyl-diphosphate delta isomerase 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	KPNA5 (karyopherin subunit alpha 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kpna5 (karyopherin alpha 5 (importin alpha 6))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kpna5 (karyopherin alpha 5 (importin alpha 6))	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SRP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SRP1	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Kap-alpha1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Kap-alpha1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	31,365,647 - 31,430,793 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	31,365,656 - 31,430,792 (+)	Ensembl				GRCr8
mRatBN7.2	20	30,822,925 - 30,888,080 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	30,822,935 - 30,888,078 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	31,837,952 - 31,895,888 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	31,228,872 - 31,286,808 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	31,965,252 - 32,019,823 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	32,509,573 - 32,573,591 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	32,509,598 - 32,572,250 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	34,293,492 - 34,357,497 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	30,137,916 - 30,197,532 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	32,243,955 - 32,300,694 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

actinomycin D (ISO)

Aflatoxin B2 alpha (ISO)

aflatoxin M1 (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cyproterone acetate (EXP)

dexamethasone (EXP,ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

indometacin (ISO)

leflunomide (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

Nutlin-3 (ISO)

paracetamol (EXP)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

NLS-bearing protein import into nucleus (IBA)

protein import into nucleus (IEA)

protein transport (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

NLS-dependent protein nuclear import complex (IBA)

nucleus (IBA)

Molecular Function

nuclear import signal receptor activity (IBA,IEA)

nuclear localization sequence binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16906019

Genomics

Comparative Map Data

Kpna5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	31,365,647 - 31,430,793 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	31,365,656 - 31,430,792 (+)	Ensembl				GRCr8
mRatBN7.2	20	30,822,925 - 30,888,080 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	30,822,935 - 30,888,078 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	31,837,952 - 31,895,888 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	31,228,872 - 31,286,808 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	31,965,252 - 32,019,823 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	32,509,573 - 32,573,591 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	32,509,598 - 32,572,250 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	34,293,492 - 34,357,497 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	30,137,916 - 30,197,532 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	32,243,955 - 32,300,694 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

KPNA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	116,681,211 - 116,741,867 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	116,681,187 - 116,741,867 (+)	Ensembl			hg38	GRCh38
GRCh37	6	117,002,374 - 117,063,030 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	117,109,060 - 117,169,723 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	117,109,059 - 117,169,722	NCBI
Celera	6	117,745,428 - 117,806,105 (+)	NCBI		Celera
Cytogenetic Map	6	q22.1	NCBI
HuRef	6	114,581,937 - 114,642,615 (+)	NCBI		HuRef
CHM1_1	6	117,266,381 - 117,327,045 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	117,864,908 - 117,925,542 (+)	NCBI		T2T-CHM13v2.0

Kpna5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	48,303 - 102,447 (+)	Ensembl
ChiLan1.0	NW_004955436	48,880 - 102,447 (+)	NCBI	ChiLan1.0	ChiLan1.0

KPNA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	136,691,477 - 136,755,617 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	134,584,476 - 134,648,645 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	114,488,850 - 114,550,061 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	118,633,410 - 118,686,898 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	118,641,551 - 118,684,486 (+)	Ensembl			panPan2	panpan1.1

KPNA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	57,112,204 - 57,154,865 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	57,112,224 - 57,151,583 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	57,907,273 - 57,949,971 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	57,294,023 - 57,336,743 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	57,294,065 - 57,335,906 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	57,188,413 - 57,231,132 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	57,036,569 - 57,079,253 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	57,665,312 - 57,708,014 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kpna5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	107,833,199 - 107,893,835 (+)	NCBI		HiC_Itri_2

KPNA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	44,900,497 - 44,938,947 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	44,900,495 - 44,941,219 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	50,174,005 - 50,213,653 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KPNA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	57,080,862 - 57,134,653 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	57,080,084 - 57,134,154 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	29,414,984 - 29,468,748 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kpna5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624798	12,926,840 - 12,986,888 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624798	12,926,980 - 12,986,889 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kpna5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	28,704,925 - 28,764,811 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kpna5
375 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	56
Count of miRNA genes:	51
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000046268
Prediction methods:	Microtar, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_362222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY779029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046268 ⟹ ENSRNOP00000039571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	31,365,656 - 31,430,792 (+)	Ensembl
mRatBN7.2 Ensembl	20	30,822,935 - 30,888,024 (+)	Ensembl
Rnor_6.0 Ensembl	20	32,509,598 - 32,572,250 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097623 ⟹ ENSRNOP00000079511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	31,365,656 - 31,430,791 (+)	Ensembl
mRatBN7.2 Ensembl	20	30,822,977 - 30,888,078 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101839 ⟹ ENSRNOP00000096378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	31,365,656 - 31,430,791 (+)	Ensembl
mRatBN7.2 Ensembl	20	30,826,851 - 30,888,029 (+)	Ensembl

RefSeq Acc Id:

NM_001025113 ⟹ NP_001020284

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,365,685 - 31,430,793 (+)	NCBI
mRatBN7.2	20	30,822,969 - 30,888,080 (+)	NCBI
Rnor_6.0	20	32,513,673 - 32,569,932 (+)	NCBI
Rnor_5.0	20	34,293,492 - 34,357,497 (+)	NCBI
RGSC_v3.4	20	30,137,916 - 30,197,532 (+)	RGD
Celera	20	32,243,955 - 32,300,694 (+)	RGD

Sequence:

show sequence

ATGGCTAGTCCTGGTAAGGATAACTACAGAATGAAAAGTTACAAGAACAAAGCCTTAAATCCTC
AAGAGATGCGAAGACGAAGAGAAGAAGAAGGAATACAACTTCGAAAACAAAAAAGGGAGGAGCA
GTTGTTCAAACGCAGAAATGTCTCTTTGCCCAGAAATGATGACTGTATGCTGGAGAGCCCTATC
CAGGACCCAGATGTCAGCTCCACTGTACCCATTCCAGAGGAAGACATGATCACAGCAGATATGA
TTCAGATGATTTTCTCTAATAACGCTGAACAGCAACTGACTGCAACACAGAAATTTAGAAAACT
GCTTTCTAAAGAACCCAATCCACCAATAGATCAAGTTATACAGAAACCAGGAGTTGTACAGAGA
TTTGTGAAGTTTCTTGAAAGAAATGAAAATTGCACTTTACAATTCGAGGCTGCCTGGGCGTTAA
CTAATATAGCATCTGGAACTTTTCTGCATACCAAGGTAGTGATTGAAACCGGGGCTGTGCCAAT
TTTTATCAGACTTCTCACTTCAGAACATGAAGATGTACAGGAACAGGCGGTTTGGGCACTTGGT
AACATTGCTGGCGACAATGCAGAATGCAGGGATTTTGTTTTGAATTGTGAAATACTTCCACCTC
TTTTAGAGTTATTAACAAATTCAAACAGACTTACAACCACCAGAAATGCTGTATGGGCCCTCTC
AAATTTATGTAGAGGCAAAAACCCTCCTCCAAATTTTAGTAAGGTTTCACCTTGCTTAAATGTC
TTATCCCGGTTGTTGTTTAGCAGTGATCCAGATGTGTTAGCAGATGTGTGCTGGGCCCTTTCTT
ATCTCTCTGATGGACCCAATGATAAAATTCAAGTAGTCATTGATTCTGGAGTCTGCCGAAGATT
GGTGGAACTTTTGATGCACAATGACTATAAAGTTGTATCACCTGCATTAAGAGCAGTTGGTAAT
ATTGTAACTGGTGATGACATTCAAACACAGGTCATTTTGAATTGTTCTGCATTGCCCTGCCTTT
TACATTTGCTGGGAAGTCCAAAGGAGTCAGTTAGAAAGGAAGCCTGCTGGACCATTTCTAACAT
CACTGCGGGAAACAGAATGCAGATCCAGGCTGTCATAGATGGAAGTATTTTCCCTGTTTTGATT
GAGGTCCTCCAGAAAGCAGAATTTCGTACCAGAAAAGAAGCAGCGTGGGCTATAACCAATGCCA
CATCGGGAGGCGCTCCAGAGCAGATAAGGTATTTGGTAACCTTGGGCTGCATTAAACCACTTTG
TGACCTTTTGACTGTCATGGACTCCAAAATAGTTCAAGTTGCTTTGAATGGACTTGAAAATATT
TTACGCCTTGGAGAACGAGAATCTAAGCAGAATGGAGTGGGCATCAATCCATACTGTGCTCTCA
TTGAAGAAGCGTACGGCTTGGATAAAATAGAGTTTCTGCAAAGTCATGAAAACCAGGAAATTTA
CCAGAAGGCTTTTGATCTGATTGAACGCTATTTTGGTGTGGAGGAGGATGACCCTAGTCTCGTT
CCTCAGGTGGATGAGCAGCAGCGGCAGTTTCTCTTTCAGCAGTGCGAGGCACCAGGAGAAGGCT
TCCAGCTCTGACATGGGGAGGCTTCCATCTCTTACAGGGGGAGGCTTCCAGTTCTTACAGGGGG

hide sequence

RefSeq Acc Id:

XM_008772879 ⟹ XP_008771101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,369,852 - 31,430,793 (+)	NCBI
mRatBN7.2	20	30,827,132 - 30,888,080 (+)	NCBI
Rnor_6.0	20	32,515,315 - 32,572,371 (+)	NCBI

Sequence:

show sequence

AGAAATGTCTCTTTGCCCAGAAATGATGACTGTATGCTGGAGAGCCCTATCCAGGACCCAGATG
TCAGCTCCACTGTACCCATTCCAGAGACATGATCACAGCAGATATGATTCAGATGATTTTCTCT
AATAACGCTGAACAGCAACTGACTGCAACACAGAAATTTAGAAAACTGCTTTCTAAAGAACCCA
ATCCACCAATAGATCAAGTTATACAGAAACCAGGAGTTGTACAGAGATTTGTGAAGTTTCTTGA
AAGAAATGAAAATTGCACTTTACAATTCGAGGCTGCCTGGGCGTTAACTAATATAGCATCTGGA
ACTTTTCTGCATACCAAGGTAGTGATTGAAACCGGGGCTGTGCCAATTTTTATCAGACTTCTCA
CTTCAGAACATGAAGATGTACAGGAACAGGCGGTTTGGGCACTTGGTAACATTGCTGGCGACAA
TGCAGAATGCAGGGATTTTGTTTTGAATTGTGAAATACTTCCACCTCTTTTAGAGTTATTAACA
AATTCAAACAGACTTACAACCACCAGAAATGCTGTATGGGCCCTCTCAAATTTATGTAGAGGCA
AAAACCCTCCTCCAAATTTTAGTAAGGTTTCACCTTGCTTAAATGTCTTATCCCGGTTGTTGTT
TAGCAGTGATCCAGATGTGTTAGCAGATGTGTGCTGGGCCCTTTCTTATCTCTCTGATGGACCC
AATGATAAAATTCAAGTAGTCATTGATTCTGGAGTCTGCCGAAGATTGGTGGAACTTTTGATGC
ACAATGACTATAAAGTTGTATCACCTGCATTAAGAGCAGTTGGTAATATTGTAACTGGTGATGA
CATTCAAACACAGGTCATTTTGAATTGTTCTGCATTGCCCTGCCTTTTACATTTGCTGGGAAGT
CCAAAGGAGTCAGTTAGAAAGGAAGCCTGCTGGACCATTTCTAACATCACTGCGGGAAACAGAA
TGCAGATCCAGGCTGTCATAGATGGAAGTATTTTCCCTGTTTTGATTGAGGTCCTCCAGAAAGC
AGAATTTCGTACCAGAAAAGAAGCAGCGTGGGCTATAACCAATGCCACATCGGGAGGCGCTCCA
GAGCAGATAAGGTATTTGGTAACCTTGGGCTGCATTAAACCACTTTGTGACCTTTTGACTGTCA
TGGACTCCAAAATAGTTCAAGTTGCTTTGAATGGACTTGAAAATATTTTACGCCTTGGAGAACG
AGAATCTAAGCAGAATGGAGTGGGCATCAATCCATACTGTGCTCTCATTGAAGAAGCGTACGGC
TTGGATAAAATAGAGTTTCTGCAAAGTCATGAAAACCAGGAAATTTACCAGAAGGCTTTTGATC
TGATTGAACGCTATTTTGGTGTGGAGGAGGATGACCCTAGTCTCGTTCCTCAGGTGGATGAGCA
GCAGCGGCAGTTTCTCTTTCAGCAGTGCGAGGCACCAGGAGAAGGCTTCCAGCTCTGACATGGG
GAGGCTTCCATCTCTTACAGGGGGAGGCTTCCAGTTCTTACAGGGGGAGGCTTCCAGCTCTGAC
AGGGGCGGGGTGGCTCTCGGCTCTTCAACATGACCAGTACTGCTCAAAGTTTTATACGAGACAG
GAGAGACCATCGGATGCACTTTTAAAAGCAAATATGAAACAATACTTTCCGTTCAGATGCACTG
TTTCTTTATAGATTTTCTGTTGTTTTGCTGTAGCTGTATTTGTCTTCTGTTTGGACTTTTGCGT
TGTAAATATACATTATACAGACATTTTATTCAAGCTTGAAAAGGAGAACGTGGCGAATGCTAAC
GGTTCTGAACTTTCCCAGTGTTCTTGAAGACTGCACAGCAGCCGGGCCGTGAATGTTGATAATT
GAGTTTGTCAATAAGACTGACAGTGCCCATCTACTGAATCTACCTCTGTTTAGAATCAAATGTA
AGGACAAAAAGCTTCCGAAGCATGAAATCCTGTCAGACTGAGTTAGAGTGTGGTCATCTTTATT
ACTTCAGATTAAATCACTGTGCTGTATGGTCTATTTCACAAATAATGGCAACAGAAAACTTCGG
TTTTTTATGAAGCTGATGTATTTATGGATAAAAATGGCAGTTATGCAGAGAGAAGCTATTCATG
TTGATCACAATACTAACCTATAAAACAATAGTTTGTGTATTGTTCACATAAAATATTATTCTAG
TATATCTTATATTTTATCCAGAGAAGCTACCCTCTCTGGAATGTATTTATTTTCACTCTTCATT
TTAAAGAAGATCATGACAGTTGATCATGAATCTATATTGCTGCATACCTAAAACTAATTATTTC
CTCTGATTTTTCAGAAGATCTTGAAACATTTACTCTCTGTATAATAATGGACTGGAGTACTTGA
ATGGCAGAAGTATGCTGAGGAAATCACCTTGTTCTGTAGTAAATATTGTTAAGTGCATTTAGTG
TTTAAGTGAGCGGTACTGGTGAGAACTGCGGACGGTTACGTAATATGTCAAAGTCTGTGTTAGG
GACCTTGGGGACGCATGGCAGGTCACACGTGCTGCTGACTGAACTAAGGGGTGGACGGCCTTTG
CAGCAGCTCGGTCAGTCTCACTTACGCTTTGTGAGTTAACAGCAAAAAGTCTCTTGAAATGTGA
AAGTCTAAAGGTTTTGATAGAAAATTTAAATTTTTTTGCATATGTGTGTTATTTCCATAGAACT
GTGCTTGGTAGAATTTTCTAAGCAGATGTGGTATTGTTGAACTCAATTTTTTTTATTTATAGTT
ATATACAGGTTATGTATATATTTAGTTATTACTTAAGGATACTTACGTAAACTCTAAATTACAA
CTCTTGTAAGATGGGAACTAAAACAATTTTGATATGATTCATAGTTTATTCTATAAAGAAAGAT
TCATTTATGATAGCATTTATAATATTTCTGCTGAGAATCAGAGGCATGTGATATAGGAGTCATT
TCAAATAGTAGGACACTGTAAACTATATATCATGAATCTAAGCTTTTAGCAAGACAATTAAACT
CCACAACCATGAAATCTAGGTTTAAACGTTTTCCATAGCACCAACTGCATCTGTCAGTCTTTTT
ATACCATTAAGTAGAGGATTGTGTCTGCTCTTTTTATTATAATGGACGTTATAGAGTTAAGTAT
GTTATGTACATTCAAAGAAACAGGGTAGTGATATAAAAGTTACCAAATCGATGGGTGAGTTTAT
CAAATGAACACTGTTTTATGGTGCCAGCGTTTCTAAGTTAAGATGACAGGGTATTCGACAGTTT
GTAATCAGTTGTTGATCAGCATAATTCAAACTTAGCCAGCTGTGCCTGCTTTGAGGATGCAGTA
GTCACTATAGCAAGCCTCTAAGCCAAATCTTCCAAAAAGTAGTTCTTATAGAAGAAATTATATG
TGTGTGTAATATATATATATGTATATATATTATGTGTGTGTGTATATATATATATGTATATATA
TGTATGTGTGTATGTATATGTATGTATGTGTATGTATAAAATGTTTGCAGGCACATAGGATGAG
TGACCCGTCAAAGGAGATTTTAGAACTTATCAGTGGGACAAATGTTGAATTTCTAAATGCAGAA
CATGGTCATTCTTTGAATATTTAAGTACAAATATTATTTCTTGGATTAGATTTGAATGCAAAGG
CCACTTTAAAGCCTAGTTCCTTTTTGTCGGACTAAGAGCAAGAGCCAGCTGTGTAAGAGCACCA
CTAAAATGCCCCGGTGTTTGCCTCCATCATCACTGTCCCTGTGACACAACTCAGTAAGTTGCTT
TTTTAAGATTTGTGACACTTATATGTGATAAATACCTTGCCAAATAAAATAAATGTATGACATG
AATGCAAATACCAAGAAAAATCCTGAGTCTATTTAACTAAGTTTAATTGAATTTTCTTGAACTT
GAATTTCTACTGATTAAACTATGCAATCATGCTTATTGTTTTATAAACACATGA

hide sequence

RefSeq Acc Id:

XM_039098595 ⟹ XP_038954523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,365,647 - 31,413,720 (+)	NCBI
mRatBN7.2	20	30,822,925 - 30,871,013 (+)	NCBI

RefSeq Acc Id:

XR_005497215

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,365,648 - 31,430,793 (+)	NCBI
mRatBN7.2	20	30,822,925 - 30,888,080 (+)	NCBI

RefSeq Acc Id:

XR_010060651

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,365,647 - 31,430,793 (+)	NCBI

RefSeq Acc Id:

XR_362222

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	31,365,648 - 31,430,793 (+)	NCBI
mRatBN7.2	20	30,822,926 - 30,888,080 (+)	NCBI
Rnor_6.0	20	32,509,573 - 32,573,591 (+)	NCBI
Rnor_5.0	20	34,293,492 - 34,357,497 (+)	NCBI

Sequence:

show sequence

GCTTCTGGGAGCCGGCTTAGAGTCTGAGGAAAGGAGCGCTGGGAGCCGCCATCTTGGGTTGCTT
AGCTGCTCGCCGGGGACAGGCTGGAGTCGGAGAGTCCACCCTGAGCTGTCCGCAGCCGAGGCCA
CAGCGGGAGACTATAAGGAAGGGCTCGGGAGAGCACCGCGTGGATGGATTCAATGGCTAGTCCT
GGTAAGGATAACTACAGAATGAAAAGTTACAAGAACAAAGCCTTAAATCCTCAAGAGATGCGAA
GACGAAGAGAAGAAGAAGGAATACAACTTCGAAAACAAAAAAGGGAGGAGCAGTTGTTCAAACG
CAGAAATGTCTCTTTGCCCAGAAATGATGACTGTATGCTGGAGAGCCCTATCCAGGACCCAGAT
GTCAGCTCCACTGTACCCATTCCAGAGGAAGACATGATCACAGCAGATATGATTCAGATGATTT
TCTCTAATAACGCTGAACAGCAACTGACTGCAACACAGAAATTTAGAAAACTGCTTTCTAAAGA
ACCCAATCCACCAATAGATCAAGTTATACAGAAACCAGGAGTTGTACAGAGATTTGTGAAGTTT
CTTGAAAGAAATGAAAATTGCACTTTACAATTCGAGGCTGCCTGGGCGTTAACTAATATAGCAT
CTGGAACTTTTCTGCATACCAAGGTAGTGATTGAAACCGGGGCTGTGCCAATTTTTATCAGACT
TCTCACTTCAGAACATGAAGATGTACAGGAACAGGCGGTTTGGGCACTTGGTAACATTGCTGGC
GACAATGCAGAATGCAGGGATTTTGTTTTGAATTGTGAAATACTTCCACCTCTTTTAGAGTTAT
TAACAAATTCAAACAGACTTACAACCACCAGAAATGCTGTATGGGCCCTCTCAAATTTATGTAG
AGGCAAAAACCCTCCTCCAAATTTTAGTAAGGTTTCACCTTGCTTAAATGTCTTATCCCGGTTG
TTGTTTAGCAGTGATCCAGATGTGTTAGCAGATGTGTGCTGGGCCCTTTCTTATCTCTCTGATG
GACCCAATGATAAAATTCAAGTAGTCATTGATTCTGGAGTCTGCCGAAGATTGGTGGAACTTTT
GATGCACAATGACTATAAAGTTGTATCACCTGCATTAAGAGCAGTTGGTAATATTGTAACTGGT
GATGACATTCAAACACAGGTCATTTTGAATTGTTCTGCATTGCCCTGCCTTTTACATTTGCTGG
GAAGTCCAAAGGAGTCAGTTAGAAAGGAAGCCTGCTGGACCATTTCTAACATCACTGCGGGAAA
CAGAATGCAGATCCAGGCTGTCATAGATGGAAGTATTTTCCCTGTTTTGATTGAGGTCCTCCAG
AAAGCAGAATTTCGTACCAGAAAAGAAGCAGCGTGGGCTATAACCAATGCCACATCGGGAGGCG
CTCCAGAGCAGATAAGGTATTTGGTAACCTTGGGCTGCATTAAACCACTTTGTGACCTTTTGAC
TGTCATGGACTCCAAAATAGTTCAAGTTGCTTTGAATGGACTTGAAAATATTTTACGCCTTGGA
GAACGAGAATCTAAGCAGAATGGAGTGGGCATCAATCCATACTGTGCTCTCATTGAAGAAGCGT
ACGGCTTGGATAAAATAGAGTTTCTGCAAAGTCATGAAAACCAGGAAATTTACCAGAAGGCTTT
TGATCTGATTGAACGCTATTTTGGTGTGGAGGAGGATGACCCTAGTCTCGTTCCTCAGGTGGAT
GAGCAGCAGCGGCAGTTTCTCTTTCAGCAGTGCGAGGCACCAGGAGAAGGCTTCCAGCTCTGAC
ATGGGGAGGCTTCCATCTCTTACAGGGGGAGGCTTCCAGTTCTTACAGGGGGAGGCTTCCAGCT
CTGACAGGGGCGGGGTGGCTCTCGGCTCTTCAACATGACCAGTACTGCTCAAAGTTTTATACGA
GACAGGAGAGACCATCGGATGCACTTTTAAAAGCAAATATGAAACAATACTTTCCGTTCAGATG
CACTGTTTCTTTATAGATTTTCTGTTGTTTTGCTGTAGCTGTATTTGTCTTCTGTTTGGACTTT
TGCGTTGTAAATATACATTATACAGACATTTTATTCAAGCTTGAAAAGGAGAACGTGGCGAATG
CTAACGGTTCTGAACTTTCCCAGTGTTCTTGAAGACTGCACAGCAGCCGGGCCGTGAATGTTGA
TAATTGAGTTTGTCAATAAGACTGACAGTGCCCATCTACTGAATCTACCTCTGTTTAGAATCAA
ATGTAAGGACAAAAAGCTTCCGAAGCATGAAATCCTGTCAGACTGAGTTAGAGTGTGGTCATCT
TTATTACTTCAGATTAAATCACTGTGCTGTATGGTCTATTTCACAAATAATGGCAACAGAAAAC
TTCGGTTTTTTATGAAGCTGATGTATTTATGGATAAAAATGGCAGTTATGCAGAGAGAAGCTAT
TCATGTTGATCACAATACTAACCTATAAAACAATAGTTTGTGTATTGTTCACATAAAATATTAT
TCTAGTATATCTTATATTTTATCCAGAGAAGCTACCCTCTCTGGAATGTATTTATTTTCACTCT
TCATTTTAAAGAAGATCATGACAGTTGATCATGAATCTATATTGCTGCATACCTAAAACTAATT
ATTTCCTCTGATTTTTCAGAAGATCTTGAAACATTTACTCTCTGTATAATAATGGACTGGAGTA
CTTGAATGGCAGAAGTATGCTGAGGAAATCACCTTGTTCTGTAGTAAATATTGTTAAGTGCATT
TAGTGTTTAAGTGAGCGGTACTGGTGAGAACTGCGGACGGTTACGTAATATGTCAAAGTCTGTG
TTAGGGACCTTGGGGACGCATGGCAGGTCACACGTGCTGCTGACTGAACTAAGGGGTGGACGGC
CTTTGCAGCAGCTCGGTCAGTCTCACTTACGCTTTGTGAGTTAACAGCAAAAAGTCTCTTGAAA
TGTGAAAGTCTAAAGGTTTTGATAGAAAATTTAAATTTTTTTGCATATGTGTGTTATTTCCATA
GAACTGTGCTTGGTAGAATTTTCTAAGCAGATGTGGTATTGTTGAACTCAATTTTTTTTATTTA
TAGTTATATACAGGTTATGTATATATTTAGTTATTACTTAAGGATACTTACGTAAACTCTAAAT
TACAACTCTTGTAAGATGGGAACTAAAACAATTTTGATATGATTCATAGTTTATTCTATAAAGA
AAGATTCATTTATGATAGCATTTATAATATTTCTGCTGAGAATCAGAGGCATGTGATATAGGAG
TCATTTCAAATAGTAGGACACTGTAAACTATATATCATGAATCTAAGCTTTTAGCAAGACAATT
AAACTCCACAACCATGAAATCTAGGTTTAAACGTTTTCCATAGCACCAACTGCATCTGTCAGTC
TTTTTATACCATTAAGTAGAGGATTGTGTCTGCTCTTTTTATTATAATGGACGTTATAGAGTTA
AGTATGTTATGTACATTCAAAGAAACAGGGTAGTGATATAAAAGTTACCAAATCGATGGGTGAG
TTTATCAAATGAACACTGTTTTATGGTGCCAGCGTTTCTAAGTTAAGATGACAGGGTATTCGAC
AGTTTGTAATCAGTTGTTGATCAGCATAATTCAAACTTAGCCAGCTGTGCCTGCTTTGAGGATG
CAGTAGTCACTATAGCAAGCCTCTAAGCCAAATCTTCCAAAAAGTAGTTCTTATAGAAGAAATT
ATATGTGTGTGTAATATATATATATGTATATATATTATGTGTGTGTGTATATATATATATGTAT
ATATATGTATGTGTGTATGTATATGTATGTATGTGTATGTATAAAATGTTTGCAGGCACATAGG
ATGAGTGACCCGTCAAAGGAGATTTTAGAACTTATCAGTGGGACAAATGTTGAATTTCTAAATG
CAGAACATGGTCATTCTTTGAATATTTAAGTACAAATATTATTTCTTGGATTAGATTTGAATGC
AAAGGCCACTTTAAAGCCTAGTTCCTTTTTGTCGGACTAAGAGCAAGAGCCAGCTGTGTAAGAG
CACCACTAAAATGCCCCGGTGTTTGCCTCCATCATCACTGTCCCTGTGACACAACTCAGAAAAC
AAGATGGATGAGACAAGACGAGGCCAGATGAGGCGAGATGTGGTGATTTTCACATAACTAAATA
AACAGACATTTGAACATTATGCAAGATTATGAAATGTTACACTCTACTAAACACAATAAAATAC
TATTTTACAATTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020284	(Get FASTA)	NCBI Sequence Viewer
	XP_008771101	(Get FASTA)	NCBI Sequence Viewer
	XP_038954523	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAX07456	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000079511
	ENSRNOP00000079511.1
GenBank Protein	Q56R16	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020284 ⟸ NM_001025113

- UniProtKB:

Q56R16 (UniProtKB/Swiss-Prot), A0A0H2UHW5 (UniProtKB/Swiss-Prot), A0A8I6APC5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPGKDNYRMKSYKNKALNPQEMRRRREEEGIQLRKQKREEQLFKRRNVSLPRNDDCMLESPI
QDPDVSSTVPIPEEDMITADMIQMIFSNNAEQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQR
FVKFLERNENCTLQFEAAWALTNIASGTFLHTKVVIETGAVPIFIRLLTSEHEDVQEQAVWALG
NIAGDNAECRDFVLNCEILPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNV
LSRLLFSSDPDVLADVCWALSYLSDGPNDKIQVVIDSGVCRRLVELLMHNDYKVVSPALRAVGN
IVTGDDIQTQVILNCSALPCLLHLLGSPKESVRKEACWTISNITAGNRMQIQAVIDGSIFPVLI
EVLQKAEFRTRKEAAWAITNATSGGAPEQIRYLVTLGCIKPLCDLLTVMDSKIVQVALNGLENI
LRLGERESKQNGVGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIERYFGVEEDDPSLV
PQVDEQQRQFLFQQCEAPGEGFQL

hide sequence

RefSeq Acc Id:	XP_008771101 ⟸ XM_008772879
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6APC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MITADMIQMIFSNNAEQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQRFVKFLERNENCTLQF EAAWALTNIASGTFLHTKVVIETGAVPIFIRLLTSEHEDVQEQAVWALGNIAGDNAECRDFVLN CEILPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNVLSRLLFSSDPDVLAD VCWALSYLSDGPNDKIQVVIDSGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC SALPCLLHLLGSPKESVRKEACWTISNITAGNRMQIQAVIDGSIFPVLIEVLQKAEFRTRKEAA WAITNATSGGAPEQIRYLVTLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGERESKQNGVGI NPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIERYFGVEEDDPSLVPQVDEQQRQFLFQQC EAPGEGFQL hide sequence

Ensembl Acc Id:

ENSRNOP00000039571 ⟸ ENSRNOT00000046268

RefSeq Acc Id:	XP_038954523 ⟸ XM_039098595
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000079511 ⟸ ENSRNOT00000097623

Ensembl Acc Id:

ENSRNOP00000096378 ⟸ ENSRNOT00000101839

Protein Domains

IBB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q56R16-F1-model_v2	AlphaFold	Q56R16	1-539	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701620

Promoter ID:

EPDNEW_R12144

Type:

initiation region

Name:

Kpna5_1

Description:

karyopherin subunit alpha 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	32,509,620 - 32,509,680	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561324	AgrOrtholog
BioCyc Gene	G2FUF-3666	BioCyc
Ensembl Genes	ENSRNOG00000030109	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000046268	ENTREZGENE
	ENSRNOT00000097623	ENTREZGENE
	ENSRNOT00000097623.1	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.5.690	UniProtKB/Swiss-Prot
	1.25.10.10	UniProtKB/Swiss-Prot
InterPro	ARM-like	UniProtKB/Swiss-Prot
	ARM-type_fold	UniProtKB/Swiss-Prot
	Arm_3	UniProtKB/Swiss-Prot
	Armadillo	UniProtKB/Swiss-Prot
	Importin-a_IBB	UniProtKB/Swiss-Prot
	Importin-a_IBB_sf	UniProtKB/Swiss-Prot
	Importing_su_alpha	UniProtKB/Swiss-Prot
KEGG Report	rno:294392	UniProtKB/Swiss-Prot
NCBI Gene	294392	ENTREZGENE
PANTHER	IMPORTIN ALPHA	UniProtKB/Swiss-Prot
Pfam	Arm	UniProtKB/Swiss-Prot
	Arm_3	UniProtKB/Swiss-Prot
	IBB	UniProtKB/Swiss-Prot
PhenoGen	Kpna5	PhenoGen
PIRSF	Importin_alpha	UniProtKB/Swiss-Prot
PROSITE	ARM_REPEAT	UniProtKB/Swiss-Prot
	IBB	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000030109	RatGTEx
SMART	ARM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHW5	ENTREZGENE
	A0A8I6APC5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QJC1_RAT	UniProtKB/TrEMBL
	IMA6_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A0A0H2UHW5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Kpna5	karyopherin subunit alpha 5	Kpna5	karyopherin alpha 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-27	Kpna5	karyopherin alpha 5	Kpna5	karyopherin alpha 5 (importin alpha 6)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Kpna5	karyopherin alpha 5 (importin alpha 6)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message