Advanced Search (OLGA)

Gene: Ahctf1 (AT hook containing transcription factor 1) Rattus norvegicus

Analyze

Symbol:

Ahctf1

Name:

AT hook containing transcription factor 1

RGD ID:

1561291

Description:

Predicted to be involved in nuclear pore complex assembly and regulation of cytokinesis. Predicted to be located in chromosome; cytoplasm; and nucleus. Predicted to be part of nuclear pore outer ring. Orthologous to human AHCTF1 (AT-hook containing transcription factor 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; aristolochic acid A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ELYS; LOC360886; RGD1561291; similar to transcription factor ELYS; transcription factor ELYS-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AHCTF1 (AT-hook containing transcription factor 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ahctf1 (AT hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ahctf1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AHCTF1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AHCTF1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ahctf1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AHCTF1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AHCTF1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ahctf1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ahctf1 (AT-hook containing transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ahctf1 (AT hook containing transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	AHCTF1 (AT-hook containing transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ahctf1 (AT hook containing transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14215	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14215	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mel-28	Alliance	DIOPT (InParanoid\|OMA)
Caenorhabditis elegans (roundworm):	mel-28	Alliance	DIOPT (OMA\|OrthoFinder\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ahctf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ahctf1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	94,013,894 - 94,068,348 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	94,014,469 - 94,068,058 (-)	Ensembl				GRCr8
mRatBN7.2	13	91,481,936 - 91,536,391 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	91,481,936 - 91,536,391 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	93,987,131 - 94,041,584 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	95,387,293 - 95,441,746 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	92,561,966 - 92,616,421 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	98,023,528 - 98,079,138 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	98,023,430 - 98,078,946 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	103,033,087 - 103,088,505 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	95,432,560 - 95,483,323 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	91,033,173 - 91,087,225 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

strabismus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

aristolochic acid A (EXP,ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cyproconazole (ISO)

Dibutyl phosphate (ISO)

dimethyl sulfoxide (ISO)

endosulfan (ISO)

epoxiconazole (ISO)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

geraniol (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

levonorgestrel (ISO)

methotrexate (ISO)

ozone (EXP,ISO)

paracetamol (ISO)

phenobarbital (ISO)

pinostrobin (ISO)

probenecid (EXP)

propiconazole (EXP,ISO)

resveratrol (EXP,ISO)

rotenone (EXP)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (ISO)

theophylline (ISO)

thiram (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

triadimefon (EXP)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nuclear pore complex assembly (ISO)

regulation of cytokinesis (ISO)

Cellular Component

chromatin (ISO)

cytoplasm (IEA,ISO)

kinetochore (ISO)

nuclear body (ISO)

nuclear envelope (ISO)

nuclear matrix (IEA,ISO)

nuclear membrane (ISO)

nuclear pore (ISO)

nuclear pore outer ring (ISO)

nucleoplasm (ISO)

nucleus (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11952839	PMID:15632090	PMID:17098863	PMID:19056867	PMID:30361391

Genomics

Comparative Map Data

Ahctf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	94,013,894 - 94,068,348 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	94,014,469 - 94,068,058 (-)	Ensembl				GRCr8
mRatBN7.2	13	91,481,936 - 91,536,391 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	91,481,936 - 91,536,391 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	93,987,131 - 94,041,584 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	95,387,293 - 95,441,746 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	92,561,966 - 92,616,421 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	98,023,528 - 98,079,138 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	98,023,430 - 98,078,946 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	103,033,087 - 103,088,505 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	95,432,560 - 95,483,323 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	91,033,173 - 91,087,225 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

AHCTF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	246,839,098 - 246,931,948 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	246,839,098 - 246,932,063 (-)	Ensembl			hg38	GRCh38
GRCh37	1	247,002,400 - 247,095,250 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	245,069,023 - 245,148,302 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	220,298,863 - 220,391,306 (-)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	217,396,102 - 217,488,405 (-)	NCBI		HuRef
CHM1_1	1	248,274,635 - 248,367,021 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	246,270,496 - 246,363,018 (-)	NCBI		T2T-CHM13v2.0

Ahctf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	179,572,469 - 179,631,580 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	179,572,459 - 179,631,245 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	179,744,904 - 179,804,015 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	179,744,894 - 179,803,680 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	181,675,035 - 181,734,146 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	181,582,766 - 181,640,340 (-)	NCBI		MGSCv36	mm8
Celera	1	186,809,078 - 186,868,175 (-)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	83.62	NCBI

Ahctf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	9,688,749 - 9,744,998 (-)	Ensembl
ChiLan1.0	NW_004955406	9,687,237 - 9,754,426 (-)	NCBI	ChiLan1.0	ChiLan1.0

AHCTF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	2,124,091 - 2,221,900 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	2,397,849 - 2,497,083 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	222,469,006 - 222,563,635 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	227,934,111 - 228,026,820 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	227,935,557 - 228,026,795 (-)	Ensembl			panPan2	panpan1.1

AHCTF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	37,550,045 - 37,627,428 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	37,543,496 - 37,627,131 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	37,033,475 - 37,110,578 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	37,383,897 - 37,461,128 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	37,385,201 - 37,461,599 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	37,224,058 - 37,301,251 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	37,231,362 - 37,308,602 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	37,500,950 - 37,578,194 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ahctf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	50,537,666 - 50,604,348 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	4,142,566 - 4,209,791 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	4,143,002 - 4,209,689 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AHCTF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	15,042,275 - 15,132,326 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	15,042,168 - 15,121,885 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	17,361,477 - 17,440,847 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AHCTF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	83,889,934 - 83,978,965 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	83,892,508 - 83,978,935 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	86,190,965 - 86,287,548 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ahctf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	12,795,243 - 12,863,813 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	12,785,656 - 12,863,797 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ahctf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	58,073,000 - 58,127,555 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ahctf1
412 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	13
Count of miRNA genes:	12
Interacting mature miRNAs:	13
Transcripts:	ENSRNOT00000035875
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH138593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	91,488,995 - 91,489,200 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	98,030,588 - 98,030,792	NCBI	Rnor6.0
Rnor_5.0	13	103,040,147 - 103,040,351	UniSTS	Rnor5.0
RGSC_v3.4	13	95,439,809 - 95,440,013	UniSTS	RGSC3.4
Celera	13	91,040,232 - 91,040,436	UniSTS
RH 3.4 Map	13	605.6	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035875 ⟹ ENSRNOP00000037261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	94,016,210 - 94,068,058 (-)	Ensembl
mRatBN7.2 Ensembl	13	91,481,936 - 91,536,391 (-)	Ensembl
Rnor_6.0 Ensembl	13	98,023,528 - 98,078,946 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078034 ⟹ ENSRNOP00000071711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	94,014,469 - 94,068,058 (-)	Ensembl
mRatBN7.2 Ensembl	13	91,481,936 - 91,536,012 (-)	Ensembl
Rnor_6.0 Ensembl	13	98,023,430 - 98,078,555 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113914 ⟹ ENSRNOP00000085009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	91,481,936 - 91,535,760 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115293 ⟹ ENSRNOP00000078793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	94,014,469 - 94,068,058 (-)	Ensembl
mRatBN7.2 Ensembl	13	91,481,936 - 91,536,012 (-)	Ensembl

RefSeq Acc Id:

NM_001271270 ⟹ NP_001258199

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	94,013,894 - 94,068,348 (-)	NCBI
mRatBN7.2	13	91,481,936 - 91,536,391 (-)	NCBI
Rnor_6.0	13	98,023,528 - 98,078,946 (-)	NCBI
Rnor_5.0	13	103,033,087 - 103,088,505 (-)	NCBI
Celera	13	91,033,173 - 91,087,225 (-)	NCBI

Sequence:

show sequence

GCGATCCTTCCCTCGGCGGAGAGGTTGTGTGTGTGGGGTTCGGGCAGTGCGCCCGGGGTACTGC
GCAGAGCGCGGCCCGAGTGGTGCCAGCCCAGTAAATCGAGTCGCCAGCGGGGAGGACGCGGCGC
GGGCGGCGGGACGAGTTCGAAGCCGGGATTGGGCGAAGGCGCTGCCAGGGCCTGAGGGGCCGGC
GAGAGGCTGAGCGAGACGCGGCTTTCGCAGGCGGGGGCGCGCGCCCGGCTGTGTCTCCCGGGAG
ATGCTGTGACGGTCTGCACGGAAGCAGCTACGCCGCGGCCCTCGGCGGCCTGGCCCGCGGGCTC
AGTGGAAGCATGCAAGACTTGACAGCTCAAGTGACTAGTGATCTCCTGCAGTTCCCAGAAGTGA
CTATTGAAGCTCTTGGAGAAGATGAAATAACGTTAGAATCTGTGCTTCGTGGGAAATTTGCTGC
CGGGAAAAATGGATTGGCTTGCTTAGCTTGTGGTCCACAACTTGAAGTCGTAAACTCCCTAACA
GGAGAGCGGCTGTCTGCATATAGATTCAGTGGAGTAAATGAACAGCCTCCTGTAGTTCTTGCAG
TGAAAGAATTCTCTTGGCATAAGAGAACTGGATTGCTAATAGGATTAGAAGAAGCAGATGGGAG
TGTTCTTTGCCTTTATGACCTTGGTATATCCAGAGTGGTCAAAGCAGTTGTTCTTCCTGGAAGG
GTAACAGCTATCGAGCCTATAATTAACCATGGAGGAGCCAGTGCAAGTACCCAGCACTTACACC
CAAGCCTTCGATGGCTTTTTGGTGTGGCAGCTGTGGTAACTGATGTTGGACAGATCCTTCTTAT
TGATCTCTGTTTGGATGACTTGTCATGCAGTCAAAATGAAGTAGAGGCATCAGATCTTGAAGTT
ATCACTGGTATTCCAGCTGAAGTACCACACATCAGAGAGAGTGTGATGAGAGAGGGGCGCCACC
TGTGTTTCCAGTTAGTTAGCCCATCGGGAGTAGCCATTTCTACCCTCAGTTACATTAACAGGAC
AAATCAGCTTGCTGTCGGTTTTGCTGACGGCTACTTGGCACTTTGGAACATGAAAAGCATGAAA
AGAGAATACTATACACAATTGGAAGGTGGAAGGGTTCCTGTCTATGCAGTTGTTTTTCAAGAGC
CTGAGAATGATCCTCGTAACTGCTGTTATTTATGGGCTGTGCAATCCACACAAGAGAGTGAAGG
GGATGTTGTGAGTTTGCATCTGCTTCAGCTGGCTTTTGGTGATAGAAAATGTTTGGCATCAGGG
CAGATCTTATATGAGGGATTAGAATACTGCGAAGAAAGATATACACTGGATCTATCAGGTGGCA
TGTTCCCCTTAAGGGGACAGACTAGCAATACCAAATTGTTGGGCTGCCAGAGTATAGAGCGATT
TCCGTCTCATGGTGACAGAGAAGAAAGCATGAGAGAAGCTCTGTCCCCTGACACTAGCGTTTCT
GTCTTTACCTGGCAAGTGAACATATATGGACAGGGAGAGCCTTCTGTGTATTTAGGGCTTTTTG
ACATAAATCGGTGGTATCATGCACAAATGCCTGATTCTTTAAGGTCTGGGGAATCTCTGCATAA
TTGCTCTTACTTCGCATTGTGGTCATTGGAGTCGGTTGTGAGTAGGACTTCTCCACATCACATC
CTGGACATACTCGTACACGAGAGAAGTTTAAGTCGAGGGGTTCCTCCCTCCTATCCACCTCCAG
AACAGTTTTTTAACCCAAGTACTTTTAACTTTGATGCGACTTGCTTGTTAAACTCTGGAGTTAT
CCATGTAACTTGTACTGGATTTCAGAAGGAGACTTTGACATTTTTAAAGAAATCAGGACCAACT
CTTAATGAAGTCATTCCCGATAGTTACAATCGATGTCTTGTTGCCGGTCTCCTCTCACCAAGGC
TTATTGATATTCAGCCTTCCAGTTTAAGTCAAGAAGAACAATTAGAAGCTATATTGTCAGCAGC
AATTCAGACAAGTTCCTTGGGACTTTTGACTGGTTACATCAGAACATGGATAATAGAAGAACAA
CCAAATTCTGCTGCTAATCTACGGTTTGTTCTTGAGTGGACATGGAATAAGGTGATCCTCACAA
AAGAAGACTTTGACAGGCTTTGTGTGCCGTTGTTTGACGGTTCCTGTCGCTTCATCGACCCACA
GACCATTCAGTCCATCCAGCAGTGTCATTTACTGCTTAGCAACCTCAGTACAGTCTTAAGCTGT
TTCGCAATGGAGGCCCAGGGTATCACTGAAAGAGGACTTGTGGACTTGAACAATAAGCATATGG
TTACCCAGCTTATCTGTCAGTATGCACAAATGGTTCTGTGGTTCTGTCACTCTGGGCTTTTACC
TGAAGGCTTAGATGATACTCTGCAGCTGTCAAGACTACGCTACAACTACCCTGTAATTCAGAAC
TACTATACCAGTCGTCGGCAGAAGTGTGAACGTTCACCCAGAGGGAAGTGGAGCCGAGACTGCT
TGCTGATCGATGGACTGGTCTCTCAACTAGGAGATGAAGTTGAGAAGCTGTGGAAGCGGGATGA
AGGTGGCACAGGAAAATACCCTCCTGCTAGCATCCATGCATTACTTGATATATATTTATTAGAC
AACATTAGTGAAGCAAGCAAACATGCTATTACCATTTATTTGCTGCTTGATATTATGTATTCCT
TTCCCAATAAAACGGATACCCCCATTGAATCTTTCCCAACTGCTTTTGCTATTTCTTGGGGCCA
AGTTAAACTAGTTCAAGGATTTTGGCTGCTAGATCATAATGATTATGAGAATGGTTTAGACCTT
CTGTTTCACCCAGTTACTGCAAAACCTGCATCGTGGCAGCATTCAAAGATAATTGAAGCCTTTA
TGAGTCAGGGAGAGCACAAACAGGCTCTCCGCTATCTTCAGACAATGAAGCCAACAGTGTCCAG
TAGCAGTGATGTTCTCCTTCACCTCTCTGTTCTGCTTTTTAATAGATGCATGGTTGAGGCGTGG
AACTTACTGCGACAGAACTCAAACACAGTAAATATAGAGGAATTGCTGAAGCATGCTTATGAAG
TTTGTCAGGAGATGGGCTTAATGGAGGATTTACTGAAGCTACCGTTTACAAACACTGAGCAGGA
ATGTTTAGTGAATTTTTTACAATCCAGTTCCAGTGTTCAGAATCATGAATTCCTTCTAGTTCAC
CATTTACAGCGTGCCAATTATATTTCTGCCTTGAAACTGAACCAGACTCTGAAGAATAATCTCA
CGAGTGATCGTGACCCTCGATTGCGGGAGAGATCAGTGACTCGAAATTCTATATTAGACCAGTA
TGGGAAAATCCTACCTAGAGTCCAAAGAAAGTTAGCTGTTGAGCGAGCCAAGCCTTACCATCTG
TCAACATCGTCAGTTTTTCAGGAAGTTTCTAGACCCAAACCATTATCAGCATTTCCAAAGAAAG
CTCTAACTGGAACAGTGATAACGCGGTCTACATTCATCAGCAACGTGCTATCTAAAATTGGAGA
GGTGTGGGCAAGCCATGAGCCCAGAAACGGCATCTCACTTTTCAACAGTCCTAAAACAGAGCAA
CCATCTCCTGTAGTGCACTCTTTCCCACATCCAGAGCTTCCTGAGGCATTTGTTGGAACACCAA
TTTCAAATCCATCCCAGAGAATTTCTAGATTACTGGATTTGGTTGTTCATCCTATCCCCCAACC
CTCCCAACGTTTGGAGTTTATTCAGCAAAGTCCCACAAGATCTCCTTTGTGTCTGCTGTCCAGT
TCATTACCATTAAGTTCACAGTTAAAAAGGCCACATCAGCAAGCCTCCAGGCCTTCAGAATTAC
TTTTACTTGAAACTCCTCTTATAGTTAAGAAAGCTAAGTCTTTGGCTCTCTCAGCTACATCTTC
TGGATTTGCCGAGTTTACTCCTCCATCCATCCTTAGGTCTGGTCTTCGAACAACATCTTTAGCT
TCTCCCTCTCAGTCACCTGGAAGATCTCTCACTCCGCCTTTCAGACTTAAAGAAACTAGGATTT
CATTCATGGAAGAAGGCATGAACACACACTGGACTGATACAGCCACAGATGACCGAAATGCAAA
AGCGTTTGTTAGTACATCTTTCCATAAATGTGGACTTCCAGCAGAAACTGAATGGATGAAGACC
AATGATAAAAATACATATTTTCCTTTGGATGTCCCTGCAAAGGTTCCTCAGAAAGTGGTTGCAG
AATCGCTGGATACCCATTCTCCTCGAAGTCTAGAGAAACTGGATGTGAGCAAAGACAGCACTGT
TTCCAGCAGGTCAGACCAGACCTTAGAGTATCATGATGCACCATCACCAGAGGACTTGGAAGGG
GGTGTTTTTGTGTCCCCCAAGCCAGCGAGCTCTTCCACTGAACTAACTACTAATTCAATGGTAC
AAACCGAGAAGGATAATGATAAAAATTTGTTTAAGTCAGAAGGTACTCCTTCAGCCATGGAGAA
ACAGATAGGCACCATAGAAGCTTCGGTGGAAGCATTTTCAGAATTCAGTCACTTAGACCCTGTT
GAAAGAGCTGAAGCTTCTCTTGGTGTGTCATCTGTCCGTGAAGGGGAAACCTCCACTTCAAAAT
CCAAGACATCGGTTCTGGATGGAATAGTGTCTATTGAGAGCCGAACTTCCATACCTATAGCAGA
CCACAATGAATTTGTGGCCAACAAGGTAGAAGATGTTGAAAGCTCTGAGTCTACCACCTCCAAG
TGCCCTGTTACCTCTGAACGTAGCCTTGACAAAGAACTAACATTAAATTTAAAAGGAGATGAAA
TGGAAGCTGTTGTACCAAAAGAGAGCGTTGGCTTACCAGAAGAAAGACCTCAGACTTCTGCTGG
TCCTTCTGATACTCAAGAAATTCATCTAATTGGATGTGAAAAACTTGAAGTTCAAAATTCAGAA
GAGGTGGCCAAGAGTCTTTCGTTTCCCGAGTTGTGTCCCTTAGGAGCACACAGACCTCAGTATA
ATTTCGATGTCATTGAGCAGCAGTTTCGTGACTTGCCCGATGATAAAGACTCTGCTGAATGTGA
TGTCGCTGAAGTGGATGGGGAGCTCTTTGTGGCCCAGAGCAACTTTAGCTTGATTTTAGAAGGC
GAAGAAGGAGAGGTTGAGGCAAGTGACTCTAATGTGTTACCGAAAGTGACCAACATAGCAACCA
AGGAAAAACCTGTGTCCTGCGAGGAACCTGATAATGAAGGACATGTTACAGATTTGCCATCTGC
TGTGACTGGTGACCAAGAGTCTCACAAGGTAGAGACTTTACCATATGTGCCTGAACCAGTTAAA
GTGGCAATTGCAGAAAATTTGTTGGATGTAATTAAAGACACACGAAGTAAAGAAGCAACTCACG
TGGCAGCCGTTGAGGATGTCGATGAGGACAGAGCAGTAATGATCCCCAAGGCTGCACATCCGTC
CAGGCTGACGAACTCCACACCGAAGACTGTTAAGGAAAGACGCGCCGAGACCGTAAGTGCCAGC
CAGGGTGACGACAGCATAGCTCCTAGAACTCTCACAAGAAGGCAGCGTGCCCTAAGCCTGAATG
TCACTTCAGAACAAGAGCCCTCAGCAGCTGCTACTCCTCAGAAGAAAACTAGAAAAGTAAAAGA
AACTCGTGAGTTTTCTGAAAGTACCTGTTCTGACGTAAAAGTAGCACCTGAGAACCAGCTGACA
GCTCCCAGTCCTTCCCCTTCCAGGAGAGGAAGGAAGAAAAAGGACCTTGGCCAAGGTCCACTGG
CAACCTCTGGTGCTGTGGAGGAGCCCCAGGCGACACCAGAAAGACTGAGGCTGAGAGTGCAGCC
ACCTGAGCCAGCAGCTGAGGAAACACCTTCTAGAGCAAAAGCCAAGCTTTCATCTGCTAGGAAG
GGGACTCCTAGAAGACTTAGGAAATCTATAGAAGATGGGCCAAGTGCAGACATTGTAAATGAGG
TCAGAGGCAGGAAAGCAGCCGGTCATGGCAGGACTGTCAGAGAGCTGAGGAGTGCCAGTGTAGA
GGATACTCAAAAGATGGAGTATGAACAAGATGAGGAACGCGGTGACCAGCAACTGCCTCTAAAA
CGAAAAAGGGTCAGAGAGAGAGAAGATAGTGTGTCCGGTGTGACAGAAGAGCCTAAGCTTGACT
CATCCCAGTTAACTCTTCAGGTGGGACTTGATGTACCTGCCACCCCTAGGAAACGTGGTAGAAG
GCCCAAGAGGGTAGTTCCCTTAGGAGCTGATGGTACCACACCAGGTAAGGAACAGACAAGCCCC
CAGAAGGAAGGTCCAGTTGTCCGGAGGTCTACACGGAACACCCCAGCTAGAAATGTGAGTACTT
TAGAAAAACCCATTTTAGTGCCAAATAAGGAAGCTGCTACAGTGATGACGTCTAAGAAAAAACC
TACGAAGAAGTCTGCAGATGGAAGCCCAAAAGGTCCATTTCCAGCAGTATCAGACTTGGCGGAT
GAAGCAGCCCACCGAGAGTCCACTGACCAAGGAGTGCTCACCAGTGCTGCGTTCACTACGCCCT
CCTGGAGCACAAGGACTAGGTCTAGAAGGACCATGTTGTTAACGGACATTTCTGAGCCCCAAAC
TGAGCCTTTGCTTTCCTCCCCTTCATTGAAGGTGCCAAAGAAAGAGACAAAAGCTAAAAACATG
GAGGCCGCTGCCCAGCTGAAAGAATTGGTGTCAGATATATCTTCTCGGTTTGTGGTTTCCCCTC
CTGCCTTGAGAACCAGGCAGAAAAGTACATCCAATGCTTCCAAGCTTCTAGGTGAATTGGAGAG
TAACCCTAAACCAGTAGAAATCATAGAACAAAAACCAAAAAGAAGCAGGACTGTGAAGACAAAA
GTGAGCAGAAACACAGGAAAAGGAAGTTCTTGGTCACCTCCCCCTATAGAAATTAAACTGATCT
CTCCCTTGGCAAGTCCGGTGGATGAAATAAAGGTCAGCAAGCCAAGAAAGACTGCAGAAGTAGC
AGGAAAAACTCTTGGAAGGGGCAGAAAGAAGCCATCTTCTTTTCCAAAGCAAATTTTACGCAGG
AAAATGCTGTAATTTTTAGCCCAAGATTTTAACATGCACCTGTTTGTAAAAGTCAACAGTATTT
GTGTGGATTATTAAAAGTCACCCAATTTGGATGGAAATACTTTATATAAATTGTACAATTTTGT
AAGCAAGTAAATAAGTAACTCCATGTGGAGTGCAGTTCTAGTCCAGGCGTTTTATAATACTTGA
TACGTTTATATAATATGTAAATATGACTTATCATTGGGATGTTAAATAAACTGTTGTAAAGTAC
ACACTGTGTGTCTGTTAGATTTTTGAGAGGGGATTTCTGTTTTAATTGTAATTTTATATGCTAC
TAGACATTTGTTCATTTTTTTTCTTTACAGCTAAGGTACTAGAACTGTCTTAAAATGGGGGTGA
TTGGCTATTGATTATTTTAACGTTGTTTTATAATGTGTGCACTTTGATGCTGTCCTTGGATCTC
TGATCATTACATGTACTCATTGGGCTTCGCCTGATACTGTGTTGAATTTGAATTGTGGGCATGT
GATTTTGCCTTTTTGTAGTTTTACAAATTTTGTGTAATCTACCTCAAATGAGTAATTTTCCAGT
ACTGCATCAGTTTCCTATGCTGGCATTTCTTGTTCAGTAACTTAAGGACTATCTTGTCTCTCAG
TTCAGAGACTAATTATCCAGGTTAGATTGACCGGTTTCACTGCTTCTTAGCAACCTCATAGAAG
GATTTGGGAAAGAAATGTAAAACAGTGCACCTGCTGTGTGCCTAACCTTGAGGAGTCCCGGCTA
AGTGCTACCCGAGCTGGGAAGGAGCTTGCCACTGAATCACAGAAGCCTCTTTAGTATTCAGGTT
ATAAAACTGGTGATTGCCACAGGACCTCAGGCACGGGTTACAGAGAATGGAGGAGTGTGAGCAG
GTGTCGGAAAAGAGGAGCAGAACCCCCTTTTCTGTAGTGTGAGTGTGCACCGTTAGTAACGGTG
CCTACTGGACGCCATGATGTTCATCAATAAATAAGTGTTTTCAAATAATTTATGACAGGTAATT
GATAGTGTGTAATGAATGGACCTTAATAATTGATACCTAAAAGCAGACTGCCTTTGTCAGCTAA
GCTTTGGATGTTTTCGTGAGCAGTGTGCTTTGCGTGTTATTTTTCTACCGAATAGCATCATGGA
TTGTGAGAAAATGGGGAAATTGCCTGTGCCGAGAACGGACAGTGTAAGAGTGGCCGTGCGGGTG
CGGCCGTTCAGCCAGGTCAGTCCATGGTCATTGCCTTGTTGACAATTACTGCCTGATTTTATTA
ATTTTTTAATGATAGTTACTGAATTTGTATTTAAGCTGCTTGTCATTTATGAAATATTAAACTT
ATTTAAATGAACTTGTCAAATGAATAACAGAGATCTAAGCATAATTTAGTAAACATTTAATTTC
ATTCCTTGGTACAAGTAGCATAATAAAAAAAACTGACAAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001258199	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94815	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037261.5
	ENSRNOP00000071711
	ENSRNOP00000071711.1
	ENSRNOP00000078793.1

RefSeq Acc Id:

NP_001258199 ⟸ NM_001271270

- UniProtKB:

D3ZZZ0 (UniProtKB/TrEMBL), A0A8I6A1B2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQDLTAQVTSDLLQFPEVTIEALGEDEITLESVLRGKFAAGKNGLACLACGPQLEVVNSLTGER
LSAYRFSGVNEQPPVVLAVKEFSWHKRTGLLIGLEEADGSVLCLYDLGISRVVKAVVLPGRVTA
IEPIINHGGASASTQHLHPSLRWLFGVAAVVTDVGQILLIDLCLDDLSCSQNEVEASDLEVITG
IPAEVPHIRESVMREGRHLCFQLVSPSGVAISTLSYINRTNQLAVGFADGYLALWNMKSMKREY
YTQLEGGRVPVYAVVFQEPENDPRNCCYLWAVQSTQESEGDVVSLHLLQLAFGDRKCLASGQIL
YEGLEYCEERYTLDLSGGMFPLRGQTSNTKLLGCQSIERFPSHGDREESMREALSPDTSVSVFT
WQVNIYGQGEPSVYLGLFDINRWYHAQMPDSLRSGESLHNCSYFALWSLESVVSRTSPHHILDI
LVHERSLSRGVPPSYPPPEQFFNPSTFNFDATCLLNSGVIHVTCTGFQKETLTFLKKSGPTLNE
VIPDSYNRCLVAGLLSPRLIDIQPSSLSQEEQLEAILSAAIQTSSLGLLTGYIRTWIIEEQPNS
AANLRFVLEWTWNKVILTKEDFDRLCVPLFDGSCRFIDPQTIQSIQQCHLLLSNLSTVLSCFAM
EAQGITERGLVDLNNKHMVTQLICQYAQMVLWFCHSGLLPEGLDDTLQLSRLRYNYPVIQNYYT
SRRQKCERSPRGKWSRDCLLIDGLVSQLGDEVEKLWKRDEGGTGKYPPASIHALLDIYLLDNIS
EASKHAITIYLLLDIMYSFPNKTDTPIESFPTAFAISWGQVKLVQGFWLLDHNDYENGLDLLFH
PVTAKPASWQHSKIIEAFMSQGEHKQALRYLQTMKPTVSSSSDVLLHLSVLLFNRCMVEAWNLL
RQNSNTVNIEELLKHAYEVCQEMGLMEDLLKLPFTNTEQECLVNFLQSSSSVQNHEFLLVHHLQ
RANYISALKLNQTLKNNLTSDRDPRLRERSVTRNSILDQYGKILPRVQRKLAVERAKPYHLSTS
SVFQEVSRPKPLSAFPKKALTGTVITRSTFISNVLSKIGEVWASHEPRNGISLFNSPKTEQPSP
VVHSFPHPELPEAFVGTPISNPSQRISRLLDLVVHPIPQPSQRLEFIQQSPTRSPLCLLSSSLP
LSSQLKRPHQQASRPSELLLLETPLIVKKAKSLALSATSSGFAEFTPPSILRSGLRTTSLASPS
QSPGRSLTPPFRLKETRISFMEEGMNTHWTDTATDDRNAKAFVSTSFHKCGLPAETEWMKTNDK
NTYFPLDVPAKVPQKVVAESLDTHSPRSLEKLDVSKDSTVSSRSDQTLEYHDAPSPEDLEGGVF
VSPKPASSSTELTTNSMVQTEKDNDKNLFKSEGTPSAMEKQIGTIEASVEAFSEFSHLDPVERA
EASLGVSSVREGETSTSKSKTSVLDGIVSIESRTSIPIADHNEFVANKVEDVESSESTTSKCPV
TSERSLDKELTLNLKGDEMEAVVPKESVGLPEERPQTSAGPSDTQEIHLIGCEKLEVQNSEEVA
KSLSFPELCPLGAHRPQYNFDVIEQQFRDLPDDKDSAECDVAEVDGELFVAQSNFSLILEGEEG
EVEASDSNVLPKVTNIATKEKPVSCEEPDNEGHVTDLPSAVTGDQESHKVETLPYVPEPVKVAI
AENLLDVIKDTRSKEATHVAAVEDVDEDRAVMIPKAAHPSRLTNSTPKTVKERRAETVSASQGD
DSIAPRTLTRRQRALSLNVTSEQEPSAAATPQKKTRKVKETREFSESTCSDVKVAPENQLTAPS
PSPSRRGRKKKDLGQGPLATSGAVEEPQATPERLRLRVQPPEPAAEETPSRAKAKLSSARKGTP
RRLRKSIEDGPSADIVNEVRGRKAAGHGRTVRELRSASVEDTQKMEYEQDEERGDQQLPLKRKR
VREREDSVSGVTEEPKLDSSQLTLQVGLDVPATPRKRGRRPKRVVPLGADGTTPGKEQTSPQKE
GPVVRRSTRNTPARNVSTLEKPILVPNKEAATVMTSKKKPTKKSADGSPKGPFPAVSDLADEAA
HRESTDQGVLTSAAFTTPSWSTRTRSRRTMLLTDISEPQTEPLLSSPSLKVPKKETKAKNMEAA
AQLKELVSDISSRFVVSPPALRTRQKSTSNASKLLGELESNPKPVEIIEQKPKRSRTVKTKVSR
NTGKGSSWSPPPIEIKLISPLASPVDEIKVSKPRKTAEVAGKTLGRGRKKPSSFPKQILRRKML

hide sequence

Ensembl Acc Id:

ENSRNOP00000037261 ⟸ ENSRNOT00000035875

Ensembl Acc Id:

ENSRNOP00000071711 ⟸ ENSRNOT00000078034

Ensembl Acc Id:

ENSRNOP00000085009 ⟸ ENSRNOT00000113914

Ensembl Acc Id:

ENSRNOP00000078793 ⟸ ENSRNOT00000115293

Protein Domains

ELYS beta-propeller ELYS-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K160-F1-model_v2	AlphaFold	A0A0G2K160	1-2312	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699054

Promoter ID:

EPDNEW_R9579

Type:

initiation region

Name:

Ahctf1_1

Description:

AT hook containing transcription factor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	98,078,946 - 98,079,006	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561291	AgrOrtholog
BioCyc Gene	G2FUF-17135	BioCyc
Ensembl Genes	ENSRNOG00000023541	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035875.8	UniProtKB/TrEMBL
	ENSRNOT00000078034	ENTREZGENE
	ENSRNOT00000078034.3	UniProtKB/TrEMBL
	ENSRNOT00000115293.2	UniProtKB/TrEMBL
InterPro	ELYS-bb	UniProtKB/TrEMBL
	ELYS/MEL-28_NucAsmblyFactor	UniProtKB/TrEMBL
	ELYS_dom	UniProtKB/TrEMBL
KEGG Report	rno:360886	UniProtKB/TrEMBL
NCBI Gene	360886	ENTREZGENE
PANTHER	ELYS PROTEIN	UniProtKB/TrEMBL
	PROTEIN ELYS	UniProtKB/TrEMBL
Pfam	ELYS	UniProtKB/TrEMBL
	ELYS-bb	UniProtKB/TrEMBL
PhenoGen	Ahctf1	PhenoGen
RatGTEx	ENSRNOG00000023541	RatGTEx
UniProt	A0A0G2K160_RAT	UniProtKB/TrEMBL
	A0A8I5ZM44_RAT	UniProtKB/TrEMBL
	A0A8I6A1B2	ENTREZGENE
	D3ZZZ0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Ahctf1	AT hook containing transcription factor 1	LOC100365024	transcription factor ELYS-like	Data merged from RGD:2319846	1643240	APPROVED
2010-05-05	LOC100365024	transcription factor ELYS-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Ahctf1	AT hook containing transcription factor 1	Ahctf1_predicted	AT hook containing transcription factor 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ahctf1_predicted	AT hook containing transcription factor 1 (predicted)	RGD1561291_predicted	similar to transcription factor ELYS (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1561291_predicted	similar to transcription factor ELYS (predicted)	LOC360886	similar to transcription factor ELYS	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360886	similar to transcription factor ELYS			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar