Nr2c2ap (nuclear receptor 2C2-associated protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nr2c2ap (nuclear receptor 2C2-associated protein) Rattus norvegicus
Analyze
Symbol: Nr2c2ap
Name: nuclear receptor 2C2-associated protein
RGD ID: 1561190
Description: Orthologous to human NR2C2AP (nuclear receptor 2C2 associated protein); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-Tetrachlorodibenzofuran; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC361128; LOC361128; MGC112689; similar to TR4 orphan receptor associated protein TRA16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,322,395 - 19,324,912 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1619,322,405 - 19,324,637 (-)EnsemblGRCr8
mRatBN7.21619,288,454 - 19,290,940 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,288,454 - 19,290,719 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1619,328,256 - 19,330,500 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,460,523 - 20,462,766 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,381,219 - 19,383,463 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01621,036,648 - 21,039,481 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,036,646 - 21,038,844 (-)Ensemblrn6Rnor6.0
Rnor_5.01620,886,519 - 20,889,368 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41619,771,849 - 19,774,045 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1619,477,049 - 19,479,245 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:23376485  


Genomics

Comparative Map Data
Nr2c2ap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,322,395 - 19,324,912 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1619,322,405 - 19,324,637 (-)EnsemblGRCr8
mRatBN7.21619,288,454 - 19,290,940 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,288,454 - 19,290,719 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1619,328,256 - 19,330,500 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,460,523 - 20,462,766 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,381,219 - 19,383,463 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01621,036,648 - 21,039,481 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,036,646 - 21,038,844 (-)Ensemblrn6Rnor6.0
Rnor_5.01620,886,519 - 20,889,368 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41619,771,849 - 19,774,045 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1619,477,049 - 19,479,245 (-)NCBICelera
Cytogenetic Map16p14NCBI
NR2C2AP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381919,201,409 - 19,203,414 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1919,201,409 - 19,203,729 (-)Ensemblhg38GRCh38
GRCh371919,312,218 - 19,314,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,173,224 - 19,175,238 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1919,217,020 - 19,219,034 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,875,988 - 18,878,002 (-)NCBIHuRef
CHM1_11919,312,735 - 19,314,749 (-)NCBICHM1_1
T2T-CHM13v2.01919,337,959 - 19,339,964 (-)NCBIT2T-CHM13v2.0
Nr2c2ap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,583,977 - 70,586,402 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,583,983 - 70,586,399 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38870,131,327 - 70,133,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,131,333 - 70,133,749 (+)Ensemblmm10GRCm38
MGSCv37872,655,232 - 72,657,647 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36873,060,322 - 73,062,741 (+)NCBIMGSCv36mm8
Celera872,686,772 - 72,689,185 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Nr2c2ap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,618,957 - 2,635,982 (+)Ensembl
ChiLan1.0NW_0049555242,634,302 - 2,635,982 (+)NCBIChiLan1.0ChiLan1.0
NR2C2AP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22024,063,458 - 24,066,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11923,069,613 - 23,073,208 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,639,380 - 18,641,725 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,640,163 - 19,642,179 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,640,163 - 19,642,179 (-)EnsemblpanPan2panpan1.1
NR2C2AP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12043,976,373 - 43,978,410 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2043,976,665 - 43,977,823 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2043,893,486 - 43,895,518 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02044,464,501 - 44,466,533 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,464,527 - 44,466,516 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,701,606 - 43,703,638 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,111,386 - 44,113,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,386,702 - 44,388,734 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nr2c2ap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,674,747 - 202,676,966 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,223,860 - 2,225,600 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,223,907 - 2,225,434 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR2C2AP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,675,990 - 58,678,130 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1258,675,987 - 58,678,025 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NR2C2AP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,669,412 - 17,671,640 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,669,933 - 17,671,398 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660741,640,809 - 1,642,840 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr2c2ap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249082,094,783 - 2,097,088 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nr2c2ap
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11312,397,849 - 12,399,960 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nr2c2ap
5 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:99
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000060012
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161574800625801629Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)161627818427244292Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)161590580260905802Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
RH143609  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81619,323,638 - 19,324,006 (+)Marker Load Pipeline
RH 3.4 Map16236.1UniSTS
Cytogenetic Map16p14UniSTS
RH140449  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,291,035 - 19,291,222 (+)MAPPERmRatBN7.2
Rnor_6.01621,039,230 - 21,039,416NCBIRnor6.0
Rnor_5.01620,889,101 - 20,889,287UniSTSRnor5.0
RGSC_v3.41619,774,431 - 19,774,617UniSTSRGSC3.4
Celera1619,479,631 - 19,479,817UniSTS
RH 3.4 Map16220.3UniSTS
Cytogenetic Map16p14UniSTS
RH140987  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,288,612 - 19,288,799 (+)MAPPERmRatBN7.2
Rnor_6.01621,036,807 - 21,036,993NCBIRnor6.0
Rnor_5.01620,886,678 - 20,886,864UniSTSRnor5.0
RGSC_v3.41619,772,008 - 19,772,194UniSTSRGSC3.4
Celera1619,477,208 - 19,477,394UniSTS
RH 3.4 Map16220.8UniSTS
Cytogenetic Map16p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060012   ⟹   ENSRNOP00000056763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1619,322,405 - 19,324,637 (-)Ensembl
mRatBN7.2 Ensembl1619,288,464 - 19,290,650 (-)Ensembl
Rnor_6.0 Ensembl1621,036,646 - 21,038,844 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100734   ⟹   ENSRNOP00000092769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1619,322,405 - 19,324,637 (-)Ensembl
mRatBN7.2 Ensembl1619,288,454 - 19,290,716 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116933   ⟹   ENSRNOP00000096201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1619,323,487 - 19,324,637 (-)Ensembl
mRatBN7.2 Ensembl1619,289,546 - 19,290,719 (-)Ensembl
RefSeq Acc Id: NM_001047104   ⟹   NP_001040569
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,322,395 - 19,324,637 (-)NCBI
mRatBN7.21619,288,454 - 19,290,696 (-)NCBI
Rnor_6.01621,036,648 - 21,038,844 (-)NCBI
Rnor_5.01620,886,519 - 20,889,368 (-)NCBI
RGSC_v3.41619,771,849 - 19,774,045 (-)RGD
Celera1619,477,049 - 19,479,245 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399419   ⟹   NP_001386348
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,322,395 - 19,324,637 (-)NCBI
mRatBN7.21619,288,454 - 19,290,696 (-)NCBI
RefSeq Acc Id: NM_001399420   ⟹   NP_001386349
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,322,395 - 19,324,637 (-)NCBI
mRatBN7.21619,288,454 - 19,290,696 (-)NCBI
RefSeq Acc Id: NM_001399421   ⟹   NP_001386350
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,322,395 - 19,324,637 (-)NCBI
mRatBN7.21619,288,454 - 19,290,696 (-)NCBI
RefSeq Acc Id: XM_063275508   ⟹   XP_063131578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,322,395 - 19,324,912 (-)NCBI
RefSeq Acc Id: NP_001040569   ⟸   NM_001047104
- Peptide Label: isoform 1
- UniProtKB: Q4KM83 (UniProtKB/TrEMBL),   A6KA88 (UniProtKB/TrEMBL),   F7F4U7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056763   ⟸   ENSRNOT00000060012
Ensembl Acc Id: ENSRNOP00000092769   ⟸   ENSRNOT00000100734
Ensembl Acc Id: ENSRNOP00000096201   ⟸   ENSRNOT00000116933
RefSeq Acc Id: NP_001386349   ⟸   NM_001399420
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001386348   ⟸   NM_001399419
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AI65 (UniProtKB/TrEMBL),   A6KA87 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386350   ⟸   NM_001399421
- Peptide Label: isoform 4
RefSeq Acc Id: XP_063131578   ⟸   XM_063275508
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI65 (UniProtKB/TrEMBL),   A6KA87 (UniProtKB/TrEMBL)
Protein Domains
F5/8 type C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KM83-F1-model_v2 AlphaFold Q4KM83 1-159 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700044
Promoter ID:EPDNEW_R10568
Type:multiple initiation site
Name:Nr2c2ap_1
Description:nuclear receptor 2C2-associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01621,038,892 - 21,038,952EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561190 AgrOrtholog
BioCyc Gene G2FUF-11757 BioCyc
Ensembl Genes ENSRNOG00000022247 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060012 ENTREZGENE
  ENSRNOT00000060012.6 UniProtKB/TrEMBL
  ENSRNOT00000100734 ENTREZGENE
  ENSRNOT00000100734.2 UniProtKB/TrEMBL
  ENSRNOT00000116933.2 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7389633 IMAGE-MGC_LOAD
InterPro FA58C UniProtKB/TrEMBL
  Galactose-bd-like UniProtKB/TrEMBL
KEGG Report rno:361128 UniProtKB/TrEMBL
MGC_CLONE MGC:112689 IMAGE-MGC_LOAD
NCBI Gene 361128 ENTREZGENE
Pfam F5_F8_type_C UniProtKB/TrEMBL
PhenoGen Nr2c2ap PhenoGen
PROSITE FA58C_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022247 RatGTEx
Superfamily-SCOP Gal_bind_like UniProtKB/TrEMBL
UniProt A0A8I6AI65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B3U7_RAT UniProtKB/TrEMBL
  A0ABZ3NND5_RAT UniProtKB/TrEMBL
  A6KA87 ENTREZGENE, UniProtKB/TrEMBL
  A6KA88 ENTREZGENE, UniProtKB/TrEMBL
  F7F4U7 ENTREZGENE, UniProtKB/TrEMBL
  Q4KM83 ENTREZGENE
UniProt Secondary Q4KM83 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-17 Nr2c2ap  nuclear receptor 2C2-associated protein  LOC361128  similar to TR4 orphan receptor associated protein TRA16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC361128  similar to TR4 orphan receptor associated protein TRA16      Symbol and Name status set to provisional 70820 PROVISIONAL