Ccdc148 (coiled-coil domain containing 148) - Rat Genome Database

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Gene: Ccdc148 (coiled-coil domain containing 148) Rattus norvegicus
Analyze
Symbol: Ccdc148
Name: coiled-coil domain containing 148
RGD ID: 1561169
Description: Orthologous to human CCDC148 (coiled-coil domain containing 148); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 148; LOC311051; RGD1561169; similar to BC062650 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8363,765,656 - 64,040,802 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl363,765,668 - 64,040,757 (-)EnsemblGRCr8
mRatBN7.2343,356,885 - 43,631,999 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl343,356,892 - 43,631,991 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx346,702,910 - 46,982,416 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0355,284,446 - 55,563,688 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0353,062,984 - 53,341,843 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0344,892,212 - 45,210,897 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl344,892,219 - 45,210,474 (-)Ensemblrn6Rnor6.0
Rnor_5.0350,007,273 - 50,327,070 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4340,579,362 - 40,856,981 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera341,414,053 - 41,682,225 (-)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
amenorrhea  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ccdc148
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8363,765,656 - 64,040,802 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl363,765,668 - 64,040,757 (-)EnsemblGRCr8
mRatBN7.2343,356,885 - 43,631,999 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl343,356,892 - 43,631,991 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx346,702,910 - 46,982,416 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0355,284,446 - 55,563,688 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0353,062,984 - 53,341,843 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0344,892,212 - 45,210,897 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl344,892,219 - 45,210,474 (-)Ensemblrn6Rnor6.0
Rnor_5.0350,007,273 - 50,327,070 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4340,579,362 - 40,856,981 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera341,414,053 - 41,682,225 (-)NCBICelera
Cytogenetic Map3q21NCBI
CCDC148
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382158,171,073 - 158,456,753 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2158,171,073 - 158,456,753 (-)Ensemblhg38GRCh38
GRCh372159,027,585 - 159,313,265 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362158,736,724 - 159,021,460 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2152,644,608 - 152,930,040 (-)NCBICelera
Cytogenetic Map2q24.1NCBI
HuRef2150,916,146 - 151,201,571 (-)NCBIHuRef
CHM1_12159,033,746 - 159,319,451 (-)NCBICHM1_1
T2T-CHM13v2.02158,627,837 - 158,913,558 (-)NCBIT2T-CHM13v2.0
Ccdc148
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39258,701,637 - 58,991,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl258,711,082 - 58,991,027 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38258,821,697 - 59,160,828 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl258,821,070 - 59,160,683 (-)Ensemblmm10GRCm38
MGSCv37258,674,108 - 58,871,017 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36258,637,087 - 58,863,257 (-)NCBIMGSCv36mm8
Celera260,577,033 - 60,853,235 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.3NCBI
Ccdc148
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544915,154,366 - 15,271,924 (+)NCBIChiLan1.0ChiLan1.0
CCDC148
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21360,668,166 - 61,131,752 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B60,683,136 - 61,146,726 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B45,433,276 - 45,726,111 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B162,673,203 - 162,965,356 (-)NCBIPanPan1.1PanPan1.1panPan2
CCDC148
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,059,318 - 4,342,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,062,098 - 4,342,287 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha364,197,756 - 4,482,820 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0364,184,295 - 4,465,604 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl364,229,258 - 4,465,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,229,910 - 4,466,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,245,093 - 4,526,411 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,283,965 - 4,569,368 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc148
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303121,191,082 - 121,496,815 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646920,231,781 - 20,426,027 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646920,225,383 - 20,428,417 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC148
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1565,062,034 - 65,431,023 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11565,068,372 - 65,431,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21572,385,891 - 72,468,650 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC148
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11043,581,311 - 43,859,345 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1043,582,307 - 43,768,387 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040155,718,533 - 155,998,631 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc148
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247327,314,517 - 7,557,047 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247327,209,179 - 7,622,950 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc148
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1536,587,123 - 36,770,930 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc148
1860 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:356
Count of miRNA genes:215
Interacting mature miRNAs:248
Transcripts:ENSRNOT00000033090, ENSRNOT00000070990
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)35860129171157804Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)34790417270710963Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)34790417270710963Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)35860129171157804Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)35911940270710963Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)35986366373704481Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)34790417270710963Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)35860129171157804Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat

Markers in Region
D3Arb17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2343,431,424 - 43,431,527 (+)MAPPERmRatBN7.2
Rnor_6.0345,009,408 - 45,009,508NCBIRnor6.0
Rnor_5.0350,126,710 - 50,126,810UniSTSRnor5.0
RGSC_v3.4340,652,920 - 40,653,021RGDRGSC3.4
RGSC_v3.4340,652,921 - 40,653,021UniSTSRGSC3.4
Celera341,488,168 - 41,488,268UniSTS
RGSC_v3.1340,549,292 - 40,549,393RGD
Cytogenetic Map3q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 2 64 183 84 84 55 16 55 6 258 105 9 159 82 80 29 27 27

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC167021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000086371   ⟹   ENSRNOP00000075475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl363,941,320 - 63,999,363 (-)Ensembl
mRatBN7.2 Ensembl343,532,548 - 43,590,595 (-)Ensembl
Rnor_6.0 Ensembl345,110,687 - 45,169,118 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091777   ⟹   ENSRNOP00000072674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl363,765,668 - 64,040,757 (-)Ensembl
mRatBN7.2 Ensembl343,356,892 - 43,631,991 (-)Ensembl
Rnor_6.0 Ensembl344,892,219 - 45,210,474 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108632   ⟹   ENSRNOP00000095344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl343,356,892 - 43,631,991 (-)Ensembl
RefSeq Acc Id: NM_001107732   ⟹   NP_001101202
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,765,668 - 64,040,757 (-)NCBI
mRatBN7.2343,356,892 - 43,631,991 (-)NCBI
Rnor_6.0344,892,219 - 45,210,474 (-)NCBI
Rnor_5.0350,007,273 - 50,327,070 (-)NCBI
RGSC_v3.4340,579,362 - 40,856,981 (-)RGD
Celera341,414,053 - 41,682,225 (-)RGD
Sequence:
RefSeq Acc Id: XM_039104821   ⟹   XP_038960749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,765,656 - 64,040,782 (-)NCBI
mRatBN7.2343,356,885 - 43,631,999 (-)NCBI
RefSeq Acc Id: XM_039104822   ⟹   XP_038960750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,765,656 - 64,040,776 (-)NCBI
mRatBN7.2343,356,885 - 43,631,999 (-)NCBI
RefSeq Acc Id: XM_039104823   ⟹   XP_038960751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,765,656 - 63,967,006 (-)NCBI
mRatBN7.2343,356,885 - 43,558,273 (-)NCBI
RefSeq Acc Id: XM_039104826   ⟹   XP_038960754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,905,715 - 64,040,802 (-)NCBI
mRatBN7.2343,496,945 - 43,631,999 (-)NCBI
RefSeq Acc Id: XM_039104827   ⟹   XP_038960755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,765,656 - 64,040,800 (-)NCBI
mRatBN7.2343,356,885 - 43,631,999 (-)NCBI
RefSeq Acc Id: XM_039104828   ⟹   XP_038960756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,902,997 - 64,040,800 (-)NCBI
mRatBN7.2343,489,197 - 43,631,999 (-)NCBI
RefSeq Acc Id: XM_063283612   ⟹   XP_063139682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,765,656 - 64,040,776 (-)NCBI
RefSeq Acc Id: XM_063283613   ⟹   XP_063139683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,765,656 - 64,040,776 (-)NCBI
RefSeq Acc Id: XM_063283614   ⟹   XP_063139684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,902,997 - 64,040,800 (-)NCBI
RefSeq Acc Id: XR_010064611
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,770,299 - 64,040,782 (-)NCBI
RefSeq Acc Id: XR_010064612
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,772,491 - 64,040,776 (-)NCBI
RefSeq Acc Id: NP_001101202   ⟸   NM_001107732
- UniProtKB: E9PU06 (UniProtKB/TrEMBL),   A6JF61 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075475   ⟸   ENSRNOT00000086371
Ensembl Acc Id: ENSRNOP00000072674   ⟸   ENSRNOT00000091777
RefSeq Acc Id: XP_038960755   ⟸   XM_039104827
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ANE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960749   ⟸   XM_039104821
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960750   ⟸   XM_039104822
- Peptide Label: isoform X1
- UniProtKB: E9PU06 (UniProtKB/TrEMBL),   A6JF61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960751   ⟸   XM_039104823
- Peptide Label: isoform X1
- UniProtKB: E9PU06 (UniProtKB/TrEMBL),   A6JF61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960756   ⟸   XM_039104828
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038960754   ⟸   XM_039104826
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000095344   ⟸   ENSRNOT00000108632
RefSeq Acc Id: XP_063139682   ⟸   XM_063283612
- Peptide Label: isoform X1
- UniProtKB: A6JF61 (UniProtKB/TrEMBL),   E9PU06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139683   ⟸   XM_063283613
- Peptide Label: isoform X1
- UniProtKB: A6JF61 (UniProtKB/TrEMBL),   E9PU06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139684   ⟸   XM_063283614
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PU06-F1-model_v2 AlphaFold E9PU06 1-599 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561169 AgrOrtholog
BioCyc Gene G2FUF-49647 BioCyc
Ensembl Genes ENSRNOG00000057740 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000086371.3 UniProtKB/TrEMBL
  ENSRNOT00000091777 ENTREZGENE
  ENSRNOT00000091777.3 UniProtKB/TrEMBL
InterPro CCDC148/CCDC112 UniProtKB/TrEMBL
KEGG Report rno:311051 UniProtKB/TrEMBL
NCBI Gene 311051 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 148 UniProtKB/TrEMBL
  PTHR21549 UniProtKB/TrEMBL
PhenoGen Ccdc148 PhenoGen
RatGTEx ENSRNOG00000057740 RatGTEx
UniProt A0A8I6ANE7 ENTREZGENE
  A6JF61 ENTREZGENE, UniProtKB/TrEMBL
  B2RZ45 ENTREZGENE, UniProtKB/TrEMBL
  E9PU06 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Ccdc148  coiled-coil domain containing 148  RGD1561169_predicted  similar to BC062650 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561169_predicted  similar to BC062650 protein (predicted)  LOC311051  similar to BC062650 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC311051  similar to BC062650 protein      Symbol and Name status set to provisional 70820 PROVISIONAL