Rps16l1 (ribosomal protein S16 like 1) - Rat Genome Database

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Gene: Rps16l1 (ribosomal protein S16 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps16l1 (Ensembl: AC117869.1)
Name: ribosomal protein S16 like 1 (Ensembl:ribosomal protein S16)
RGD ID: 1561137
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16); INTERACTS WITH rotenone.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S16-like; LOC366030; RGD1561137; similar to 40S ribosomal protein S16; small ribosomal subunit protein uS9-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,903,897 - 41,904,439 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1956,922,246 - 56,923,020 (+)EnsemblGRCr8
GRCr8 Ensembl341,903,957 - 41,904,430 (+)EnsemblGRCr8
mRatBN7.2321,494,155 - 21,494,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1940,013,001 - 40,013,775 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl321,494,203 - 21,494,676 (+)EnsemblmRatBN7.2
Rnor_6.0321,983,880 - 21,984,383 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0327,221,857 - 27,222,360 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4317,486,356 - 17,505,047 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera319,928,903 - 19,929,406 (+)NCBICelera
Cytogenetic Map3q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
rotenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps16l1
11 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000043621
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 1 8 31 23 21 13 50 13 6 109 69 3 22 17 29 8 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000041965   ⟹   ENSRNOP00000077462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1956,922,246 - 56,923,020 (+)Ensembl
mRatBN7.2 Ensembl1940,013,001 - 40,013,775 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000043621   ⟹   ENSRNOP00000064270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,903,957 - 41,904,430 (+)Ensembl
mRatBN7.2 Ensembl321,494,203 - 21,494,676 (+)Ensembl
Rnor_6.0 Ensembl321,983,841 - 21,984,332 (+)Ensembl
RefSeq Acc Id: XM_039106057   ⟹   XP_038961985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,903,897 - 41,904,439 (+)NCBI
mRatBN7.2321,494,155 - 21,494,684 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038961985 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064270
  ENSRNOP00000064270.2
  ENSRNOP00000077462.1
RefSeq Acc Id: XP_038961985   ⟸   XM_039106057
- UniProtKB: M0R4I3 (UniProtKB/TrEMBL),   A0A8I5YCD9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000064270   ⟸   ENSRNOT00000043621
Ensembl Acc Id: ENSRNOP00000077462   ⟸   ENSRNOT00000041965

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4I3-F1-model_v2 AlphaFold M0R4I3 1-164 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561137 AgrOrtholog
BioCyc Gene G2FUF-49926 BioCyc
Ensembl Genes ENSRNOG00000030143 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000031439 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041965.7 UniProtKB/TrEMBL
  ENSRNOT00000043621 ENTREZGENE
  ENSRNOT00000043621.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.10 UniProtKB/TrEMBL
InterPro Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
  Ribosomal_S9 UniProtKB/TrEMBL
  Ribosomal_S9_CS UniProtKB/TrEMBL
NCBI Gene 366030 ENTREZGENE
PANTHER PTHR21569 UniProtKB/TrEMBL
  SMALL RIBOSOMAL SUBUNIT PROTEIN US9 UniProtKB/TrEMBL
Pfam Ribosomal_S9 UniProtKB/TrEMBL
PhenoGen Rps16l1 PhenoGen
PROSITE RIBOSOMAL_S9 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030143 RatGTEx
  ENSRNOG00000031439 RatGTEx
Superfamily-SCOP SSF54211 UniProtKB/TrEMBL
UniProt A0A8I5YCD9 ENTREZGENE, UniProtKB/TrEMBL
  M0R4I3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps16l1  ribosomal protein S16 like 1  RGD1561137  similar to 40S ribosomal protein S16  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561137  similar to 40S ribosomal protein S16   RGD1561137_predicted  similar to 40S ribosomal protein S16 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561137_predicted  similar to 40S ribosomal protein S16 (predicted)  LOC366030  similar to 40S ribosomal protein S16  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC366030  similar to 40S ribosomal protein S16      Symbol and Name status set to provisional 70820 PROVISIONAL