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Gene: Slc35f4 (solute carrier family 35, member F4) Rattus norvegicus

Analyze

Symbol:

Slc35f4

Name:

solute carrier family 35, member F4

RGD ID:

1561109

Description:

Predicted to be located in membrane. Orthologous to human SLC35F4 (solute carrier family 35 member F4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305865; RGD1561109; similar to solute carrier family 35, member F3; solute carrier family 35 member F4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC35F4 (solute carrier family 35 member F4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc35f4 (solute carrier family 35, member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc35f4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC35F4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC35F4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc35f4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC35F4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC35F4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc35f4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc35f4 (solute carrier family 35 member F4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	POU2F1 (POU class 2 homeobox 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC35F4 (solute carrier family 35 member F4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc35f4 (solute carrier family 35, member F4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35f4 (solute carrier family 35 member F4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y73B6BL.31	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y73B6BL.31	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG42322	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG42322	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc35f4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	25,051,879 - 25,313,237 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	25,051,366 - 25,313,150 (-)	Ensembl				GRCr8
mRatBN7.2	15	22,572,266 - 22,833,646 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	22,572,342 - 22,833,385 (-)	Ensembl				mRatBN7.2
Rnor_6.0	15	26,151,800 - 26,445,338 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	26,152,000 - 26,175,645 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	30,080,161 - 30,372,154 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	25,263,319 - 25,326,899 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	22,946,098 - 23,202,288 (-)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

Cuprizon (EXP)

genistein (ISO)

ozone (ISO)

paracetamol (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

Soman (EXP)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

choline transport (ISO)

Cellular Component

membrane (IEA)

Molecular Function

choline transmembrane transporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Slc35f4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	25,051,879 - 25,313,237 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	25,051,366 - 25,313,150 (-)	Ensembl				GRCr8
mRatBN7.2	15	22,572,266 - 22,833,646 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	22,572,342 - 22,833,385 (-)	Ensembl				mRatBN7.2
Rnor_6.0	15	26,151,800 - 26,445,338 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	26,152,000 - 26,175,645 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	30,080,161 - 30,372,154 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	25,263,319 - 25,326,899 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	22,946,098 - 23,202,288 (-)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

SLC35F4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	57,563,920 - 57,983,181 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	57,563,920 - 57,982,194 (-)	Ensembl			hg38	GRCh38
GRCh37	14	58,030,638 - 58,332,810 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	57,100,393 - 57,133,368 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	38,080,673 - 38,113,630 (-)	NCBI		Celera
Cytogenetic Map	14	q22.3-q23.1	NCBI
HuRef	14	38,196,070 - 38,498,612 (-)	NCBI		HuRef
CHM1_1	14	57,969,223 - 58,271,130 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	51,770,870 - 52,190,085 (-)	NCBI		T2T-CHM13v2.0

Slc35f4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	49,535,976 - 49,763,354 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	49,535,976 - 49,763,503 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	49,298,519 - 49,525,837 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	49,298,519 - 49,526,046 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	49,918,195 - 50,145,512 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	48,220,471 - 48,447,788 (-)	NCBI		MGSCv36	mm8
Celera	14	45,503,687 - 45,741,312 (-)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	25.52	NCBI

Slc35f4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	11,436,931 - 11,661,716 (-)	Ensembl
ChiLan1.0	NW_004955466	11,436,970 - 11,465,593 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC35F4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	58,688,401 - 59,108,877 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	57,904,915 - 58,325,395 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	38,158,548 - 38,459,424 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	56,428,559 - 56,729,710 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	56,428,772 - 56,729,667 (-)	Ensembl			panPan2	panpan1.1

SLC35F4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	33,057,665 - 33,288,769 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	33,057,793 - 33,288,644 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	32,825,843 - 33,057,354 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	33,308,343 - 33,534,356 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	33,308,339 - 33,534,450 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	32,912,630 - 33,143,979 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	32,988,331 - 33,215,737 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	33,364,316 - 33,590,313 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc35f4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	71,871,679 - 72,095,206 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	2,088,133 - 2,319,988 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	2,087,942 - 2,320,020 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35F4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	186,688,343 - 186,952,307 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	186,687,797 - 186,952,292 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	207,257,494 - 207,287,638 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35F4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	34,753,307 - 35,050,256 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	34,753,967 - 34,787,491 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	22,970,568 - 23,264,867 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35f4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624884	2,556,253 - 2,845,924 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624884	2,555,959 - 2,845,982 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc35f4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	73,527,154 - 73,774,500 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc35f4
2563 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	160
Count of miRNA genes:	70
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000020139, ENSRNOT00000020175
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	22728353	42072050	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	32342855	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
5685002	Bss103	Bone structure and strength QTL 103	2.8		tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	15	16911521	32439851	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat

Markers in Region

D15Rat31

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	22,711,773 - 22,711,984 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	26,288,592 - 26,288,802	NCBI	Rnor6.0
Rnor_5.0	15	30,216,394 - 30,216,604	UniSTS	Rnor5.0
RGSC_v3.4	15	25,410,550 - 25,410,881	RGD	RGSC3.4
RGSC_v3.4	15	25,410,630 - 25,410,840	UniSTS	RGSC3.4
Celera	13	102,708,249 - 102,708,459	UniSTS
RGSC_v3.1	15	25,426,250 - 25,426,581	RGD
RH 2.0 Map	15	139.6	RGD
FHH x ACI Map	15	22.15	RGD
Cytogenetic Map	15	p14	UniSTS
Cytogenetic Map	13	q27	UniSTS

D15Rat80

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	25,285,835 - 25,286,012 (+)	Marker Load Pipeline
mRatBN7.2	15	22,806,240 - 22,806,419 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	26,381,041 - 26,381,221	NCBI	Rnor6.0
Rnor_5.0	15	30,309,351 - 30,309,531	UniSTS	Rnor5.0
RGSC_v3.4	15	25,506,124 - 25,506,636	RGD	RGSC3.4
RGSC_v3.4	15	25,506,389 - 25,506,569	UniSTS	RGSC3.4
Celera	15	23,174,812 - 23,174,990	UniSTS
RGSC_v3.1	15	25,521,824 - 25,522,336	RGD
RH 2.0 Map	15	141.8	RGD
SHRSP x BN Map	15	21.0698	RGD
Cytogenetic Map	15	p14	UniSTS

D15Got108

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	22,753,584 - 22,753,743 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	26,328,420 - 26,328,578	NCBI	Rnor6.0
Rnor_5.0	15	30,257,078 - 30,257,236	UniSTS	Rnor5.0
RGSC_v3.4	15	25,453,127 - 25,453,286	RGD	RGSC3.4
RGSC_v3.4	15	25,453,128 - 25,453,286	UniSTS	RGSC3.4
Celera	15	23,122,276 - 23,122,434	UniSTS
RGSC_v3.1	15	25,468,827 - 25,468,986	RGD
Cytogenetic Map	15	p14	UniSTS

RH131761

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	22,572,450 - 22,572,652 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	26,151,985 - 26,152,186	NCBI	Rnor6.0
Rnor_5.0	15	30,080,346 - 30,080,547	UniSTS	Rnor5.0
RGSC_v3.4	15	25,263,504 - 25,263,705	UniSTS	RGSC3.4
Celera	15	22,946,283 - 22,946,484	UniSTS
Cytogenetic Map	15	p14	UniSTS

RH132233

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	22,585,751 - 22,585,931 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	26,165,284 - 26,165,463	NCBI	Rnor6.0
Rnor_5.0	15	30,093,645 - 30,093,824	UniSTS	Rnor5.0
RGSC_v3.4	15	25,276,709 - 25,276,888	UniSTS	RGSC3.4
Celera	15	22,959,585 - 22,959,764	UniSTS
Cytogenetic Map	15	p14	UniSTS

RH137488

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	22,826,057 - 22,826,274 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	26,438,024 - 26,438,240	NCBI	Rnor6.0
Rnor_5.0	15	30,364,613 - 30,364,829	UniSTS	Rnor5.0
RGSC_v3.4	15	25,528,931 - 25,529,147	UniSTS	RGSC3.4
Celera	15	23,194,618 - 23,194,834	UniSTS
Cytogenetic Map	15	p14	UniSTS

BF390601

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	22,586,388 - 22,586,538 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	26,165,921 - 26,166,070	NCBI	Rnor6.0
Rnor_5.0	15	30,094,282 - 30,094,431	UniSTS	Rnor5.0
RGSC_v3.4	15	25,277,346 - 25,277,495	UniSTS	RGSC3.4
Celera	15	22,960,222 - 22,960,371	UniSTS
Cytogenetic Map	15	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
5	2	4	106	11	9	1	4	1	3	39	13	100	18	51	8	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001433014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020175 ⟹ ENSRNOP00000020175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	25,051,366 - 25,313,150 (-)	Ensembl
mRatBN7.2 Ensembl	15	22,572,342 - 22,833,385 (-)	Ensembl
Rnor_6.0 Ensembl	15	26,152,000 - 26,175,645 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094105 ⟹ ENSRNOP00000094704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	25,051,366 - 25,072,192 (-)	Ensembl
mRatBN7.2 Ensembl	15	22,572,342 - 22,592,581 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105556 ⟹ ENSRNOP00000081777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	22,586,845 - 22,833,385 (-)	Ensembl

RefSeq Acc Id:

XM_008770650 ⟹ XP_008768872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	25,051,879 - 25,313,237 (-)	NCBI
mRatBN7.2	15	22,572,266 - 22,833,646 (-)	NCBI
Rnor_6.0	15	26,151,800 - 26,445,338 (-)	NCBI

Sequence:

show sequence

ATGGATGTCAAGGCGGCCCCCAACGGGGTGGCCACCATCGAGGACCGGATCCTGCGGATTACTG
GCTACTATGGCTATTACCCGGGTTACTCCAGCCAGAAAAGTACCTCCAGATCATCAGTGACTCG
ATGCAAGCCAGGACCCAACTGCCCCAGCTCACACAGCAGCATCAGCAGGCAACTGTCCCCTCTG
TCGGTCACGGAAGATTCTGCCGCTCCTATTCTTGAGCTTCAGAGCAGAGGATCCTCCGGGGTTT
GTGGTCGAAGAGTGGAGAGACAGAACAGATCAGGGGATGATGGGGCACAGAATCACCCTGAGAG
CAGCAGCCAAGAAAACGGACTCAAGGCGCGCTGCCTGTCCTGCACGTCTGTGGTTCTGAAGACC
ATCTGGGGACTCTTGATCATCCTGTCAGTGTCGTCATCTTGGGTTGGAACCACACAAATTGTAA
AAATCACTTACAAGAACTTTTACTGTCCCTTTTTCATGACTTGGTTTTCAACAAACTGGAACAT
TATGTTCTTCCCAGTCTATTACTCCGGCCATCTGGCCACGGCTCAAGAAAAGCAGTCGCCAATG
AAAAAATTCAGGGAATGCAGTCGGATCTTTGGTGAAGATGGCCTGACACTGAAGCTCTTTCTTA
AAAGAACTGCTCCCTTTTCTATTCTGTGGACTTTGACAAATTACCTGTATTTACTGGCTTTAAA
GAAGCTGACAGCCACTGACGTCTCTGCTCTGTTCTGTTGCAACAAAGCCTTTGTCTTCTTGCTG
TCCTGGATTGTGCTGAAGGACAGGTTCATGGGAGTACGGATCGTCGCAGCAATAATGGCAATTA
CCGGCATCGTCATGATGGCGTACGCGGATAATTTCCATGCTGATTCCATCATCGGTGTGGCATT
TGCTGTGGGCTCAGCCTCCACATCTGCACTGTATAAGGTTCTGTTTAAGATGTTTCTGGGCAGT
GCCAACTTTGGTGAAGCTGCACACTTTGTCTCTACCTTGGGGTTCTTCAATTTGATCTTTATCT
CCTTCACGCCCATCATCCTGTATTTCACCAAGGTGGAGCACTGGTCCTCCTTTGCTGCACTGCC
CTGGGGCTGTCTCTGTGGGATGGCAGGACTATGGCTAGCATTCAACATCCTGGTAAACGTTGGA
GTGGTCCTGACATATCCAATCCTCATCTCCATTGGAACAGTACTCAGTGTTCCTGGAAACGCAG
CTGTGGATCTCCTGAAGCAAGAGGTGATATTCAATGTGGTCCGCCTGGCTGCCACCATCATCAT
CTGTATCGGGTTTCTTCTGATGCTACTGCCGGAGGAGTGGGATGAAATTACTCTGAGATTTATC
AACAGCCTGAAGGAGAAGAAGAGCGAGGAGCATGTGGAAGACTTGACAGATGTGAGTGTGCACC
TGAGGAGCAGAAGCAGGGTCAACGGGACAGTGTCCCTACCGCTGGCTTGAACAGAAACGACCCC
TGGATGCACGTGTGTGTATATTCTGTGAATATAAAATTTTCTCACTACCTGTACATTCAAATGA
CACTATCAACTCCGAGTTTAAATAAACCATATGTGAAATATCACCAAGAATAAAAGTTTACATT
TATATGCATATCAAGGAACTGATGTAAATAATCATAATAAAATTTTTTACTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001419943	(Get FASTA)	NCBI Sequence Viewer
	XP_008768872	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88392	(Get FASTA)	NCBI Sequence Viewer
	EDL88393	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020175
	ENSRNOP00000020175.8
	ENSRNOP00000094704.1

RefSeq Acc Id:

XP_008768872 ⟸ XM_008770650

- Sequence:

show sequence

MDVKAAPNGVATIEDRILRITGYYGYYPGYSSQKSTSRSSVTRCKPGPNCPSSHSSISRQLSPL
SVTEDSAAPILELQSRGSSGVCGRRVERQNRSGDDGAQNHPESSSQENGLKARCLSCTSVVLKT
IWGLLIILSVSSSWVGTTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPM
KKFRECSRIFGEDGLTLKLFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLL
SWIVLKDRFMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGS
ANFGEAAHFVSTLGFFNLIFISFTPIILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVG
VVLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLPEEWDEITLRFI
NSLKEKKSEEHVEDLTDVSVHLRSRSRVNGTVSLPLA

hide sequence

Ensembl Acc Id:

ENSRNOP00000020175 ⟸ ENSRNOT00000020175

Ensembl Acc Id:

ENSRNOP00000094704 ⟸ ENSRNOT00000094105

Ensembl Acc Id:

ENSRNOP00000081777 ⟸ ENSRNOT00000105556

Protein Domains

EamA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M2H9-F1-model_v2	AlphaFold	F1M2H9	1-456	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561109	AgrOrtholog
BioCyc Gene	G2FUF-14104	BioCyc
Ensembl Genes	ENSRNOG00000014982	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020175	ENTREZGENE
	ENSRNOT00000020175.10	UniProtKB/TrEMBL
	ENSRNOT00000094105.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3730.20	UniProtKB/TrEMBL
InterPro	EamA_dom	UniProtKB/TrEMBL
	Solute_c_fam_35_mem_F3/F4	UniProtKB/TrEMBL
KEGG Report	rno:305865	UniProtKB/TrEMBL
NCBI Gene	305865	ENTREZGENE
PANTHER	PTHR19346	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 35 MEMBER F4	UniProtKB/TrEMBL
Pfam	EamA	UniProtKB/TrEMBL
PhenoGen	Slc35f4	PhenoGen
RatGTEx	ENSRNOG00000014982	RatGTEx
Superfamily-SCOP	Multidrug resistance efflux transporter EmrE	UniProtKB/TrEMBL
UniProt	A0A8I6AIA8_RAT	UniProtKB/TrEMBL
	F1M2H9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Slc35f4	solute carrier family 35, member F4	RGD1561109_predicted	similar to solute carrier family 35, member F3 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561109_predicted	similar to solute carrier family 35, member F3 (predicted)	LOC305865	similar to solute carrier family 35, member F3	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC305865	similar to solute carrier family 35, member F3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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