Rpl34l1 (ribosomal protein L34 like 1) - Rat Genome Database

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Gene: Rpl34l1 (ribosomal protein L34 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl34l1
Name: ribosomal protein L34 like 1 (Ensembl:ribosomal protein L34-like1)
RGD ID: 1561086
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN ribonucleoprotein complex (inferred); ribosome (inferred); INTERACTS WITH ammonium chloride
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L34-like; LOC296870; RGD1561086; ribosomal protein L34; ribosomal protein L34-like 1; ribosomal protein L34-like1; Rpl34; similar to ribosomal protein L34
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X66,181,135 - 66,181,559 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX66,181,135 - 66,181,544 (+)EnsemblGRCr8
GRCr8 Ensembl1779,783,869 - 79,820,922 (+)EnsemblGRCr8
mRatBN7.2X62,169,797 - 62,170,221 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X66,500,604 - 66,500,967 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X67,330,033 - 67,330,446 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X84,948,822 - 84,949,172 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX62,568,167 - 62,568,530 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl34l1
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X6103585667175160Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
sensory system
visual system
2 2 2 2 2 1 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000057895   ⟹   ENSRNOP00000054703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,783,869 - 79,820,922 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000147098   ⟹   ENSRNOP00000103912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX66,181,135 - 66,181,544 (+)Ensembl
RefSeq Acc Id: NM_001408840   ⟹   NP_001395769
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X66,181,135 - 66,181,559 (+)NCBI
mRatBN7.2X62,169,797 - 62,170,221 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395769 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000054703.2
  ENSRNOP00000103912
  ENSRNOP00000103912.1
RefSeq Acc Id: NP_001395769   ⟸   NM_001408840
- UniProtKB: D4A4W9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103912   ⟸   ENSRNOT00000147098
Ensembl Acc Id: ENSRNOP00000054703   ⟸   ENSRNOT00000057895

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2176 BioCyc
Ensembl Genes ENSRNOG00000038045 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000073776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057895.6 UniProtKB/TrEMBL
  ENSRNOT00000147098 ENTREZGENE
  ENSRNOT00000147098.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.340.10 UniProtKB/TrEMBL
  6.20.370.70 UniProtKB/TrEMBL
InterPro Ribosomal_eL34 UniProtKB/TrEMBL
  Ribosomal_eL34_C_sf UniProtKB/TrEMBL
  Ribosomal_eL34_CS UniProtKB/TrEMBL
NCBI Gene 296870 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L34 UniProtKB/TrEMBL
Pfam Ribosomal_L34e UniProtKB/TrEMBL
PhenoGen Rpl34l1 PhenoGen
PRINTS RIBOSOMALL34 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L34E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038045 RatGTEx
  ENSRNOG00000073776 RatGTEx
UniProt A0ABK0LGF5_RAT UniProtKB/TrEMBL
  D4A4W9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-01-27 Rpl34l1  ribosomal protein L34 like 1  Rpl34l1  ribosomal protein L34-like1  Name changed 629549 APPROVED
2013-01-29 Rpl34l1  ribosomal protein L34-like1  Rpl34  ribosomal protein L34  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-23 Rpl34  ribosomal protein L34  Rpl34l1  ribosomal protein L34-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-22 Rpl34l1  ribosomal protein L34-like 1  RGD1561086  similar to ribosomal protein L34  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561086  similar to ribosomal protein L34   RGD1561086_predicted  similar to ribosomal protein L34 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561086_predicted  similar to ribosomal protein L34 (predicted)  LOC296870  similar to ribosomal protein L34  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC296870  similar to ribosomal protein L34      Symbol and Name status set to provisional 70820 PROVISIONAL