Myoz1 (myozenin 1) - Rat Genome Database

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Gene: Myoz1 (myozenin 1) Rattus norvegicus
Analyze
Symbol: Myoz1
Name: myozenin 1
RGD ID: 1561064
Description: Predicted to enable cytoskeletal protein binding activity; molecular condensate scaffold activity; and protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in several processes, including negative regulation of calcineurin-NFAT signaling cascade; negative regulation of skeletal muscle tissue regeneration; and sarcomere organization. Predicted to act upstream of or within with a positive effect on skeletal muscle fiber adaptation. Predicted to be active in Z disc and actin cytoskeleton. Orthologous to human MYOZ1 (myozenin 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC498440; myozenin-1; RGD1561064; similar to myozenin 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,693,576 - 3,700,831 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl153,693,613 - 3,700,826 (+)EnsemblGRCr8
mRatBN7.2153,644,333 - 3,651,584 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,644,368 - 3,652,884 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx153,654,546 - 3,661,760 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,041,019 - 5,048,233 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,653,355 - 3,660,569 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,077,066 - 4,084,306 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,077,091 - 4,084,314 (+)Ensemblrn6Rnor6.0
Rnor_5.0158,178,295 - 8,185,524 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4153,869,805 - 3,877,019 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera15942,624 - 949,838 (-)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IBA,IEA,ISO)
Z disc  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10984498   PMID:11114196   PMID:18846255   PMID:25559982  


Genomics

Comparative Map Data
Myoz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,693,576 - 3,700,831 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl153,693,613 - 3,700,826 (+)EnsemblGRCr8
mRatBN7.2153,644,333 - 3,651,584 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,644,368 - 3,652,884 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx153,654,546 - 3,661,760 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,041,019 - 5,048,233 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,653,355 - 3,660,569 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,077,066 - 4,084,306 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,077,091 - 4,084,314 (+)Ensemblrn6Rnor6.0
Rnor_5.0158,178,295 - 8,185,524 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4153,869,805 - 3,877,019 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera15942,624 - 949,838 (-)NCBICelera
Cytogenetic Map15p16NCBI
MYOZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,631,612 - 73,641,474 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,631,571 - 73,642,103 (-)Ensemblhg38GRCh38
GRCh371075,391,370 - 75,401,232 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361075,061,418 - 75,071,521 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341075,061,419 - 75,071,521NCBI
Celera1068,677,011 - 68,687,110 (-)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1069,384,883 - 69,395,024 (-)NCBIHuRef
CHM1_11075,673,121 - 75,683,266 (-)NCBICHM1_1
T2T-CHM13v2.01074,503,036 - 74,512,896 (-)NCBIT2T-CHM13v2.0
Myoz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,699,170 - 20,706,608 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,699,175 - 20,706,608 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381420,649,102 - 20,656,540 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,649,107 - 20,656,540 (-)Ensemblmm10GRCm38
MGSCv371421,468,324 - 21,475,762 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361419,437,659 - 19,454,648 (-)NCBIMGSCv36mm8
Celera1417,031,813 - 17,039,282 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.53NCBI
Myoz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,191,242 - 18,199,188 (+)Ensembl
ChiLan1.0NW_00495543718,191,514 - 18,199,122 (+)NCBIChiLan1.0ChiLan1.0
MYOZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2885,807,514 - 85,823,339 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11085,812,778 - 85,828,663 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01070,179,020 - 70,194,885 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11072,635,720 - 72,651,508 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,635,720 - 72,645,602 (-)EnsemblpanPan2panpan1.1
MYOZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1424,158,532 - 24,165,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl424,158,720 - 24,165,392 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha424,296,555 - 24,301,720 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0424,438,848 - 24,445,544 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl424,438,848 - 24,445,518 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1424,336,336 - 24,341,566 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0424,536,907 - 24,542,070 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,891,925 - 24,897,089 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Myoz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721356,923,471 - 56,935,741 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365215,420,317 - 5,428,466 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365215,420,553 - 5,428,470 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1476,444,557 - 76,452,799 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11476,445,109 - 76,453,014 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,571,968 - 82,581,152 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYOZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1957,649,829 - 57,660,148 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl957,650,298 - 57,660,345 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604818,222,250 - 18,237,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myoz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247547,236,782 - 7,243,635 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247547,236,756 - 7,243,659 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Myoz1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11290,454,616 - 90,462,040 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Myoz1
48 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:90
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000011554
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
1300142Bp191Blood pressure QTL 1913.14arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)15115177511Rat

Markers in Region
RH134270  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,651,283 - 3,651,495 (+)MAPPERmRatBN7.2
Rnor_6.0154,084,006 - 4,084,217NCBIRnor6.0
Rnor_5.0158,185,224 - 8,185,435UniSTSRnor5.0
RGSC_v3.4153,876,720 - 3,876,931UniSTSRGSC3.4
Celera15942,712 - 942,923UniSTS
RH 3.4 Map1546.7UniSTS
Cytogenetic Map15p16UniSTS
Myoz1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,645,542 - 3,647,222 (+)MAPPERmRatBN7.2
Rnor_6.0154,078,265 - 4,079,944NCBIRnor6.0
Rnor_5.0158,179,483 - 8,181,162UniSTSRnor5.0
RGSC_v3.4153,870,979 - 3,872,658UniSTSRGSC3.4
Celera15946,985 - 948,664UniSTS
Cytogenetic Map15p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 12 66 89 89 88 57 25 57 6 264 124 11 61 64 92 31 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011554   ⟹   ENSRNOP00000011554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl153,693,613 - 3,700,826 (+)Ensembl
mRatBN7.2 Ensembl153,644,368 - 3,652,884 (+)Ensembl
Rnor_6.0 Ensembl154,077,091 - 4,084,305 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085266   ⟹   ENSRNOP00000070869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,645,234 - 3,652,884 (+)Ensembl
Rnor_6.0 Ensembl154,077,951 - 4,084,314 (+)Ensembl
RefSeq Acc Id: NM_001109097   ⟹   NP_001102567
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,693,613 - 3,700,831 (+)NCBI
mRatBN7.2153,644,369 - 3,651,583 (+)NCBI
Rnor_6.0154,077,091 - 4,084,305 (+)NCBI
Rnor_5.0158,178,295 - 8,185,524 (+)NCBI
RGSC_v3.4153,869,805 - 3,877,019 (+)RGD
Celera15942,624 - 949,838 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251655   ⟹   XP_006251717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,693,576 - 3,700,828 (+)NCBI
mRatBN7.2153,644,333 - 3,651,584 (+)NCBI
Rnor_6.0154,077,066 - 4,084,306 (+)NCBI
Rnor_5.0158,178,295 - 8,185,524 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102567 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251717 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL86237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011554
  ENSRNOP00000011554.5
RefSeq Acc Id: NP_001102567   ⟸   NM_001109097
- UniProtKB: D4A7U8 (UniProtKB/TrEMBL),   A6KKP3 (UniProtKB/TrEMBL),   A0A0G2JZ11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251717   ⟸   XM_006251655
- Peptide Label: isoform X1
- UniProtKB: D4A7U8 (UniProtKB/TrEMBL),   A6KKP3 (UniProtKB/TrEMBL),   A0A0G2JZ11 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011554   ⟸   ENSRNOT00000011554
Ensembl Acc Id: ENSRNOP00000070869   ⟸   ENSRNOT00000085266

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZ11-F1-model_v2 AlphaFold A0A0G2JZ11 1-310 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699562
Promoter ID:EPDNEW_R10086
Type:multiple initiation site
Name:Myoz1_1
Description:myozenin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0154,077,091 - 4,077,151EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561064 AgrOrtholog
BioCyc Gene G2FUF-14550 BioCyc
Ensembl Genes ENSRNOG00000040122 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011554 ENTREZGENE
  ENSRNOT00000011554.8 UniProtKB/TrEMBL
InterPro Calsarcin-bd UniProtKB/TrEMBL
KEGG Report rno:498440 UniProtKB/TrEMBL
NCBI Gene 498440 ENTREZGENE
PANTHER Calsarcin_bd UniProtKB/TrEMBL
  MYOZENIN-1 UniProtKB/TrEMBL
Pfam Calsarcin UniProtKB/TrEMBL
PhenoGen Myoz1 PhenoGen
RatGTEx ENSRNOG00000040122 RatGTEx
UniProt A0A0G2JZ11 ENTREZGENE
  A6KKP3 ENTREZGENE, UniProtKB/TrEMBL
  D4A7U8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Myoz1  myozenin 1  RGD1561064_predicted  similar to myozenin 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561064_predicted  similar to myozenin 1 (predicted)  LOC498440  similar to myozenin 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498440  similar to myozenin 1      Symbol and Name status set to provisional 70820 PROVISIONAL