Ftsj1 (FtsJ RNA 2'-O-methyltransferase 1) - Rat Genome Database

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Gene: Ftsj1 (FtsJ RNA 2'-O-methyltransferase 1) Rattus norvegicus
Analyze
Symbol: Ftsj1
Name: FtsJ RNA 2'-O-methyltransferase 1
RGD ID: 1561061
Description: Predicted to enable S-adenosyl-L-methionine binding activity; tRNA (guanosine(34)-2'-O)-methyltransferase activity; and tRNA 2'-O-methyltransferase activity. Predicted to be involved in cytoplasmic translation; neurogenesis; and wobble position ribose methylation. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 9. Orthologous to human FTSJ1 (FtsJ RNA 2'-O-methyltransferase 1); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: Ftsj homolog 1; Ftsj homolog 1 (E. coli); FtsJ RNA methyltransferase homolog 1; FtsJ RNA methyltransferase homolog 1 (E. coli); LOC363450; putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; RGD1561061; similar to Ftsj homolog; tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X16,915,087 - 16,929,426 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX16,916,033 - 16,923,999 (+)EnsemblGRCr8
mRatBN7.2X14,243,684 - 14,256,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,244,050 - 14,252,030 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX19,057,564 - 19,065,533 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X21,017,549 - 21,025,518 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X17,282,756 - 17,290,725 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,993,685 - 15,006,010 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,994,016 - 15,002,074 (+)Ensemblrn6Rnor6.0
Rnor_5.0X15,777,547 - 15,796,124 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X26,275,183 - 26,282,960 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX14,329,203 - 14,341,462 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA,ISO)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25404562   PMID:26310293  


Genomics

Comparative Map Data
Ftsj1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X16,915,087 - 16,929,426 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX16,916,033 - 16,923,999 (+)EnsemblGRCr8
mRatBN7.2X14,243,684 - 14,256,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,244,050 - 14,252,030 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX19,057,564 - 19,065,533 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X21,017,549 - 21,025,518 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X17,282,756 - 17,290,725 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,993,685 - 15,006,010 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,994,016 - 15,002,074 (+)Ensemblrn6Rnor6.0
Rnor_5.0X15,777,547 - 15,796,124 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X26,275,183 - 26,282,960 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX14,329,203 - 14,341,462 (+)NCBICelera
Cytogenetic MapXq12NCBI
FTSJ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,476,199 - 48,486,364 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,476,021 - 48,486,364 (+)Ensemblhg38GRCh38
GRCh37X48,334,409 - 48,344,752 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,219,493 - 48,229,696 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X48,090,802 - 48,101,006NCBI
CeleraX53,320,980 - 53,331,186 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX45,998,280 - 46,007,952 (+)NCBIHuRef
CHM1_1X48,365,806 - 48,376,012 (+)NCBICHM1_1
T2T-CHM13v2.0X47,885,205 - 47,895,371 (+)NCBIT2T-CHM13v2.0
Ftsj1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X8,104,907 - 8,118,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX8,104,907 - 8,118,645 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X8,238,668 - 8,252,406 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX8,238,668 - 8,252,406 (-)Ensemblmm10GRCm38
MGSCv37X7,815,794 - 7,829,532 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X7,395,627 - 7,409,365 (-)NCBIMGSCv36mm8
CeleraX3,217,509 - 3,231,274 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.73NCBI
Ftsj1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495554340,728 - 53,111 (+)Ensembl
ChiLan1.0NW_00495554342,524 - 49,835 (+)NCBIChiLan1.0ChiLan1.0
FTSJ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,964,713 - 49,974,871 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,968,085 - 49,978,246 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,774,056 - 40,784,290 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,638,454 - 48,648,779 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,638,454 - 48,648,779 (+)EnsemblpanPan2panpan1.1
FTSJ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,725,101 - 41,734,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,725,130 - 41,734,378 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX16,101,306 - 16,110,740 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,861,225 - 41,870,660 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,861,327 - 41,870,660 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,848,179 - 41,857,613 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,836,459 - 41,845,894 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,930,031 - 41,939,465 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ftsj1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,213,322 - 34,226,036 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721453,790 - 466,360 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936721453,789 - 466,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FTSJ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,609,771 - 42,620,284 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X42,609,560 - 42,620,198 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,678,181 - 47,683,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FTSJ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,606,922 - 45,617,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX45,606,948 - 45,617,212 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607611,047,478 - 11,068,760 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ftsj1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893299,020 - 303,773 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624893297,312 - 308,772 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ftsj1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X15,651,557 - 15,659,192 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ftsj1
208 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:80
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000006365
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat

Markers in Region
RH134060  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X16,922,178 - 16,922,675 (+)Marker Load Pipeline
mRatBN7.2X14,250,210 - 14,250,707 (+)MAPPERmRatBN7.2
Rnor_6.0X15,000,184 - 15,000,680NCBIRnor6.0
Rnor_5.0X15,783,747 - 15,784,243UniSTSRnor5.0
RGSC_v3.4X26,281,303 - 26,281,799UniSTSRGSC3.4
CeleraX14,335,702 - 14,336,198UniSTS
Cytogenetic MapXq13UniSTS
BF405823  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X14,247,232 - 14,247,396 (+)MAPPERmRatBN7.2
Rnor_6.0X14,997,206 - 14,997,369NCBIRnor6.0
Rnor_5.0X15,780,769 - 15,780,932UniSTSRnor5.0
RGSC_v3.4X26,278,325 - 26,278,488UniSTSRGSC3.4
CeleraX14,332,724 - 14,332,887UniSTS
RH 3.4 MapX126.7UniSTS
Cytogenetic MapXq13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 13 67 175 91 90 59 99 59 6 373 200 13 157 84 92 31 23 23

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006365   ⟹   ENSRNOP00000006365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX16,916,033 - 16,923,999 (+)Ensembl
mRatBN7.2 EnsemblX14,244,050 - 14,252,030 (+)Ensembl
Rnor_6.0 EnsemblX14,994,016 - 15,002,074 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100380   ⟹   ENSRNOP00000088344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX16,916,033 - 16,923,999 (+)Ensembl
mRatBN7.2 EnsemblX14,244,050 - 14,252,030 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000162482   ⟹   ENSRNOP00000110433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX16,916,033 - 16,923,281 (+)Ensembl
RefSeq Acc Id: NM_001401165   ⟹   NP_001388094
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,916,033 - 16,924,008 (+)NCBI
mRatBN7.2X14,244,065 - 14,252,040 (+)NCBI
RefSeq Acc Id: NM_001401166   ⟹   NP_001388095
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,916,033 - 16,924,008 (+)NCBI
mRatBN7.2X14,244,065 - 14,252,040 (+)NCBI
RefSeq Acc Id: XM_006256749   ⟹   XP_006256811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,920 - 16,924,008 (+)NCBI
mRatBN7.2X14,243,937 - 14,250,781 (+)NCBI
Rnor_6.0X14,993,806 - 15,000,754 (+)NCBI
Rnor_5.0X15,777,547 - 15,796,124 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256750   ⟹   XP_006256812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,920 - 16,929,426 (+)NCBI
mRatBN7.2X14,243,937 - 14,256,555 (+)NCBI
Rnor_6.0X14,993,806 - 15,006,009 (+)NCBI
Rnor_5.0X15,777,547 - 15,796,124 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773086   ⟹   XP_008771308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,087 - 16,924,008 (+)NCBI
mRatBN7.2X14,244,275 - 14,251,862 (+)NCBI
Rnor_6.0X14,994,239 - 15,000,756 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773087   ⟹   XP_008771309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,921 - 16,924,008 (+)NCBI
mRatBN7.2X14,243,942 - 14,251,862 (+)NCBI
Rnor_6.0X14,993,804 - 15,000,756 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773088   ⟹   XP_008771310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,670 - 16,924,008 (+)NCBI
mRatBN7.2X14,243,684 - 14,251,862 (+)NCBI
Rnor_6.0X14,993,685 - 15,000,756 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773091   ⟹   XP_008771313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,905 - 16,924,008 (+)NCBI
mRatBN7.2X14,243,918 - 14,251,862 (+)NCBI
Rnor_6.0X14,993,803 - 15,000,756 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100462   ⟹   XP_038956390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,969 - 16,924,008 (+)NCBI
mRatBN7.2X14,244,002 - 14,251,862 (+)NCBI
RefSeq Acc Id: XM_039100465   ⟹   XP_038956393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,966 - 16,924,008 (+)NCBI
mRatBN7.2X14,244,002 - 14,251,862 (+)NCBI
RefSeq Acc Id: XM_039100466   ⟹   XP_038956394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,917,179 - 16,924,008 (+)NCBI
mRatBN7.2X14,245,200 - 14,251,862 (+)NCBI
RefSeq Acc Id: XM_039100467   ⟹   XP_038956395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,917,664 - 16,924,008 (+)NCBI
mRatBN7.2X14,245,696 - 14,251,862 (+)NCBI
RefSeq Acc Id: XM_063280117   ⟹   XP_063136187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X16,915,675 - 16,924,008 (+)NCBI
RefSeq Acc Id: XP_006256812   ⟸   XM_006256750
- Peptide Label: isoform X1
- UniProtKB: D3ZZA1 (UniProtKB/TrEMBL),   A0A8I6A982 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256811   ⟸   XM_006256749
- Peptide Label: isoform X1
- UniProtKB: D3ZZA1 (UniProtKB/TrEMBL),   A0A8I6A982 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771310   ⟸   XM_008773088
- Peptide Label: isoform X1
- UniProtKB: D3ZZA1 (UniProtKB/TrEMBL),   A0A8I6A982 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771313   ⟸   XM_008773091
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A982 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771308   ⟸   XM_008773086
- Peptide Label: isoform X1
- UniProtKB: D3ZZA1 (UniProtKB/TrEMBL),   A0A8I6A982 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771309   ⟸   XM_008773087
- Peptide Label: isoform X1
- UniProtKB: D3ZZA1 (UniProtKB/TrEMBL),   A0A8I6A982 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006365   ⟸   ENSRNOT00000006365
RefSeq Acc Id: XP_038956390   ⟸   XM_039100462
- Peptide Label: isoform X1
- UniProtKB: D3ZZA1 (UniProtKB/TrEMBL),   A0A8I6A982 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956393   ⟸   XM_039100465
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A982 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956394   ⟸   XM_039100466
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038956395   ⟸   XM_039100467
- Peptide Label: isoform X6
- UniProtKB: A6KP37 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000088344   ⟸   ENSRNOT00000100380
RefSeq Acc Id: NP_001388095   ⟸   NM_001401166
- UniProtKB: A0A8I6A982 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388094   ⟸   NM_001401165
- UniProtKB: A0A8I6A982 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136187   ⟸   XM_063280117
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A982 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110433   ⟸   ENSRNOT00000162482
Protein Domains
Mononegavirus-type SAM-dependent 2'-O-MTase   Ribosomal RNA methyltransferase FtsJ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZA1-F1-model_v2 AlphaFold D3ZZA1 1-324 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701732
Promoter ID:EPDNEW_R12250
Type:initiation region
Name:Ftsj1_1
Description:FtsJ RNA methyltransferase homolog 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X14,994,093 - 14,994,153EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561061 AgrOrtholog
BioCyc Gene G2FUF-2954 BioCyc
BioCyc Pathway PWY-6829 [tRNA methylation (yeast)] BioCyc
BioCyc Pathway Image PWY-6829 BioCyc
Ensembl Genes ENSRNOG00000004776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006365 ENTREZGENE
  ENSRNOT00000006365.8 UniProtKB/TrEMBL
  ENSRNOT00000100380 ENTREZGENE
  ENSRNOT00000100380.2 UniProtKB/TrEMBL
  ENSRNOT00000162482 ENTREZGENE
  ENSRNOT00000162482.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Mononega_L_MeTrfase UniProtKB/TrEMBL
  RNA_methyltr_E_Trm7 UniProtKB/TrEMBL
  RNA_methyltr_RlmE UniProtKB/TrEMBL
  rRNA-MeTfrase_J UniProtKB/TrEMBL
  rRNA_MeTrfase_RrmJ/FtsJ UniProtKB/TrEMBL
  SAM-dependent_MTases-like UniProtKB/TrEMBL
NCBI Gene 363450 ENTREZGENE
PANTHER PTHR10920:SF12 UniProtKB/TrEMBL
  RIBOSOMAL RNA METHYLTRANSFERASE UniProtKB/TrEMBL
Pfam FtsJ UniProtKB/TrEMBL
PhenoGen Ftsj1 PhenoGen
PROSITE SAM_MT_MNV_L UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004776 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A8I6A982 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LVX9_RAT UniProtKB/TrEMBL
  A6KP37 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZA1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Ftsj1  FtsJ RNA 2'-O-methyltransferase 1  Ftsj1  FtsJ RNA methyltransferase homolog 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-08-22 Ftsj1  FtsJ RNA methyltransferase homolog 1  Ftsj1  FtsJ RNA methyltransferase homolog 1 (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-16 Ftsj1  FtsJ RNA methyltransferase homolog 1 (E. coli)  Ftsj1  Ftsj homolog 1 (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ftsj1  Ftsj homolog 1 (E. coli)   Ftsj1_predicted  Ftsj homolog 1 (E. coli) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ftsj1_predicted  Ftsj homolog 1 (E. coli) (predicted)  RGD1561061_predicted  similar to Ftsj homolog (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1561061_predicted  similar to Ftsj homolog (predicted)  LOC363450  similar to Ftsj homolog  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363450  similar to Ftsj homolog      Symbol and Name status set to provisional 70820 PROVISIONAL