Cldn12 (claudin 12) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cldn12 (claudin 12) Rattus norvegicus
Analyze
Symbol: Cldn12
Name: claudin 12
RGD ID: 1561053
Description: Predicted to be located in lateral plasma membrane and tight junction. Predicted to be active in plasma membrane. Orthologous to human CLDN12 (claudin 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: claudin-12; LOC500000; RGD1561053; similar to Claudin 12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8429,477,468 - 29,488,465 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl429,477,342 - 29,493,776 (+)EnsemblGRCr8
mRatBN7.2428,522,659 - 28,533,647 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl428,522,678 - 28,533,801 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx433,498,614 - 33,504,769 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0429,424,703 - 29,430,858 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0427,822,406 - 27,828,561 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0425,681,561 - 25,692,547 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl425,686,392 - 25,692,547 (+)Ensemblrn6Rnor6.0
Rnor_5.0425,588,737 - 25,599,715 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4425,213,105 - 25,219,260 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera423,972,077 - 23,978,232 (+)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16651389   PMID:18036336   PMID:19416898   PMID:20375010   PMID:27038183   PMID:30734065   PMID:31511021  


Genomics

Comparative Map Data
Cldn12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8429,477,468 - 29,488,465 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl429,477,342 - 29,493,776 (+)EnsemblGRCr8
mRatBN7.2428,522,659 - 28,533,647 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl428,522,678 - 28,533,801 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx433,498,614 - 33,504,769 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0429,424,703 - 29,430,858 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0427,822,406 - 27,828,561 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0425,681,561 - 25,692,547 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl425,686,392 - 25,692,547 (+)Ensemblrn6Rnor6.0
Rnor_5.0425,588,737 - 25,599,715 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4425,213,105 - 25,219,260 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera423,972,077 - 23,978,232 (+)NCBICelera
Cytogenetic Map4q13NCBI
CLDN12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38790,403,461 - 90,415,954 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl790,383,721 - 90,513,402 (+)Ensemblhg38GRCh38
GRCh37790,032,775 - 90,045,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36789,870,732 - 89,883,204 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34789,677,446 - 89,689,917NCBI
Celera784,736,780 - 84,749,336 (+)NCBICelera
Cytogenetic Map7q21.13NCBI
HuRef784,641,937 - 84,654,558 (+)NCBIHuRef
CHM1_1789,962,738 - 89,975,355 (+)NCBICHM1_1
T2T-CHM13v2.0791,651,753 - 91,664,246 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2789,363,457 - 89,376,077 (+)NCBI
Cldn12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3955,555,109 - 5,564,953 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl55,539,537 - 5,564,958 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3855,505,015 - 5,514,976 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl55,489,537 - 5,514,958 (-)Ensemblmm10GRCm38
MGSCv3755,505,015 - 5,514,976 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3655,511,115 - 5,520,879 (-)NCBIMGSCv36mm8
Celera55,452,774 - 5,463,060 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.98NCBI
Cldn12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554327,632,382 - 7,640,024 (+)Ensembl
ChiLan1.0NW_0049554327,632,382 - 7,640,024 (+)NCBIChiLan1.0ChiLan1.0
CLDN12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26108,304,729 - 108,465,052 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17156,569,380 - 156,629,561 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0782,417,687 - 82,430,167 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1796,018,822 - 96,109,646 (+)NCBIPanPan1.1PanPan1.1panPan2
CLDN12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11416,286,030 - 16,296,649 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1416,293,144 - 16,293,878 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1415,856,149 - 15,866,859 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01416,091,566 - 16,102,495 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1416,091,616 - 16,102,498 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11416,253,329 - 16,264,036 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01415,971,837 - 15,982,538 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01416,256,652 - 16,267,273 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cldn12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511829,715,745 - 29,725,146 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366213,645,296 - 3,652,849 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366213,643,518 - 3,652,899 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1970,499,770 - 70,510,082 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2976,998,242 - 77,008,539 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12158,517,093 - 58,530,471 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2158,519,624 - 58,520,358 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604245,682,524 - 45,708,727 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248092,845,411 - 2,854,367 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cldn12
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16137,756,844 - 137,760,699 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cldn12
125 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1071
Count of miRNA genes:345
Interacting mature miRNAs:474
Transcripts:ENSRNOT00000061199
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
RH130508  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2428,533,277 - 28,533,458 (+)MAPPERmRatBN7.2
Rnor_6.0425,692,178 - 25,692,358NCBIRnor6.0
Rnor_5.0425,599,346 - 25,599,526UniSTSRnor5.0
RGSC_v3.4425,218,891 - 25,219,071UniSTSRGSC3.4
Celera423,977,863 - 23,978,043UniSTS
RH 3.4 Map4170.0UniSTS
Cytogenetic Map4q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 91 59 6 355 191 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000061199   ⟹   ENSRNOP00000057913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl429,477,902 - 29,488,891 (+)Ensembl
mRatBN7.2 Ensembl428,522,857 - 28,533,642 (+)Ensembl
Rnor_6.0 Ensembl425,686,392 - 25,692,547 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095428   ⟹   ENSRNOP00000096834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl429,477,720 - 29,488,891 (+)Ensembl
mRatBN7.2 Ensembl428,522,678 - 28,533,801 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098574   ⟹   ENSRNOP00000084854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl429,477,342 - 29,493,654 (+)Ensembl
mRatBN7.2 Ensembl428,527,206 - 28,533,801 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111546   ⟹   ENSRNOP00000097194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl429,477,409 - 29,489,668 (+)Ensembl
mRatBN7.2 Ensembl428,522,696 - 28,533,642 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000140943   ⟹   ENSRNOP00000103179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl429,477,440 - 29,493,776 (+)Ensembl
RefSeq Acc Id: NM_001100813   ⟹   NP_001094283
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,482,310 - 29,488,465 (+)NCBI
mRatBN7.2428,527,492 - 28,533,647 (+)NCBI
Rnor_6.0425,686,392 - 25,692,547 (+)NCBI
Rnor_5.0425,588,737 - 25,599,715 (+)NCBI
RGSC_v3.4425,213,105 - 25,219,260 (+)RGD
Celera423,972,077 - 23,978,232 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236052   ⟹   XP_006236114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,477,468 - 29,488,465 (+)NCBI
mRatBN7.2428,522,659 - 28,533,647 (+)NCBI
Rnor_6.0425,681,561 - 25,692,547 (+)NCBI
Rnor_5.0425,588,737 - 25,599,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236053   ⟹   XP_006236115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,477,511 - 29,488,465 (+)NCBI
mRatBN7.2428,522,828 - 28,533,647 (+)NCBI
Rnor_6.0425,681,727 - 25,692,547 (+)NCBI
Rnor_5.0425,588,737 - 25,599,715 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001094283   ⟸   NM_001100813
- UniProtKB: D4A8Y0 (UniProtKB/TrEMBL),   A6K262 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236114   ⟸   XM_006236052
- Peptide Label: isoform X1
- UniProtKB: D4A8Y0 (UniProtKB/TrEMBL),   A6K262 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236115   ⟸   XM_006236053
- Peptide Label: isoform X1
- UniProtKB: D4A8Y0 (UniProtKB/TrEMBL),   A6K262 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057913   ⟸   ENSRNOT00000061199
Ensembl Acc Id: ENSRNOP00000097194   ⟸   ENSRNOT00000111546
Ensembl Acc Id: ENSRNOP00000096834   ⟸   ENSRNOT00000095428
Ensembl Acc Id: ENSRNOP00000084854   ⟸   ENSRNOT00000098574
Ensembl Acc Id: ENSRNOP00000103179   ⟸   ENSRNOT00000140943

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8Y0-F1-model_v2 AlphaFold D4A8Y0 1-244 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561053 AgrOrtholog
BioCyc Gene G2FUF-45793 BioCyc
Ensembl Genes ENSRNOG00000039862 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061199.4 UniProtKB/TrEMBL
  ENSRNOT00000095428 ENTREZGENE
  ENSRNOT00000095428.2 UniProtKB/TrEMBL
  ENSRNOT00000098574.2 UniProtKB/TrEMBL
  ENSRNOT00000111546.2 UniProtKB/TrEMBL
  ENSRNOT00000140943 ENTREZGENE
  ENSRNOT00000140943.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin12 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
KEGG Report rno:500000 UniProtKB/TrEMBL
NCBI Gene 500000 ENTREZGENE
PANTHER CLAUDIN-12 UniProtKB/TrEMBL
  PTHR16703 UniProtKB/TrEMBL
PhenoGen Cldn12 PhenoGen
PRINTS CLAUDIN12 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000039862 RatGTEx
UniProt A6K262 ENTREZGENE, UniProtKB/TrEMBL
  D4A8Y0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-09-27 Cldn12  claudin 12  RGD1561053_predicted  similar to Claudin 12 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561053_predicted  similar to Claudin 12 (predicted)  LOC500000  similar to Claudin 12  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500000  similar to Claudin 12      Symbol and Name status set to provisional 70820 PROVISIONAL