Spmip10 (sperm microtubule inner protein 10) - Rat Genome Database

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Gene: Spmip10 (sperm microtubule inner protein 10) Rattus norvegicus
Analyze
Symbol: Spmip10
Name: sperm microtubule inner protein 10
RGD ID: 1561039
Description: Predicted to be involved in flagellated sperm motility. Predicted to be active in axonemal B tubule inner sheath and sperm flagellum. Orthologous to human SPMIP10 (sperm microtubule inner protein 10); INTERACTS WITH 3-chloropropane-1,2-diol; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC498870; LOC498870; RGD1561039; similar to RIKEN cDNA 1700065I17; sperm associated microtubule inner protein 10; sperm-associated microtubule inner protein 10; testis expressed 43; testis-expressed protein 43; Tex43; uncharacterized protein LOC498870
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81852,268,703 - 52,272,037 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1852,268,665 - 52,272,041 (+)EnsemblGRCr8
mRatBN7.21850,070,610 - 50,073,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1850,070,610 - 50,073,942 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1852,108,961 - 52,112,318 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01852,817,020 - 52,820,346 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,614,833 - 50,618,186 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01851,679,768 - 51,683,102 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1851,679,768 - 51,683,102 (+)Ensemblrn6Rnor6.0
Rnor_5.01850,874,777 - 50,878,111 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41852,362,305 - 52,365,639 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1848,215,759 - 48,219,093 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Spmip10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81852,268,703 - 52,272,037 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1852,268,665 - 52,272,041 (+)EnsemblGRCr8
mRatBN7.21850,070,610 - 50,073,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1850,070,610 - 50,073,942 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1852,108,961 - 52,112,318 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01852,817,020 - 52,820,346 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,614,833 - 50,618,186 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01851,679,768 - 51,683,102 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1851,679,768 - 51,683,102 (+)Ensemblrn6Rnor6.0
Rnor_5.01850,874,777 - 50,878,111 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41852,362,305 - 52,365,639 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1848,215,759 - 48,219,093 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
SPMIP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385126,631,705 - 126,636,284 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5126,631,705 - 126,636,284 (+)Ensemblhg38GRCh38
GRCh375125,967,397 - 125,971,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365125,995,313 - 125,999,873 (+)NCBIBuild 36Build 36hg18NCBI36
Celera5121,924,031 - 121,928,585 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5121,158,855 - 121,163,415 (+)NCBIHuRef
CHM1_15125,400,032 - 125,404,579 (+)NCBICHM1_1
T2T-CHM13v2.05127,148,570 - 127,153,149 (+)NCBIT2T-CHM13v2.0
Spmip10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391856,720,690 - 56,727,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1856,721,422 - 56,727,854 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381856,587,609 - 56,594,783 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1856,588,350 - 56,594,782 (+)Ensemblmm10GRCm38
MGSCv371856,748,002 - 56,754,433 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361856,713,717 - 56,720,148 (+)NCBIMGSCv36mm8
Celera1857,893,358 - 57,899,784 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1830.66NCBI
Spmip10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555214,444,968 - 4,448,791 (+)Ensembl
ChiLan1.0NW_0049555214,444,948 - 4,448,702 (+)NCBIChiLan1.0ChiLan1.0
SPMIP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24121,943,844 - 121,951,943 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15120,083,407 - 120,091,504 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05122,036,540 - 122,041,382 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15127,808,143 - 127,812,790 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5127,808,143 - 127,812,790 (+)EnsemblpanPan2panpan1.1
SPMIP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11115,903,585 - 15,908,557 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1115,902,682 - 15,908,557 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1114,696,644 - 14,701,614 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01116,629,162 - 16,634,137 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1116,629,161 - 16,634,137 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11115,360,445 - 15,365,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,206,601 - 15,211,578 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,802,951 - 15,807,926 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Spmip10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213138,442,759 - 138,449,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650416,757 - 22,923 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650416,757 - 22,923 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPMIP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2129,726,961 - 129,731,452 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12129,726,789 - 129,731,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22135,025,489 - 135,029,885 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPMIP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12329,623,875 - 29,629,039 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2329,624,270 - 29,628,993 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603448,446,824 - 48,451,787 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmip10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477414,999,884 - 15,004,496 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Spmip10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11575,232,636 - 75,236,398 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Spmip10
32 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:26
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000039486
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184891705460064728Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050563968306Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183199089176990891Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184918722662647720Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)183337915878379158Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)183199089176990891Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)183337915878379158Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)183337915878379158Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)183337915878379158Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185079521286134022Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183152278376522783Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)183337915878379158Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183337915878379158Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)183337915878379158Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183161050577371277Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)183199089176990891Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183164450879484311Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)183199089176990891Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)185079521286134022Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183161050572538878Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)185219805968120379Rat

Markers in Region
D18Got50  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81852,266,869 - 52,267,023 (+)Marker Load Pipeline
mRatBN7.21850,068,772 - 50,068,930 (+)MAPPERmRatBN7.2
Rnor_6.01851,677,933 - 51,678,088NCBIRnor6.0
Rnor_5.01850,872,942 - 50,873,097UniSTSRnor5.0
RGSC_v3.41852,360,470 - 52,360,625UniSTSRGSC3.4
RGSC_v3.41852,360,469 - 52,360,623RGDRGSC3.4
Celera1848,213,932 - 48,214,079UniSTS
RGSC_v3.11852,405,964 - 52,406,118RGD
Cytogenetic Map18q12.1UniSTS
RH130750  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21850,069,527 - 50,069,708 (+)MAPPERmRatBN7.2
Rnor_6.01851,678,686 - 51,678,866NCBIRnor6.0
Rnor_5.01850,873,695 - 50,873,875UniSTSRnor5.0
RGSC_v3.41852,361,223 - 52,361,403UniSTSRGSC3.4
Celera1848,214,677 - 48,214,857UniSTS
Cytogenetic Map18q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 9 44 115 72 71 40 29 40 6 200 96 1 94 48 58 31 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000039486   ⟹   ENSRNOP00000033394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1852,268,665 - 52,272,041 (+)Ensembl
mRatBN7.2 Ensembl1850,070,610 - 50,073,942 (+)Ensembl
Rnor_6.0 Ensembl1851,679,768 - 51,683,102 (+)Ensembl
RefSeq Acc Id: NM_001109126   ⟹   NP_001102596
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,268,703 - 52,272,037 (+)NCBI
mRatBN7.21850,070,610 - 50,073,942 (+)NCBI
Rnor_6.01851,679,768 - 51,683,102 (+)NCBI
Rnor_5.01850,874,777 - 50,878,111 (+)NCBI
RGSC_v3.41852,362,305 - 52,365,639 (+)RGD
Celera1848,215,759 - 48,219,093 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102596 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM14496 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000033394
  ENSRNOP00000033394.3
RefSeq Acc Id: NP_001102596   ⟸   NM_001109126
- UniProtKB: D4AAL1 (UniProtKB/TrEMBL),   A6IX65 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033394   ⟸   ENSRNOT00000039486

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAL1-F1-model_v2 AlphaFold D4AAL1 1-148 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700791
Promoter ID:EPDNEW_R11315
Type:multiple initiation site
Name:Tex43_1
Description:testis expressed 43
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01851,679,773 - 51,679,833EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561039 AgrOrtholog
BioCyc Gene G2FUF-7443 BioCyc
Ensembl Genes ENSRNOG00000023034 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039486 ENTREZGENE
  ENSRNOT00000039486.5 UniProtKB/TrEMBL
InterPro DUF4513 UniProtKB/TrEMBL
KEGG Report rno:498870 UniProtKB/TrEMBL
NCBI Gene 498870 ENTREZGENE
PANTHER PTHR35247 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 43 UniProtKB/TrEMBL
Pfam DUF4513 UniProtKB/TrEMBL
PhenoGen Spmip10 PhenoGen
RatGTEx ENSRNOG00000023034 RatGTEx
UniProt A6IX65 ENTREZGENE, UniProtKB/TrEMBL
  D4AAL1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-25 Spmip10  sperm microtubule inner protein 10  Spmip10  sperm associated microtubule inner protein 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-05-05 Spmip10  sperm associated microtubule inner protein 10  Tex43  testis expressed 43  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-03-13 Tex43  testis expressed 43  RGD1561039  similar to RIKEN cDNA 1700065I17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561039  similar to RIKEN cDNA 1700065I17   RGD1561039_predicted  similar to RIKEN cDNA 1700065I17 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561039_predicted  similar to RIKEN cDNA 1700065I17 (predicted)  LOC498870  similar to RIKEN cDNA 1700065I17  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498870  similar to RIKEN cDNA 1700065I17      Symbol and Name status set to provisional 70820 PROVISIONAL