Pced1b (PC-esterase domain containing 1B) - Rat Genome Database

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Gene: Pced1b (PC-esterase domain containing 1B) Rattus norvegicus
Analyze
Symbol: Pced1b
Name: PC-esterase domain containing 1B
RGD ID: 1561028
Description: Orthologous to human PCED1B (PC-esterase domain containing 1B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fam113b; family with sequence similarity 113, member B; hypothetical protein LOC315283; LOC102551484; LOC315283; MGC124719; PC-esterase domain-containing protein 1B; RGD1561028; similar to MGC47262 protein; translation initiation factor IF-2-like; uncharacterized LOC102551484
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,273,531 - 130,451,727 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7130,270,554 - 130,410,365 (+)EnsemblGRCr8
mRatBN7.27128,394,388 - 128,528,231 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,391,319 - 128,528,231 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7130,191,814 - 130,325,394 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,417,346 - 132,550,921 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,361,405 - 132,463,291 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,707,426 - 138,846,127 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,707,426 - 138,846,123 (+)Ensemblrn6Rnor6.0
Rnor_5.07138,445,301 - 138,468,401 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47136,003,629 - 136,105,935 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7124,915,764 - 125,017,288 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Pced1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,273,531 - 130,451,727 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7130,270,554 - 130,410,365 (+)EnsemblGRCr8
mRatBN7.27128,394,388 - 128,528,231 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,391,319 - 128,528,231 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7130,191,814 - 130,325,394 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,417,346 - 132,550,921 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,361,405 - 132,463,291 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,707,426 - 138,846,127 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,707,426 - 138,846,123 (+)Ensemblrn6Rnor6.0
Rnor_5.07138,445,301 - 138,468,401 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47136,003,629 - 136,105,935 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7124,915,764 - 125,017,288 (+)NCBICelera
Cytogenetic Map7q36NCBI
PCED1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,079,621 - 47,236,660 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,077,945 - 47,236,664 (+)Ensemblhg38GRCh38
GRCh371247,473,404 - 47,630,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,896,319 - 45,916,710 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1246,407,103 - 46,427,485 (+)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1244,504,308 - 44,661,267 (+)NCBIHuRef
CHM1_11247,438,770 - 47,596,027 (+)NCBICHM1_1
T2T-CHM13v2.01247,040,396 - 47,197,436 (+)NCBIT2T-CHM13v2.0
Pced1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391597,143,563 - 97,283,574 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1597,144,988 - 97,283,561 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381597,246,973 - 97,385,693 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1597,247,107 - 97,385,680 (+)Ensemblmm10GRCm38
MGSCv371597,077,538 - 97,216,124 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361597,075,141 - 97,213,710 (+)NCBIMGSCv36mm8
Celera1599,413,319 - 99,523,000 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.91NCBI
Pced1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555006,278,897 - 6,280,228 (+)Ensembl
ChiLan1.0NW_0049555006,247,689 - 6,280,542 (+)NCBIChiLan1.0ChiLan1.0
PCED1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21046,930,899 - 47,087,757 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11246,926,849 - 47,084,391 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01241,496,557 - 41,653,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11242,369,326 - 42,371,238 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1242,369,622 - 42,370,920 (-)EnsemblpanPan2panpan1.1
PCED1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1277,352,609 - 7,380,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,928,297 - 38,943,326 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0277,420,426 - 7,448,744 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,433,663 - 7,574,336 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,368,670 - 7,377,427 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,397,821 - 7,425,926 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02739,171,283 - 39,186,314 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pced1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494567,849,712 - 67,913,670 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365125,291,567 - 5,315,118 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365125,291,516 - 5,315,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100626390
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115115,351,244 - 115,355,466 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215127,459,310 - 127,461,020 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCED1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11143,284,788 - 43,529,721 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1143,436,921 - 43,438,219 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037202,920,442 - 203,104,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pced1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248164,926,441 - 5,184,520 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pced1b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11270,115,327 - 270,216,232 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pced1b
1229 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:294
Count of miRNA genes:173
Interacting mature miRNAs:200
Transcripts:ENSRNOT00000037874
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D7Got132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23139,923,892 - 139,924,930 (+)MAPPERmRatBN7.2
mRatBN7.27128,457,900 - 128,458,049 (+)MAPPERmRatBN7.2
Rnor_6.07138,771,069 - 138,771,217NCBIRnor6.0
Rnor_6.03146,868,692 - 146,869,729NCBIRnor6.0
Rnor_5.07138,393,755 - 138,393,903UniSTSRnor5.0
Rnor_5.03153,221,969 - 153,223,006UniSTSRnor5.0
RGSC_v3.43141,742,236 - 141,743,273UniSTSRGSC3.4
RGSC_v3.47136,034,861 - 136,035,010RGDRGSC3.4
RGSC_v3.47136,034,862 - 136,035,010UniSTSRGSC3.4
Celera7124,947,348 - 124,947,511UniSTS
Celera3138,683,899 - 138,684,936UniSTS
RGSC_v3.17136,111,299 - 136,111,447RGD
RH 3.4 Map71096.2RGD
RH 3.4 Map71096.2UniSTS
RH 2.0 Map7781.9RGD
Cytogenetic Map7q35-q36UniSTS
BE101987  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,502,652 - 128,502,840 (+)MAPPERmRatBN7.2
Rnor_6.07138,818,058 - 138,818,245NCBIRnor6.0
Rnor_5.07138,442,968 - 138,443,155UniSTSRnor5.0
RGSC_v3.47136,079,476 - 136,079,663UniSTSRGSC3.4
Celera7124,991,696 - 124,991,883UniSTS
RH 3.4 Map71095.3UniSTS
Cytogenetic Map7q35-q36UniSTS
RH138777  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,528,034 - 128,528,191 (+)MAPPERmRatBN7.2
Rnor_6.07138,845,931 - 138,846,087NCBIRnor6.0
Rnor_5.07138,468,205 - 138,468,361UniSTSRnor5.0
RGSC_v3.47136,105,739 - 136,105,895UniSTSRGSC3.4
Celera7125,017,092 - 125,017,248UniSTS
RH 3.4 Map71096.0UniSTS
Cytogenetic Map7q35-q36UniSTS
AU049147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,457,905 - 128,458,045 (+)MAPPERmRatBN7.2
Rnor_6.07138,771,074 - 138,771,213NCBIRnor6.0
Rnor_5.07138,393,760 - 138,393,899UniSTSRnor5.0
RGSC_v3.47136,034,867 - 136,035,006UniSTSRGSC3.4
Celera7124,947,353 - 124,947,507UniSTS
Celera7124,947,353 - 124,947,465UniSTS
Cytogenetic Map7q35-q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 172 91 90 59 97 59 6 365 197 11 151 85 93 31 26 26

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC112322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000009199   ⟹   ENSRNOP00000009199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,270,554 - 130,410,365 (+)Ensembl
mRatBN7.2 Ensembl7128,391,319 - 128,528,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000037874   ⟹   ENSRNOP00000035198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,274,197 - 130,407,752 (+)Ensembl
mRatBN7.2 Ensembl7128,394,753 - 128,528,231 (+)Ensembl
Rnor_6.0 Ensembl7138,707,426 - 138,846,123 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098442   ⟹   ENSRNOP00000078186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,379,611 - 130,407,752 (+)Ensembl
mRatBN7.2 Ensembl7128,518,168 - 128,528,228 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105071   ⟹   ENSRNOP00000097051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,398,996 - 130,407,411 (+)Ensembl
mRatBN7.2 Ensembl7128,393,972 - 128,528,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107243   ⟹   ENSRNOP00000091999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,278,817 - 130,407,432 (+)Ensembl
mRatBN7.2 Ensembl7128,400,020 - 128,528,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109503   ⟹   ENSRNOP00000077090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,380,898 - 130,407,752 (+)Ensembl
mRatBN7.2 Ensembl7128,516,570 - 128,528,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110065   ⟹   ENSRNOP00000092537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,394,808 - 130,409,165 (+)Ensembl
mRatBN7.2 Ensembl7128,505,726 - 128,528,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111212   ⟹   ENSRNOP00000095524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,518,638 - 128,528,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118269   ⟹   ENSRNOP00000079128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,395,303 - 130,409,165 (+)Ensembl
mRatBN7.2 Ensembl7128,427,300 - 128,528,231 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145269   ⟹   ENSRNOP00000101099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,395,709 - 130,409,165 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167868   ⟹   ENSRNOP00000106810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7130,330,936 - 130,409,165 (+)Ensembl
RefSeq Acc Id: NM_001039454   ⟹   NP_001034543
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,940 - 130,407,364 (+)NCBI
mRatBN7.27128,394,794 - 128,528,231 (+)NCBI
Rnor_6.07138,707,426 - 138,846,127 (+)NCBI
Rnor_5.07138,445,301 - 138,468,401 (+)NCBI
RGSC_v3.47136,003,629 - 136,105,935 (+)RGD
Celera7124,915,764 - 125,017,288 (+)RGD
Sequence:
RefSeq Acc Id: XM_008765737   ⟹   XP_008763959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,397,194 - 130,407,352 (+)NCBI
mRatBN7.27128,518,060 - 128,528,231 (+)NCBI
Rnor_6.07138,835,723 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765738   ⟹   XP_008763960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,397,194 - 130,407,352 (+)NCBI
mRatBN7.27128,518,060 - 128,528,231 (+)NCBI
Rnor_6.07138,835,723 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765740   ⟹   XP_008763962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,531 - 130,407,352 (+)NCBI
mRatBN7.27128,394,388 - 128,528,231 (+)NCBI
Rnor_6.07138,820,464 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765742   ⟹   XP_008763964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,398,022 - 130,407,352 (+)NCBI
mRatBN7.27128,518,902 - 128,528,231 (+)NCBI
Rnor_6.07138,835,723 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063263660   ⟹   XP_063119730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,531 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263661   ⟹   XP_063119731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,531 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263662   ⟹   XP_063119732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,871 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263663   ⟹   XP_063119733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263664   ⟹   XP_063119734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,398,022 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263665   ⟹   XP_063119735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263666   ⟹   XP_063119736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263667   ⟹   XP_063119737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263668   ⟹   XP_063119738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,274,299 - 130,451,727 (+)NCBI
RefSeq Acc Id: NP_001034543   ⟸   NM_001039454
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008763962   ⟸   XM_008765740
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008763959   ⟸   XM_008765737
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y736 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763960   ⟸   XM_008765738
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008763964   ⟸   XM_008765742
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035198   ⟸   ENSRNOT00000037874
Ensembl Acc Id: ENSRNOP00000091999   ⟸   ENSRNOT00000107243
Ensembl Acc Id: ENSRNOP00000095524   ⟸   ENSRNOT00000111212
Ensembl Acc Id: ENSRNOP00000077090   ⟸   ENSRNOT00000109503
Ensembl Acc Id: ENSRNOP00000092537   ⟸   ENSRNOT00000110065
Ensembl Acc Id: ENSRNOP00000078186   ⟸   ENSRNOT00000098442
Ensembl Acc Id: ENSRNOP00000097051   ⟸   ENSRNOT00000105071
Ensembl Acc Id: ENSRNOP00000009199   ⟸   ENSRNOT00000009199
Ensembl Acc Id: ENSRNOP00000079128   ⟸   ENSRNOT00000118269
RefSeq Acc Id: XP_063119730   ⟸   XM_063263660
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119731   ⟸   XM_063263661
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119732   ⟸   XM_063263662
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119738   ⟸   XM_063263668
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063119733   ⟸   XM_063263663
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119735   ⟸   XM_063263665
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119736   ⟸   XM_063263666
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119737   ⟸   XM_063263667
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119734   ⟸   XM_063263664
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000106810   ⟸   ENSRNOT00000167868
Ensembl Acc Id: ENSRNOP00000101099   ⟸   ENSRNOT00000145269

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2M1K5-F1-model_v2 AlphaFold Q2M1K5 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695612
Promoter ID:EPDNEW_R6137
Type:multiple initiation site
Name:Pced1b_1
Description:PC-esterase domain containing 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07138,707,413 - 138,707,473EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561028 AgrOrtholog
BioCyc Gene G2FUF-32200 BioCyc
Ensembl Genes ENSRNOG00000022807 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009199 ENTREZGENE
  ENSRNOT00000009199.4 UniProtKB/Swiss-Prot
  ENSRNOT00000037874 ENTREZGENE
  ENSRNOT00000037874.6 UniProtKB/Swiss-Prot
  ENSRNOT00000105071 ENTREZGENE
  ENSRNOT00000105071.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107243.1 UniProtKB/Swiss-Prot
  ENSRNOT00000109503.1 UniProtKB/Swiss-Prot
  ENSRNOT00000110065 ENTREZGENE
  ENSRNOT00000110065.1 UniProtKB/Swiss-Prot
  ENSRNOT00000111212.1 UniProtKB/Swiss-Prot
  ENSRNOT00000118269.1 UniProtKB/Swiss-Prot
  ENSRNOT00000145269 ENTREZGENE
Gene3D-CATH 3.40.50.1110 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7936449 IMAGE-MGC_LOAD
InterPro SGNH_hydro_sf UniProtKB/Swiss-Prot
KEGG Report rno:315283 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124719 IMAGE-MGC_LOAD
NCBI Gene 315283 ENTREZGENE
PANTHER PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1B UniProtKB/Swiss-Prot
  SARCOMA ANTIGEN NY-SAR-23 UniProtKB/Swiss-Prot
PhenoGen Pced1b PhenoGen
RatGTEx ENSRNOG00000022807 RatGTEx
Superfamily-SCOP SGNH hydrolase UniProtKB/Swiss-Prot
UniProt A0A8I5Y736 ENTREZGENE, UniProtKB/TrEMBL
  PED1B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pced1b  PC-esterase domain containing 1B  LOC102551484  uncharacterized LOC102551484  Data merged from RGD:7669791 737654 PROVISIONAL
2013-12-18 LOC102551484  uncharacterized LOC102551484      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-16 Pced1b  PC-esterase domain containing 1B  Fam113b  family with sequence similarity 113, member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam113b  family with sequence similarity 113, member B  RGD1561028  similar to MGC47262 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 RGD1561028  similar to MGC47262 protein  LOC315283    Symbol updated 1299863 APPROVED
2006-02-09 LOC315283  similar to MGC47262 protein      Symbol and Name status set to provisional 70820 PROVISIONAL