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Gene: Cracr2b (calcium release activated channel regulator 2B) Rattus norvegicus

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Symbol:

Cracr2b

Name:

calcium release activated channel regulator 2B

RGD ID:

1560911

Description:

Predicted to enable calcium ion binding activity. Predicted to be involved in store-operated calcium entry. Orthologous to human CRACR2B (calcium release activated channel regulator 2B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

calcium release-activated channel regulator 2B; EF-hand calcium binding domain 4A; EF-hand calcium-binding domain-containing protein 4A; EF-hand calcium-binding domain-containing protein 4A-like; Efcab4a; LOC100911692; LOC309112; RGD1560911; similar to BC026645 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	205,987,957 - 205,993,515 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	205,990,507 - 205,993,516 (+)	Ensembl				GRCr8
mRatBN7.2	1	196,558,407 - 196,563,961 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	196,558,588 - 196,563,771 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	204,903,937 - 204,909,308 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	212,032,459 - 212,037,821 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	204,706,597 - 204,711,971 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	214,439,810 - 214,445,876 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,440,503 - 214,445,874 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,005,791 - 214,008,973 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	220,920,617 - 220,926,199 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	201,647,804 - 201,653,175 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	194,192,084 - 194,197,455 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5-triiodo-L-thyronine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetylsalicylic acid (ISO)

acrylamide (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

DDE (ISO)

diuron (EXP)

doxorubicin (ISO)

folic acid (ISO)

GSK-J4 (ISO)

lead(0) (ISO)

maleic acid (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

pirinixic acid (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sotorasib (ISO)

temozolomide (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

store-operated calcium entry (IEA,ISO,ISS)

Molecular Function

calcium ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:20418871

Genomics

Comparative Map Data

Cracr2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	205,987,957 - 205,993,515 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	205,990,507 - 205,993,516 (+)	Ensembl				GRCr8
mRatBN7.2	1	196,558,407 - 196,563,961 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	196,558,588 - 196,563,771 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	204,903,937 - 204,909,308 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	212,032,459 - 212,037,821 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	204,706,597 - 204,711,971 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	214,439,810 - 214,445,876 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,440,503 - 214,445,874 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,005,791 - 214,008,973 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	220,920,617 - 220,926,199 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	201,647,804 - 201,653,175 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	194,192,084 - 194,197,455 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

CRACR2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	826,157 - 831,991 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	826,144 - 831,993 (+)	Ensembl			hg38	GRCh38
GRCh37	11	827,919 - 831,991 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	817,585 - 821,991 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	894,861 - 898,627 (+)	NCBI		Celera
Cytogenetic Map	11	p15.5	NCBI
HuRef	11	642,852 - 647,258 (+)	NCBI		HuRef
CHM1_1	11	826,546 - 830,952 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	877,475 - 883,426 (+)	NCBI		T2T-CHM13v2.0

Cracr2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	141,041,007 - 141,046,526 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	141,041,007 - 141,046,526 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	141,460,875 - 141,466,613 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	141,461,094 - 141,466,613 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	148,646,993 - 148,652,501 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	141,312,463 - 141,317,933 (+)	NCBI		MGSCv36	mm8
Celera	7	141,254,886 - 141,260,393 (+)	NCBI		Celera
Cytogenetic Map	7	F5	NCBI
cM Map	7	86.82	NCBI

Cracr2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955476	11,299,614 - 11,303,657 (-)	Ensembl
ChiLan1.0	NW_004955476	11,299,353 - 11,304,105 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRACR2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	3,226,151 - 3,230,958 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	2,436,096 - 2,440,903 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	845,996 - 850,814 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	888,857 - 894,053 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	889,575 - 894,053 (+)	Ensembl			panPan2	panpan1.1

CRACR2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	45,188,527 - 45,194,077 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	45,190,250 - 45,194,038 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	43,855,476 - 43,861,081 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	45,853,437 - 45,859,041 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	45,855,553 - 45,859,002 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	45,319,036 - 45,323,792 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	44,883,025 - 44,888,623 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	45,621,151 - 45,626,754 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cracr2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	586,435 - 592,273 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936888	588,974 - 592,027 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936888	586,126 - 592,275 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRACR2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	518,544 - 524,081 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	518,102 - 524,085 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	150,256 - 155,848 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRACR2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	633,694 - 638,403 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	634,990 - 637,702 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	97,722,993 - 97,728,262 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cracr2b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	8,021,407 - 8,026,787 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cracr2b
46 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	177339686	222339686	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	181059071	226059071	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	181059071	226059071	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	182039247	227039247	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	183564652	228564652	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	160573753	210707719	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	181059071	226059071	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	160573753	210707719	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	165278545	210278545	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	181059071	226059071	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	161077990	206077990	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	168063662	213063662	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	159894717	207261263	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	163992710	208992710	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	182535316	227535316	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	181059071	226059071	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	160574007	235238518	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	181059071	226059071	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
1359018	Hrtrt20	Heart rate QTL 20	3.08		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	194786607	207590403	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	162753891	207753891	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	203300512	229359342	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	180739993	225739993	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	191190115	223964326	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	172718770	228180370	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631260	Tcas2	Tongue tumor susceptibility QTL 2	4.93		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	201915593	208479939	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	178547286	206690557	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	185979875	230979875	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	197807365	233480676	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	210707719	Rat
634338	Hcar4	Hepatocarcinoma resistance QTL 4	4.6		liver integrity trait (VT:0010547)	liver tumorous lesion number to liver area ratio (CMO:0001210)	1	202851915	223964440	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
6480783	Insul19	Insulin level QTL 19	4.33		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	203300512	213659238	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	165707719	210707719	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	173363824	227535316	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	191260175	236260175	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2325727	Pia41	Pristane induced arthritis QTL 41			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	188241285	233241285	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	210707719	Rat

Markers in Region

RH133487

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	196,557,567 - 196,557,761 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	214,439,483 - 214,439,676	NCBI	Rnor6.0
Rnor_6.0	1	214,002,577 - 214,002,770	NCBI	Rnor6.0
Rnor_5.0	1	220,919,806 - 220,919,999	UniSTS	Rnor5.0
Rnor_5.0	1	221,356,595 - 221,356,788	UniSTS	Rnor5.0
RGSC_v3.4	1	201,646,784 - 201,646,977	UniSTS	RGSC3.4
Celera	1	194,191,064 - 194,191,257	UniSTS
Cytogenetic Map	1	q41	UniSTS

RH137382

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	196,563,754 - 196,563,950 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	214,445,670 - 214,445,865	NCBI	Rnor6.0
Rnor_6.0	1	214,008,764 - 214,008,959	NCBI	Rnor6.0
Rnor_5.0	1	221,362,782 - 221,362,977	UniSTS	Rnor5.0
Rnor_5.0	1	220,925,993 - 220,926,188	UniSTS	Rnor5.0
RGSC_v3.4	1	201,652,971 - 201,653,166	UniSTS	RGSC3.4
Celera	1	194,197,251 - 194,197,446	UniSTS
RH 3.4 Map	1	1436.8	UniSTS
Cytogenetic Map	1	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	50	62	133	90	11	49	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC107652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025964 ⟹ ENSRNOP00000025964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	205,990,507 - 205,993,515 (+)	Ensembl
mRatBN7.2 Ensembl	1	196,558,588 - 196,563,771 (+)	Ensembl
Rnor_6.0 Ensembl	1	214,440,503 - 214,445,874 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000071831 ⟹ ENSRNOP00000066436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	205,990,507 - 205,993,515 (+)	Ensembl
mRatBN7.2 Ensembl	1	196,558,588 - 196,563,771 (+)	Ensembl
Rnor_6.0 Ensembl	1	214,005,791 - 214,008,973 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137177 ⟹ ENSRNOP00000109932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	205,990,507 - 205,993,516 (+)	Ensembl

RefSeq Acc Id:

NM_001127541 ⟹ NP_001121013

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,988,144 - 205,993,515 (+)	NCBI
mRatBN7.2	1	196,558,588 - 196,563,959 (+)	NCBI
Rnor_6.0	1	214,440,503 - 214,445,874 (+)	NCBI
Rnor_5.0	1	220,920,617 - 220,926,199 (+)	NCBI
RGSC_v3.4	1	201,647,804 - 201,653,175 (+)	RGD
Celera	1	194,192,084 - 194,197,455 (+)	RGD

Sequence:

show sequence

GTCCCCCAGCGCTTCTGCAGCCTGTGATAGCCAGGTCAGCTTTTCAGGAGTGCTGCTAACGTAT
GTCATTCTCTAGAGCTAAAACTCAGAAGACTCTTAAGTTGGAAAAGTATAGAGAAGAAAGTCTA
GTGTCCGCAGCCCTGGATACAGTCACTGAAACACCTATCGGAGCCAAGACTTGCTCTTATGGCC
AGCCCTGGGCCGCCTGGAGCTGGGCAGGGCCAGGAGGAAGAGGAGAGGGCAGGAGTCTCAGCAG
GACATCAAGCAGAGGTGCTGCAGCAGGCCCAGGAGCTCTTTGTCCTGTGTGACAAGGACGCCAA
GGGCTTCATCACTCGTCAGGATTTGCAGGGTCTGCAGAGTGATCTTCCCCTTACACCTGAACAG
CTGGAGGCTGTGTTTGAAAGTCTGGACCAGGCCCACACTGGCTTCTTGACAGCCCGGGAGTTCT
GTCTAGGCCTGGGGAAATTTGTGGGGGTGGAGTCGGTCCCAGGTAGAGCCCCCTTGAGGACACC
TGAGGAAACCTTTGAGTCGGGCACAGGGGGCTCTCTGGAGGAGGAGGACGATGTAGAAACATTC
TACACTTCCTTGGAGAAGCTAGGAGTGGCCCGGGTCCTGGGAGAGCAATGGGCTGTGAGGACAC
TCTGGGTCGGGCTGCAGCGGGAGCGACCCGAGCTGTTGGGTTCTCTAGAGGAAATTCTGATGCG
CGCATCCGCCTGCCTGGAGGCGGCGGCCCGGGAGCGCGACGGTCTGGAGCAGGCACTTCGGAGG
CGGGAGAGTGAACACGAGAGGGAGGTGCGCGGACTGTATGAAGAGCTGGAGCAGCAGCTTCGGG
AGCAGCGACAGCGCCGGCAGAGTCAGAACCCACCCCGGGAGGAAGAGAGGGGCCACCTGGAGCT
GGAGCTGCAGACCCGAGAGCAGGAGTTGGAGCGCGCAGCCCTGAGGCAGCGAGAGTTGGAACAG
CAGCTGCAAGCCCGGGCTGCAGAACAGCTAGAGGTACAAGCCCAGCACATCCAGTTGCAGAGGG
CCTATGAGGCCTTACGGGCACAGCTGGACCAGGCGCAAGAGCAGCTCATCCGACTGGAGGGCGA
AGCACAGGGTCGTCAGGAGCAAACCCAAAGAGATGTGGTTGCTGTCTCCAGGAACATGCAAAAA
GAGAAACTCAGCCTCCTAAGGCAGCTGGAGCTGCTGAGGGAGCTGAATCTGAGGCTTCGAGATG
AGAGAGATGCCTGTGAGACTAAGCTGCTGGGCAGTAGCCACAGGAAGGCTCTAGCTATCGCCCA
CAAGCCGGGACCTATCTACTGCTGCTGTTGTTGTGGCTGGGCTCGGCCCCCCAGACGAGGCTCT
GGCCATCTTCCTAGTGCCCGATGACCAGCCAGCCCCAAATGACTCACTTCCTTATCCAGAGGAC
TATTCTTAGGAGGGGATTGGTCTTGGGTGGCGGTTGCTTGCTAAGTATGTAGCTCTACCCAGAA
AGCATCCCATGCCTGAAGGAACTAACCCTCAGAGTGGTCAGGTCTTCAGTCTTTATCCTGTCTT
CCTTAATCTTTGTCTAAAGGACCAATAAAGGCCACTGTATACTGTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006230559 ⟹ XP_006230621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,988,804 - 205,993,515 (+)	NCBI
mRatBN7.2	1	196,559,040 - 196,563,961 (+)	NCBI
Rnor_6.0	1	214,439,810 - 214,445,876 (+)	NCBI
Rnor_5.0	1	220,920,617 - 220,926,199 (+)	NCBI

Sequence:

show sequence

CCCACACATCCGGTGACACAGTGAGTGAGGGTGTGGAGTTGACTTCAGGGCTGGATCCCTGTAA
AGGGTGAAGCGTCTGGAACTGAGGCCTGGGGACCAGGGAAGATCAGTTCCTGACCCACACTGGG
GCATCTCGCCCAGAACTCTGTGCTTGGCTTCTCTTTCGTGGTTGTCACATGCTTCATTACCAGG
AGCAGGTGCCTTTCCCTGTGCTGTAACCATACCTGCTTCCCACCAGAACCCTGGGAGGGGTCTG
GAGTACTGAGACAAGGTAGTGAGAGTTCACATGTCTTCCTGAAGCCTCCTGTGCTGTGTTTTGT
GTGTGTTGTAATAGTCTTGGAGGAAGGGGAACTGTGGGGGTGAGCTTAACTGTCCAGTTGTAGG
ACCTAGCTCAGTCCTACCAGCTCAGCACTCACTTGCCCCTCCCAAAGGGGTGGGCTTAGCTGTC
TATTTGTAGAACTTAGCCTAGTCCTAAGAGCTCAGCACCCACTTGCCCCTCCCAAAAGGTGCAC
AGTGGCTGCGGTTGCAGCCCCTAGCCAACAATAACGGTTGGTCTGGTTATGGGACCTGGGACAG
CAGGACTGGGCGAGCCGGCCAGGCAGGTCCTAGCCTAGGTGCCAGGGGCCGCCCCTCGTCTCCA
TGACCTGTGCTATATACAGCCAGCCTGCTGTGGTTCTGCTTGAGAAGCACAGAGTCCCCCAGCG
CTTCTGCAGCCTGTGATAGCCAGGTCAGCTTTTCAGGTCAGTTTAGGGGCTTGGTTGGGGGCAT
ACCCTTGGAAATAGATGGCTCTCCTAAGTAGGACTTTGGCAGCATCTTCTGAAGTTCTCTAGAC
CCAGGGGAGCCCTGATTAGGAATGTGCCCCAAGAGGGGTCCCCAGGGCAGACTGCTGAGGCCGT
TCACTGACTGGGTCCCACACTCACCTCTCTCACACAGGAGTGCTGCTAACGTATGTCATTCTCT
AGAGCTAAAACTCAGAAGACTCTTAAGTTGGAAAAGTATAGAGAAGAAAGTCTAGTGTCCGCAG
CCCTGGATACAGTCACTGAAAGTATTTGGTTTATTTCCTGCTCGGCATTTTCCTACACACACTT
CTTGGCACCCTAAGTCTGGATACTCCGGGCGGGGTAGGGGCTGGCATCTGAATCTCCCCGGTCT
TGATTTTGTCCTGAAAGGGTCTTGGGGGCTAGGGGAGGCGGTGGGAGTGAGGGACACGACGTCA
ACATTGCTGCCCCCAGTGGCTCTCCGGGGAGAACTAGCCACTCTGGGTCACCAGGACAGGAGAG
GCGGGACAAAGCTACTGCAGCACTCTGGTGGAGGATCCACCCGGACGTGCTAATCCAGGGTCTC
CCAGCCTGTAAGGCCGCAGGGTCGCTCTGGGTCCGCGCCCCTCGCGAGCTGTCGGGGTCCGGGC
AGGGGCGGGGCGCACCGCGCGTTTCCGGGAGGAGCGGCCGGCCTGCGGCAGGTGCGGCGGCGCG
GCGGCGCGGCTCGCAGCACCTATCGGAGCCAAGACTTGCTCTTATGGCCAGCCCTGGGCCGCCT
GGAGCTGGGCAGGGCCAGGAGGAAGAGGAGAGGGCAGGAGTCTCAGCAGGACATCAAGCAGAGG
TGCTGCAGCAGGCCCAGGAGCTCTTTGTCCTGTGTGACAAGGACGCCAAGGGCTTCATCACTCG
TCAGGATTTGCAGGGTCTGCAGAGTGATCTTCCCCTTACACCTGAACAGCTGGAGGCTGTGTTT
GAAAGTCTGGACCAGGCCCACACTGGCTTCTTGACAGCCCGGGAGTTCTGTCTAGGCCTGGGGA
AATTTGTGGGGGTGGAGTCGGTCCCAGGTAGAGCCCCCTTGAGGACACCTGAGGAAACCTTTGA
GTCGGGCACAGGGGGCTCTCTGGAGGAGGAGGACGATGTAGAAACATTCTACACTTCCTTGGAG
AAGCTAGGAGTGGCCCGGGTCCTGGGAGAGCAATGGGCTGTGAGGACACTCTGGGTCGGGCTGC
AGCGGGAGCGACCCGAGCTGTTGGGTTCTCTAGAGGAAATTCTGATGCGCGCATCCGCCTGCCT
GGAGGCGGCGGCCCGGGAGCGCGACGGTCTGGAGCAGGCACTTCGGAGGCGGGAGAGTGAACAC
GAGAGGGAGGTGCGCGGACTGTATGAAGAGCTGGAGCAGCAGCTTCGGGAGCAGCGACAGCGCC
GGCAGAGTCAGAACCCACCCCGGGAGGAAGAGAGGGGCCACCTGGAGCTGGAGCTGCAGACCCG
AGAGCAGGAGTTGGAGCGCGCAGCCCTGAGGCAGCGAGAGTTGGAACAGCAGCTGCAAGCCCGG
GCTGCAGAACAGCTAGAGGTACAAGCCCAGCACATCCAGTTGCAGAGGGCCTATGAGGCCTTAC
GGGCACAGCTGGACCAGGCGCAAGAGCAGCTCATCCGACTGGAGGGCGAAGCACAGGGTCGTCA
GGAGCAAACCCAAAGAGATGTGGTTGCTGTCTCCAGGAACATGCAAAAAGAGAAACTCAGCCTC
CTAAGGCAGCTGGAGCTGCTGAGGGAGCTGAATCTGAGGCTTCGAGATGAGAGAGATGCCTGTG
AGACTAAGCTGCTGGGCAGTAGCCACAGGAAGGCTCTAGCTATCGCCCACAAGCCGGGACCTAT
CTACTGCTGCTGTTGTTGTGGCTGGGCTCGGCCCCCCAGACGAGGCTCTGGCCATCTTCCTAGT
GCCCGATGACCAGCCAGCCACCAAATGACTCACTTCCTTATCCAGAGGACTATTCTTAGGAGGG
GATTGGTCTTGGGTGGCGGTTGCTTGCTAAGTATGTAGCTCTACCCAGAAAGCATCCCATGCCT
GAAGGAACTAACCCTCAGAGTGGTCAGGTCTTCAGTCTTTATCCTGTCTTCCTTAATCTTTGTC
TAAAGGACCAATAAAGGCCACTGTATACTGTGCA

hide sequence

RefSeq Acc Id:

XM_006230561 ⟹ XP_006230623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,987,957 - 205,993,515 (+)	NCBI
mRatBN7.2	1	196,558,407 - 196,563,961 (+)	NCBI
Rnor_6.0	1	214,439,810 - 214,445,876 (+)	NCBI
Rnor_5.0	1	220,920,617 - 220,926,199 (+)	NCBI

Sequence:

show sequence

CCCACACATCCGGTGACACAGTGAGTGAGGGTGTGGAGTTGACTTCAGGGCTGGATCCCTGTAA
AGGGTGAAGCGTCTGGAACTGAGGCCTGGGGACCAGGGAAGATCAGTTCCTGACCCACACTGGG
GCATCTCGCCCAGAACTCTGTGCTTGGCTTCTCTTTCGTGGTTGTCACATGCTTCATTACCAGG
AGCAGGTGCCTTTCCCTGTGCTGTAACCATACCTGCTTCCCACCAGAACCCTGGGAGGGGTCTG
GAGTACTGAGACAAGGTAGTGAGAGTTCACATGTCTTCCTGAAGCCTCCTGTGCTGTGTTTTGT
GTGTGTTGTAATAGTCTTGGAGGAAGGGGAACTGTGGGGGTGAGCTTAACTGTCCAGTTGTAGG
ACCTAGCTCAGTCCTACCAGCTCAGCACTCACTTGCCCCTCCCAAAGGGGTGGGCTTAGCTGTC
TATTTGTAGAACTTAGCCTAGTCCTAAGAGCTCAGCACCCACTTGCCCCTCCCAAAAGGTGCAC
AGTGGCTGCGGTTGCAGCCCCTAGCCAACAATAACGGTTGGTCTGGTTATGGGACCTGGGACAG
CAGGACTGGGCGAGCCGGCCAGGCAGGTCCTAGCCTAGGTGCCAGGGGCCGCCCCTCGTCTCCA
TGACCTGTGCTATATACAGCCAGCCTGCTGTGGTTCTGCTTGAGAAGCACAGAGTCCCCCAGCG
CTTCTGCAGCCTGTGATAGCCAGGTCAGCTTTTCAGCACCTATCGGAGCCAAGACTTGCTCTTA
TGGCCAGCCCTGGGCCGCCTGGAGCTGGGCAGGGCCAGGAGGAAGAGGAGAGGGCAGGAGTCTC
AGCAGGACATCAAGCAGAGGTGCTGCAGCAGGCCCAGGAGCTCTTTGTCCTGTGTGACAAGGAC
GCCAAGGGCTTCATCACTCGTCAGGATTTGCAGGGTCTGCAGAGTGATCTTCCCCTTACACCTG
AACAGCTGGAGGCTGTGTTTGAAAGTCTGGACCAGGCCCACACTGGCTTCTTGACAGCCCGGGA
GTTCTGTCTAGGCCTGGGGAAATTTGTGGGGGTGGAGTCGGTCCCAGGTAGAGCCCCCTTGAGG
ACACCTGAGGAAACCTTTGAGTCGGGCACAGGGGGCTCTCTGGAGGAGGAGGACGATGTAGAAA
CATTCTACACTTCCTTGGAGAAGCTAGGAGTGGCCCGGGTCCTGGGAGAGCAATGGGCTGTGAG
GACACTCTGGGTCGGGCTGCAGCGGGAGCGACCCGAGCTGTTGGGTTCTCTAGAGGAAATTCTG
ATGCGCGCATCCGCCTGCCTGGAGGCGGCGGCCCGGGAGCGCGACGGTCTGGAGCAGGCACTTC
GGAGGCGGGAGAGTGAACACGAGAGGGAGGTGCGCGGACTGTATGAAGAGCTGGAGCAGCAGCT
TCGGGAGCAGCGACAGCGCCGGCAGAGTCAGAACCCACCCCGGGAGGAAGAGAGGGGCCACCTG
GAGCTGGAGCTGCAGACCCGAGAGCAGGAGTTGGAGCGCGCAGCCCTGAGGCAGCGAGAGTTGG
AACAGCAGCTGCAAGCCCGGGCTGCAGAACAGCTAGAGGTACAAGCCCAGCACATCCAGTTGCA
GAGGGCCTATGAGGCCTTACGGGCACAGCTGGACCAGGCGCAAGAGCAGCTCATCCGACTGGAG
GGCGAAGCACAGGGTCGTCAGGAGCAAACCCAAAGAGATGTGGTTGCTGTCTCCAGGAACATGC
AAAAAGAGAAACTCAGCCTCCTAAGGCAGCTGGAGCTGCTGAGGGAGCTGAATCTGAGGCTTCG
AGATGAGAGAGATGCCTGTGAGACTAAGCTGCTGGGCAGTAGCCACAGGAAGGCTCTAGCTATC
GCCCACAAGCCGGGACCTATCTACTGCTGCTGTTGTTGTGGCTGGGCTCGGCCCCCCAGACGAG
GCTCTGGCCATCTTCCTAGTGCCCGATGACCAGCCAGCCACCAAATGACTCACTTCCTTATCCA
GAGGACTATTCTTAGGAGGGGATTGGTCTTGGGTGGCGGTTGCTTGCTAAGTATGTAGCTCTAC
CCAGAAAGCATCCCATGCCTGAAGGAACTAACCCTCAGAGTGGTCAGGTCTTCAGTCTTTATCC
TGTCTTCCTTAATCTTTGTCTAAAGGACCAATAAAGGCCACTGTATACTGTGCA

hide sequence

RefSeq Acc Id:

XM_039079038 ⟹ XP_038934966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,989,244 - 205,993,515 (+)	NCBI
mRatBN7.2	1	196,559,040 - 196,563,961 (+)	NCBI

RefSeq Acc Id:

XM_039079053 ⟹ XP_038934981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,990,658 - 205,993,515 (+)	NCBI
mRatBN7.2	1	196,561,102 - 196,563,961 (+)	NCBI

RefSeq Acc Id:

XM_039079062 ⟹ XP_038934990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,990,066 - 205,993,515 (+)	NCBI
mRatBN7.2	1	196,561,146 - 196,563,961 (+)	NCBI

RefSeq Acc Id:

XM_039079078 ⟹ XP_038935006

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,990,569 - 205,993,515 (+)	NCBI
mRatBN7.2	1	196,561,004 - 196,563,961 (+)	NCBI

RefSeq Acc Id:

XM_063264083 ⟹ XP_063120153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,987,959 - 205,993,515 (+)	NCBI

RefSeq Acc Id:

XM_063264085 ⟹ XP_063120155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,987,959 - 205,993,515 (+)	NCBI

RefSeq Acc Id:

XM_063264090 ⟹ XP_063120160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	205,987,959 - 205,993,515 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001121013	(Get FASTA)	NCBI Sequence Viewer
	NP_001426557	(Get FASTA)	NCBI Sequence Viewer
	NP_001426558	(Get FASTA)	NCBI Sequence Viewer
	NP_001426559	(Get FASTA)	NCBI Sequence Viewer
	NP_001426560	(Get FASTA)	NCBI Sequence Viewer
	NP_001426561	(Get FASTA)	NCBI Sequence Viewer
	NP_001426562	(Get FASTA)	NCBI Sequence Viewer
	NP_001426563	(Get FASTA)	NCBI Sequence Viewer
	NP_001426564	(Get FASTA)	NCBI Sequence Viewer
	XP_006230621	(Get FASTA)	NCBI Sequence Viewer
	XP_006230623	(Get FASTA)	NCBI Sequence Viewer
	XP_038934966	(Get FASTA)	NCBI Sequence Viewer
	XP_038934981	(Get FASTA)	NCBI Sequence Viewer
	XP_038934990	(Get FASTA)	NCBI Sequence Viewer
	XP_038935006	(Get FASTA)	NCBI Sequence Viewer
	XP_063120153	(Get FASTA)	NCBI Sequence Viewer
	XP_063120155	(Get FASTA)	NCBI Sequence Viewer
	XP_063120160	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58865	(Get FASTA)	NCBI Sequence Viewer
	B0BNK9	(Get FASTA)	NCBI Sequence Viewer
	EDM12067	(Get FASTA)	NCBI Sequence Viewer
	EDM12068	(Get FASTA)	NCBI Sequence Viewer
	EDM12069	(Get FASTA)	NCBI Sequence Viewer
	EDM12070	(Get FASTA)	NCBI Sequence Viewer
	EDM12071	(Get FASTA)	NCBI Sequence Viewer
	EDM12072	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025964
	ENSRNOP00000025964.4

RefSeq Acc Id:

NP_001121013 ⟸ NM_001127541

- UniProtKB:

B0BNK9 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MASPGPPGAGQGQEEEERAGVSAGHQAEVLQQAQELFVLCDKDAKGFITRQDLQGLQSDLPLTP
EQLEAVFESLDQAHTGFLTAREFCLGLGKFVGVESVPGRAPLRTPEETFESGTGGSLEEEDDVE
TFYTSLEKLGVARVLGEQWAVRTLWVGLQRERPELLGSLEEILMRASACLEAAARERDGLEQAL
RRRESEHEREVRGLYEELEQQLREQRQRRQSQNPPREEERGHLELELQTREQELERAALRQREL
EQQLQARAAEQLEVQAQHIQLQRAYEALRAQLDQAQEQLIRLEGEAQGRQEQTQRDVVAVSRNM
QKEKLSLLRQLELLRELNLRLRDERDACETKLLGSSHRKALAIAHKPGPIYCCCCCGWARPPRR
GSGHLPSAR

hide sequence

RefSeq Acc Id:

XP_006230623 ⟸ XM_006230561

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASPGPPGAGQGQEEEERAGVSAGHQAEVLQQAQELFVLCDKDAKGFITRQDLQGLQSDLPLTP
EQLEAVFESLDQAHTGFLTAREFCLGLGKFVGVESVPGRAPLRTPEETFESGTGGSLEEEDDVE
TFYTSLEKLGVARVLGEQWAVRTLWVGLQRERPELLGSLEEILMRASACLEAAARERDGLEQAL
RRRESEHEREVRGLYEELEQQLREQRQRRQSQNPPREEERGHLELELQTREQELERAALRQREL
EQQLQARAAEQLEVQAQHIQLQRAYEALRAQLDQAQEQLIRLEGEAQGRQEQTQRDVVAVSRNM
QKEKLSLLRQLELLRELNLRLRDERDACETKLLGSSHRKALAIAHKPGPIYCCCCCGWARPPRR
GSGHLPSAR

hide sequence

RefSeq Acc Id:

XP_006230621 ⟸ XM_006230559

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASPGPPGAGQGQEEEERAGVSAGHQAEVLQQAQELFVLCDKDAKGFITRQDLQGLQSDLPLTP
EQLEAVFESLDQAHTGFLTAREFCLGLGKFVGVESVPGRAPLRTPEETFESGTGGSLEEEDDVE
TFYTSLEKLGVARVLGEQWAVRTLWVGLQRERPELLGSLEEILMRASACLEAAARERDGLEQAL
RRRESEHEREVRGLYEELEQQLREQRQRRQSQNPPREEERGHLELELQTREQELERAALRQREL
EQQLQARAAEQLEVQAQHIQLQRAYEALRAQLDQAQEQLIRLEGEAQGRQEQTQRDVVAVSRNM
QKEKLSLLRQLELLRELNLRLRDERDACETKLLGSSHRKALAIAHKPGPIYCCCCCGWARPPRR
GSGHLPSAR

hide sequence

RefSeq Acc Id:	XP_038934966 ⟸ XM_039079038
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038935006 ⟸ XM_039079078
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038934981 ⟸ XM_039079053
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038934990 ⟸ XM_039079062
- Peptide Label:	isoform X2
- UniProtKB:	A6HXY9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000066436 ⟸ ENSRNOT00000071831

Ensembl Acc Id:

ENSRNOP00000025964 ⟸ ENSRNOT00000025964

RefSeq Acc Id:	XP_063120153 ⟸ XM_063264083
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120155 ⟸ XM_063264085
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120160 ⟸ XM_063264090
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000109932 ⟸ ENSRNOT00000137177

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BNK9-F1-model_v2	AlphaFold	B0BNK9	1-393	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690547

Promoter ID:

EPDNEW_R1071

Type:

single initiation site

Name:

Cracr2b_1

Description:

calcium release activated channel regulator 2B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	214,440,491 - 214,440,551	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560911	AgrOrtholog
BioCyc Gene	G2FUF-56948	BioCyc
Ensembl Genes	ENSRNOG00000019199	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000050158	Ensembl
Ensembl Transcript	ENSRNOT00000025964	ENTREZGENE
	ENSRNOT00000025964.6	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7936496	IMAGE-MGC_LOAD
InterPro	Ca-binding_regulatory	UniProtKB/Swiss-Prot
	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:309112	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:188459	IMAGE-MGC_LOAD
NCBI Gene	309112	ENTREZGENE
PANTHER	CALCIUM-BINDING PROTEIN 8	UniProtKB/Swiss-Prot
	CALCIUM-BINDING PROTEIN 8-RELATED	UniProtKB/Swiss-Prot
Pfam	EF-hand_7	UniProtKB/Swiss-Prot
PhenoGen	Cracr2b	PhenoGen
PROSITE	EF_HAND_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000019199	RatGTEx
	ENSRNOG00000050158	RatGTEx
SMART	EFh	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot
UniProt	A0A8L2QYD9_RAT	UniProtKB/TrEMBL
	A0ABK0LGJ6_RAT	UniProtKB/TrEMBL
	A6HXY9	ENTREZGENE, UniProtKB/TrEMBL
	B0BNK9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Cracr2b	calcium release activated channel regulator 2B	LOC100911692	EF-hand calcium-binding domain-containing protein 4A-like	Data merged from RGD:6491207	737654	PROVISIONAL
2014-07-09	Cracr2b	calcium release activated channel regulator 2B	Efcab4a	EF-hand calcium binding domain 4A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100911692	EF-hand calcium-binding domain-containing protein 4A-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-02-28	Efcab4a	EF-hand calcium binding domain 4A	RGD1560911_predicted	similar to BC026645 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560911_predicted	similar to BC026645 protein (predicted)	LOC309112	similar to BC026645 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC309112	similar to BC026645 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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