Pax9 (paired box 9) - Rat Genome Database

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Gene: Pax9 (paired box 9) Rattus norvegicus
Analyze
Symbol: Pax9
Name: paired box 9
RGD ID: 1560838
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including face morphogenesis; positive regulation of transcription by RNA polymerase II; and regulation of odontogenesis. Predicted to be located in nucleolus and nucleoplasm. Human ortholog(s) of this gene implicated in tooth agenesis. Orthologous to human PAX9 (paired box 9); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362741; paired box gene 9; paired box protein Pax-9; similar to transcription factor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8679,917,466 - 79,938,551 (+)NCBIGRCr8
mRatBN7.2674,186,749 - 74,203,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl674,182,568 - 74,203,506 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx674,600,161 - 74,616,896 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0674,899,473 - 74,916,209 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0674,326,950 - 74,343,674 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0677,607,705 - 77,624,453 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0687,133,943 - 87,150,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4677,107,768 - 77,124,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera672,993,727 - 73,010,469 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Temporal and spatial expression of Pax9 and Sonic hedgehog during development of normal mouse palates and cleft palates in TGF-beta3 null embryos. Sasaki Y, etal., Arch Oral Biol. 2007 Mar;52(3):260-7. Epub 2006 Nov 13.
Additional References at PubMed
PMID:9244299   PMID:11932925   PMID:12657635   PMID:14607846   PMID:15024065   PMID:17412341   PMID:20123092  


Genomics

Comparative Map Data
Pax9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8679,917,466 - 79,938,551 (+)NCBIGRCr8
mRatBN7.2674,186,749 - 74,203,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl674,182,568 - 74,203,506 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx674,600,161 - 74,616,896 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0674,899,473 - 74,916,209 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0674,326,950 - 74,343,674 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0677,607,705 - 77,624,453 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0687,133,943 - 87,150,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4677,107,768 - 77,124,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera672,993,727 - 73,010,469 (+)NCBICelera
Cytogenetic Map6q23NCBI
PAX9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381436,657,568 - 36,679,362 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1436,657,568 - 36,679,362 (+)EnsemblGRCh38hg38GRCh38
GRCh371437,126,773 - 37,148,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361436,196,533 - 36,216,763 (+)NCBINCBI36Build 36hg18NCBI36
Build 341436,200,655 - 36,215,621NCBI
Celera1416,990,297 - 17,010,560 (+)NCBICelera
Cytogenetic Map14q13.3NCBI
HuRef1417,241,127 - 17,261,385 (+)NCBIHuRef
CHM1_11437,125,895 - 37,146,158 (+)NCBICHM1_1
T2T-CHM13v2.01430,846,888 - 30,868,704 (+)NCBIT2T-CHM13v2.0
Pax9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391256,738,478 - 56,759,609 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1256,738,552 - 56,759,607 (+)EnsemblGRCm39 Ensembl
GRCm381256,691,693 - 56,712,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1256,691,767 - 56,712,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv371257,796,626 - 57,812,217 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361257,613,651 - 57,629,242 (+)NCBIMGSCv36mm8
Celera1257,861,482 - 57,877,076 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.53NCBI
Pax9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540924,424,343 - 24,444,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540924,401,599 - 24,443,687 (-)NCBIChiLan1.0ChiLan1.0
PAX9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21537,873,397 - 37,993,055 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11437,090,066 - 37,207,404 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01417,114,975 - 17,431,786 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11435,771,454 - 35,791,697 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1435,771,454 - 35,791,697 (+)Ensemblpanpan1.1panPan2
PAX9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1815,221,852 - 15,239,629 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl815,221,730 - 15,239,099 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha815,017,315 - 15,039,336 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0815,329,659 - 15,351,686 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl815,329,498 - 15,348,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1815,027,510 - 15,049,518 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0815,094,578 - 15,116,598 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0815,384,554 - 15,406,581 (+)NCBIUU_Cfam_GSD_1.0
Pax9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864047,148,014 - 47,167,288 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649410,658,077 - 10,672,251 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649410,657,902 - 10,673,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl763,324,711 - 63,346,310 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1763,324,709 - 63,346,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2768,235,727 - 68,254,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PAX9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12413,454,839 - 13,470,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2413,455,589 - 13,473,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660532,454,784 - 2,471,998 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624838133,476 - 149,636 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624838129,725 - 147,572 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pax9
132 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:777
Count of miRNA genes:295
Interacting mature miRNAs:391
Transcripts:ENSRNOT00000011802
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat

Markers in Region
BM390839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2674,184,965 - 74,185,123 (+)MAPPERmRatBN7.2
Rnor_6.0677,605,922 - 77,606,079NCBIRnor6.0
Rnor_5.0687,132,160 - 87,132,317UniSTSRnor5.0
RGSC_v3.4677,105,985 - 77,106,142UniSTSRGSC3.4
Celera672,991,944 - 72,992,101UniSTS
RH 3.4 Map6536.8UniSTS
Cytogenetic Map6q23UniSTS
PMC317134P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0677,607,700 - 77,608,651NCBIRnor6.0
Rnor_5.0687,133,938 - 87,134,889UniSTSRnor5.0
RGSC_v3.4677,107,763 - 77,108,714UniSTSRGSC3.4
Celera672,993,722 - 72,994,673UniSTS
Cytogenetic Map6q23UniSTS
D10Bir5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21675,814,643 - 75,814,737 (-)MAPPERmRatBN7.2
mRatBN7.2674,187,967 - 74,188,043 (+)MAPPERmRatBN7.2
Rnor_6.0677,608,918 - 77,608,993NCBIRnor6.0
Rnor_6.01681,475,176 - 81,475,269NCBIRnor6.0
Rnor_5.0687,135,156 - 87,135,231UniSTSRnor5.0
Rnor_5.01680,963,595 - 80,963,688UniSTSRnor5.0
RGSC_v3.4677,108,981 - 77,109,056UniSTSRGSC3.4
Celera672,994,940 - 72,995,015UniSTS
Cytogenetic Map6q23UniSTS
Cytogenetic Map16q12.5UniSTS
RH141318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2674,200,950 - 74,201,168 (+)MAPPERmRatBN7.2
Rnor_6.0677,621,896 - 77,622,113NCBIRnor6.0
Rnor_5.0687,148,134 - 87,148,351UniSTSRnor5.0
RGSC_v3.4677,121,963 - 77,122,180UniSTSRGSC3.4
Celera673,007,912 - 73,008,129UniSTS
RH 3.4 Map6535.3UniSTS
Cytogenetic Map6q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 3
Low 2 7 7 4 2 5 8
Below cutoff 1 28 10 2 4 2 7 9 9 13 13 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011802   ⟹   ENSRNOP00000011802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095003   ⟹   ENSRNOP00000080106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl674,186,749 - 74,203,506 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115808   ⟹   ENSRNOP00000087474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl674,182,568 - 74,203,506 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117692   ⟹   ENSRNOP00000084118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl674,187,660 - 74,203,506 (+)Ensembl
RefSeq Acc Id: NM_001039539   ⟹   NP_001034628
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8679,921,801 - 79,938,549 (+)NCBI
mRatBN7.2674,186,749 - 74,203,508 (+)NCBI
Rnor_6.0677,607,705 - 77,624,453 (+)NCBI
Rnor_5.0687,133,943 - 87,150,691 (+)NCBI
RGSC_v3.4677,107,768 - 77,124,520 (+)RGD
Celera672,993,727 - 73,010,469 (+)RGD
Sequence:
RefSeq Acc Id: XM_063262115   ⟹   XP_063118185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8679,917,466 - 79,938,551 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001034628   ⟸   NM_001039539
- UniProtKB: Q2L4T2 (UniProtKB/Swiss-Prot),   A6HBP0 (UniProtKB/TrEMBL),   A0A8I5ZYI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011802   ⟸   ENSRNOT00000011802
RefSeq Acc Id: ENSRNOP00000087474   ⟸   ENSRNOT00000115808
RefSeq Acc Id: ENSRNOP00000084118   ⟸   ENSRNOT00000117692
RefSeq Acc Id: ENSRNOP00000080106   ⟸   ENSRNOT00000095003
RefSeq Acc Id: XP_063118185   ⟸   XM_063262115
- Peptide Label: isoform X1
Protein Domains
Paired

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2L4T2-F1-model_v2 AlphaFold Q2L4T2 1-342 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560838 AgrOrtholog
BioCyc Gene G2FUF-37426 BioCyc
Ensembl Genes ENSRNOG00000008826 Ensembl
  ENSRNOG00000065348 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055013681 UniProtKB/Swiss-Prot
  ENSRNOG00060019465 UniProtKB/Swiss-Prot
  ENSRNOG00065005190 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000095003 ENTREZGENE
  ENSRNOT00000095003.1 UniProtKB/Swiss-Prot
  ENSRNOT00000115808.1 UniProtKB/TrEMBL
  ENSRNOT00000117692.1 UniProtKB/TrEMBL
  ENSRNOT00055023499 UniProtKB/Swiss-Prot
  ENSRNOT00060033728 UniProtKB/Swiss-Prot
  ENSRNOT00065007626 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_DNA-bd_dom UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Paired_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362741 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 362741 ENTREZGENE
PANTHER PTHR45636 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45636:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pax9 PhenoGen
PRINTS PAIREDBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PAIRED_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008826 RatGTEx
  ENSRNOG00000065348 RatGTEx
  ENSRNOG00055013681 RatGTEx
  ENSRNOG00060019465 RatGTEx
  ENSRNOG00065005190 RatGTEx
SMART PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZYI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GF64_RAT UniProtKB/TrEMBL
  A6HBP0 ENTREZGENE, UniProtKB/TrEMBL
  PAX9_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-30 Pax9  paired box 9  Pax9  paired box gene 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-06-01 Pax9  paired box gene 9  LOC362741  similar to transcription factor  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-02-09 LOC362741  similar to transcription factor      Symbol and Name status set to provisional 70820 PROVISIONAL