Pax9 (paired box 9) - Rat Genome Database

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Gene: Pax9 (paired box 9) Rattus norvegicus
Analyze
Symbol: Pax9
Name: paired box 9
RGD ID: 1560838
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including face morphogenesis; positive regulation of transcription by RNA polymerase II; and regulation of odontogenesis. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in tooth agenesis. Orthologous to human PAX9 (paired box 9); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362741; paired box gene 9; paired box protein Pax-9; similar to transcription factor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8679,917,466 - 79,938,551 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl679,921,801 - 79,938,549 (+)EnsemblGRCr8
mRatBN7.2674,186,749 - 74,203,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl674,182,568 - 74,203,506 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx674,600,161 - 74,616,896 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0674,899,473 - 74,916,209 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0674,326,950 - 74,343,674 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0677,607,705 - 77,624,453 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)Ensemblrn6Rnor6.0
Rnor_5.0687,133,943 - 87,150,691 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4677,107,768 - 77,124,520 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera672,993,727 - 73,010,469 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Temporal and spatial expression of Pax9 and Sonic hedgehog during development of normal mouse palates and cleft palates in TGF-beta3 null embryos. Sasaki Y, etal., Arch Oral Biol. 2007 Mar;52(3):260-7. Epub 2006 Nov 13.
Additional References at PubMed
PMID:9244299   PMID:11932925   PMID:12657635   PMID:14607846   PMID:15024065   PMID:17412341   PMID:20123092  


Genomics

Comparative Map Data
Pax9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8679,917,466 - 79,938,551 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl679,921,801 - 79,938,549 (+)EnsemblGRCr8
mRatBN7.2674,186,749 - 74,203,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl674,182,568 - 74,203,506 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx674,600,161 - 74,616,896 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0674,899,473 - 74,916,209 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0674,326,950 - 74,343,674 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0677,607,705 - 77,624,453 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)Ensemblrn6Rnor6.0
Rnor_5.0687,133,943 - 87,150,691 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4677,107,768 - 77,124,520 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera672,993,727 - 73,010,469 (+)NCBICelera
Cytogenetic Map6q23NCBI
PAX9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381436,657,568 - 36,679,362 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1436,657,568 - 36,679,362 (+)Ensemblhg38GRCh38
GRCh371437,126,773 - 37,148,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361436,196,533 - 36,216,763 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341436,200,655 - 36,215,621NCBI
Celera1416,990,297 - 17,010,560 (+)NCBICelera
Cytogenetic Map14q13.3NCBI
HuRef1417,241,127 - 17,261,385 (+)NCBIHuRef
CHM1_11437,125,895 - 37,146,158 (+)NCBICHM1_1
T2T-CHM13v2.01430,846,888 - 30,868,704 (+)NCBIT2T-CHM13v2.0
Pax9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391256,738,478 - 56,759,609 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1256,738,552 - 56,759,607 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381256,691,693 - 56,712,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1256,691,767 - 56,712,822 (+)Ensemblmm10GRCm38
MGSCv371257,796,626 - 57,812,217 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361257,613,651 - 57,629,242 (+)NCBIMGSCv36mm8
Celera1257,861,482 - 57,877,076 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.53NCBI
Pax9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540924,424,343 - 24,444,040 (-)Ensembl
ChiLan1.0NW_00495540924,401,599 - 24,443,687 (-)NCBIChiLan1.0ChiLan1.0
PAX9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21537,873,397 - 37,993,055 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11437,090,066 - 37,207,404 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01417,114,975 - 17,431,786 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11435,771,454 - 35,791,697 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1435,771,454 - 35,791,697 (+)EnsemblpanPan2panpan1.1
PAX9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1815,221,852 - 15,239,629 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl815,221,730 - 15,239,099 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha815,017,315 - 15,039,336 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0815,329,659 - 15,351,686 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl815,329,498 - 15,348,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1815,027,510 - 15,049,518 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0815,094,578 - 15,116,598 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0815,384,554 - 15,406,581 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pax9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864047,148,014 - 47,167,288 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649410,658,077 - 10,672,251 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649410,657,902 - 10,673,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl763,324,711 - 63,346,310 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1763,324,709 - 63,346,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2768,235,727 - 68,254,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PAX9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12413,454,839 - 13,470,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2413,455,589 - 13,473,505 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660532,454,784 - 2,471,998 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624838133,476 - 149,636 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624838129,725 - 147,572 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pax9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1770,061,024 - 70,077,633 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pax9
169 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:777
Count of miRNA genes:295
Interacting mature miRNAs:391
Transcripts:ENSRNOT00000011802
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
BM390839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2674,184,965 - 74,185,123 (+)MAPPERmRatBN7.2
Rnor_6.0677,605,922 - 77,606,079NCBIRnor6.0
Rnor_5.0687,132,160 - 87,132,317UniSTSRnor5.0
RGSC_v3.4677,105,985 - 77,106,142UniSTSRGSC3.4
Celera672,991,944 - 72,992,101UniSTS
RH 3.4 Map6536.8UniSTS
Cytogenetic Map6q23UniSTS
PMC317134P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8679,921,795 - 79,922,743 (+)Marker Load Pipeline
Rnor_6.0677,607,700 - 77,608,651NCBIRnor6.0
Rnor_5.0687,133,938 - 87,134,889UniSTSRnor5.0
RGSC_v3.4677,107,763 - 77,108,714UniSTSRGSC3.4
Celera672,993,722 - 72,994,673UniSTS
Cytogenetic Map6q23UniSTS
D10Bir5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21675,814,643 - 75,814,737 (-)MAPPERmRatBN7.2
mRatBN7.2674,187,967 - 74,188,043 (+)MAPPERmRatBN7.2
Rnor_6.0677,608,918 - 77,608,993NCBIRnor6.0
Rnor_6.01681,475,176 - 81,475,269NCBIRnor6.0
Rnor_5.0687,135,156 - 87,135,231UniSTSRnor5.0
Rnor_5.01680,963,595 - 80,963,688UniSTSRnor5.0
RGSC_v3.4677,108,981 - 77,109,056UniSTSRGSC3.4
Celera672,994,940 - 72,995,015UniSTS
Cytogenetic Map6q23UniSTS
Cytogenetic Map16q12.5UniSTS
RH141318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2674,200,950 - 74,201,168 (+)MAPPERmRatBN7.2
Rnor_6.0677,621,896 - 77,622,113NCBIRnor6.0
Rnor_5.0687,148,134 - 87,148,351UniSTSRnor5.0
RGSC_v3.4677,121,963 - 77,122,180UniSTSRGSC3.4
Celera673,007,912 - 73,008,129UniSTS
RH 3.4 Map6535.3UniSTS
Cytogenetic Map6q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
6 10 52 54 40 35 8 33 8 5 188 117 11 31 50 66 27 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000011802   ⟹   ENSRNOP00000011802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095003   ⟹   ENSRNOP00000080106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl679,921,801 - 79,938,549 (+)Ensembl
mRatBN7.2 Ensembl674,186,749 - 74,203,506 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115808   ⟹   ENSRNOP00000087474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl679,921,801 - 79,937,203 (+)Ensembl
mRatBN7.2 Ensembl674,182,568 - 74,203,506 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117692   ⟹   ENSRNOP00000084118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl679,922,702 - 79,938,549 (+)Ensembl
mRatBN7.2 Ensembl674,187,660 - 74,203,506 (+)Ensembl
RefSeq Acc Id: NM_001039539   ⟹   NP_001034628
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8679,921,801 - 79,938,549 (+)NCBI
mRatBN7.2674,186,749 - 74,203,508 (+)NCBI
Rnor_6.0677,607,705 - 77,624,453 (+)NCBI
Rnor_5.0687,133,943 - 87,150,691 (+)NCBI
RGSC_v3.4677,107,768 - 77,124,520 (+)RGD
Celera672,993,727 - 73,010,469 (+)RGD
Sequence:
RefSeq Acc Id: XM_063262115   ⟹   XP_063118185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8679,917,466 - 79,938,551 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001034628 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118185 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE79272 (Get FASTA)   NCBI Sequence Viewer  
  EDM03445 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000080106
  ENSRNOP00000080106.1
GenBank Protein Q2L4T2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001034628   ⟸   NM_001039539
- UniProtKB: Q2L4T2 (UniProtKB/Swiss-Prot),   A6HBP0 (UniProtKB/TrEMBL),   A0A8I5ZYI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011802   ⟸   ENSRNOT00000011802
Ensembl Acc Id: ENSRNOP00000087474   ⟸   ENSRNOT00000115808
Ensembl Acc Id: ENSRNOP00000084118   ⟸   ENSRNOT00000117692
Ensembl Acc Id: ENSRNOP00000080106   ⟸   ENSRNOT00000095003
RefSeq Acc Id: XP_063118185   ⟸   XM_063262115
- Peptide Label: isoform X1
- UniProtKB: Q2L4T2 (UniProtKB/Swiss-Prot),   A6HBP0 (UniProtKB/TrEMBL),   A0A8I5ZYI2 (UniProtKB/TrEMBL)
Protein Domains
Paired

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2L4T2-F1-model_v2 AlphaFold Q2L4T2 1-342 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560838 AgrOrtholog
BioCyc Gene G2FUF-37426 BioCyc
Ensembl Genes ENSRNOG00000008826 Ensembl
  ENSRNOG00000065348 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000095003 ENTREZGENE
  ENSRNOT00000095003.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot
  PAIRED_DNA_bd_dom UniProtKB/Swiss-Prot
  Paired_dom UniProtKB/Swiss-Prot
  PAX_fam UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:362741 UniProtKB/Swiss-Prot
NCBI Gene 362741 ENTREZGENE
PANTHER PTHR45636 UniProtKB/Swiss-Prot
  PTHR45636:SF13 UniProtKB/Swiss-Prot
Pfam PAX UniProtKB/Swiss-Prot
PhenoGen Pax9 PhenoGen
PRINTS PAIREDBOX UniProtKB/Swiss-Prot
PROSITE PAIRED_1 UniProtKB/Swiss-Prot
  PAIRED_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008826 RatGTEx
  ENSRNOG00000065348 RatGTEx
SMART PAX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
UniProt A0A8I5ZYI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GF64_RAT UniProtKB/TrEMBL
  A6HBP0 ENTREZGENE, UniProtKB/TrEMBL
  PAX9_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-30 Pax9  paired box 9  Pax9  paired box gene 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-06-01 Pax9  paired box gene 9  LOC362741  similar to transcription factor  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-02-09 LOC362741  similar to transcription factor      Symbol and Name status set to provisional 70820 PROVISIONAL