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Gene: Stard8 (StAR-related lipid transfer domain containing 8) Rattus norvegicus

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Symbol:

Stard8

Name:

StAR-related lipid transfer domain containing 8

RGD ID:

1560770

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in actin cytoskeleton organization and regulation of Rho protein signal transduction. Orthologous to human STARD8 (StAR related lipid transfer domain containing 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC312113; RGD1560770; similar to START domain containing 8; StAR-related lipid transfer (START) domain containing 8; stAR-related lipid transfer protein 8; START domain containing 8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	68,119,276 - 68,236,247 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	68,119,644 - 68,236,246 (+)	Ensembl				GRCr8
mRatBN7.2	X	64,079,079 - 64,196,052 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	64,124,574 - 64,196,052 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	65,665,621 - 65,679,569 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	69,165,962 - 69,179,914 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	66,726,912 - 66,740,854 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	68,713,157 - 68,785,046 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	68,713,123 - 68,785,052 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	69,587,772 - 69,659,522 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	87,088,565 - 87,102,511 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	64,551,816 - 64,565,762 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

Colorectal Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5-triiodo-L-thyronine (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

carbon nanotube (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dioxygen (ISO)

epoxiconazole (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

kojic acid (ISO)

methapyrilene (ISO)

nitrofen (EXP)

ozone (ISO)

paracetamol (ISO)

PCB138 (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA)

regulation of Rho protein signal transduction (IBA)

signal transduction (IEA)

Molecular Function

GTPase activator activity (IBA,IEA)

lipid binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15632090

Genomics

Comparative Map Data

Stard8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	68,119,276 - 68,236,247 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	68,119,644 - 68,236,246 (+)	Ensembl				GRCr8
mRatBN7.2	X	64,079,079 - 64,196,052 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	64,124,574 - 64,196,052 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	65,665,621 - 65,679,569 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	69,165,962 - 69,179,914 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	66,726,912 - 66,740,854 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	68,713,157 - 68,785,046 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	68,713,123 - 68,785,052 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	69,587,772 - 69,659,522 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	87,088,565 - 87,102,511 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	64,551,816 - 64,565,762 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

STARD8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	68,647,666 - 68,725,836 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	68,647,666 - 68,725,842 (+)	Ensembl			hg38	GRCh38
GRCh37	X	67,867,508 - 67,945,678 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	67,784,236 - 67,862,403 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	67,650,531 - 67,728,698	NCBI
Celera	X	68,220,334 - 68,298,611 (+)	NCBI		Celera
Cytogenetic Map	X	q13.1	NCBI
HuRef	X	61,695,452 - 61,772,608 (+)	NCBI		HuRef
CHM1_1	X	67,760,683 - 67,838,871 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	67,081,162 - 67,159,288 (+)	NCBI		T2T-CHM13v2.0

Stard8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	98,046,539 - 98,118,334 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	98,046,854 - 98,118,334 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	99,002,933 - 99,074,728 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	99,003,248 - 99,074,728 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	96,237,920 - 96,270,067 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	95,245,384 - 95,277,447 (+)	NCBI		MGSCv36	mm8
Celera	X	85,983,748 - 86,015,610 (+)	NCBI		Celera
Cytogenetic Map	X	C3	NCBI
cM Map	X	43.19	NCBI

Stard8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	8,245,754 - 8,278,319 (+)	Ensembl
ChiLan1.0	NW_004955475	8,203,624 - 8,278,319 (+)	NCBI	ChiLan1.0	ChiLan1.0

STARD8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	68,299,028 - 68,377,083 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	68,302,603 - 68,380,880 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	57,890,362 - 57,968,391 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	67,955,393 - 68,031,958 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	67,954,883 - 68,031,958 (+)	Ensembl			panPan2	panpan1.1

STARD8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	53,128,122 - 53,211,115 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	53,128,095 - 53,210,852 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	43,953,760 - 44,036,713 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	54,087,072 - 54,170,149 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	54,086,983 - 54,169,887 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	52,061,722 - 52,144,669 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	53,390,428 - 53,473,431 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	53,314,126 - 53,397,128 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stard8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	48,876,064 - 48,953,571 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936777	323,367 - 358,243 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936777	316,332 - 358,241 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STARD8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	54,773,171 - 54,856,711 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	54,773,189 - 54,856,716 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	61,989,481 - 62,001,599 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STARD8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	58,487,688 - 58,569,710 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	58,556,806 - 58,566,551 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	342,579 - 420,535 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stard8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624891	1,508,980 - 1,547,811 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624891	1,509,113 - 1,540,416 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stard8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	57,034,084 - 57,072,301 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stard8
255 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	186
Count of miRNA genes:	125
Interacting mature miRNAs:	152
Transcripts:	ENSRNOT00000043872
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	44930883	89930883	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	82	59	6	346	182	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043872 ⟹ ENSRNOP00000042131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	68,164,817 - 68,236,246 (+)	Ensembl
mRatBN7.2 Ensembl	X	64,124,574 - 64,196,052 (+)	Ensembl
Rnor_6.0 Ensembl	X	68,771,100 - 68,785,046 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075995 ⟹ ENSRNOP00000067895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	68,782,872 - 68,783,725 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076690 ⟹ ENSRNOP00000067952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	68,713,123 - 68,776,156 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077039 ⟹ ENSRNOP00000068015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	68,752,597 - 68,783,944 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081662 ⟹ ENSRNOP00000070263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	68,774,699 - 68,785,052 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123604 ⟹ ENSRNOP00000104319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	68,119,644 - 68,236,245 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143878 ⟹ ENSRNOP00000109884

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	68,205,288 - 68,236,246 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153437 ⟹ ENSRNOP00000111209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	68,204,202 - 68,236,246 (+)	Ensembl

RefSeq Acc Id:

NM_001107849 ⟹ NP_001101319

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	68,204,224 - 68,235,677 (+)	NCBI
mRatBN7.2	X	64,164,037 - 64,195,484 (+)	NCBI
Rnor_6.0	X	68,771,100 - 68,785,046 (+)	NCBI
Rnor_5.0	X	69,587,772 - 69,659,522 (+)	NCBI
RGSC_v3.4	X	87,088,565 - 87,102,511 (+)	RGD
Celera	X	64,551,816 - 64,565,762 (+)	RGD

Sequence:

show sequence

AAGCTGAGGCCAAAAAAGCATGTGAATGGCTCCGGGCCACAGGATTCCCTCAGTATGCTCAGCT
TTTTGAAGAAGGTGTATTCCCCCTGGATATTGGCTCTGTGAAGAAGGACTACAGTTTTCTGGAC
CAGGACTCTCTGGGGGCCCTGTGCAGGAGGCTGATGACCCTGAACAATTGTGCTTCGATGAAGC
TCGAGGTTCATTTTCGATGCAAGCAGGATGACGACTCAGAAGAGGAGGAGCAATGCACCATCAG
CAGCCACTGGGCCTTTGAGCAGGAAAGCAAGTGTGGGTCTCTCACGGGCTCTTCTGCCCTGCTG
GCCCCACCAAGCCCTAGCCTCCCGGGGACCTCAAGCTGTGAAAGTGTCCTCACCGAGCTTAGCG
CTGCCTCTCTGCCAGCCATCTCCGTGAGCCTTTCGCCAGAGTCAGCAGACCTGCCCTTGTTAGG
TCATGTCCCCAGCCCAAGTAACCAGCCCTTCCTTAGTCCCACCCAGGGCCAGGAGGGTTCCCAA
GACAAAGTGAAGAAGCATTATTCCAGAAGCTTCCTCAAGCACCTCGAATCTCTGAGGAGGAAGG
AAAAGGGTGACAGCCGGCAAACAGAACCTGAGCAACGCTTAGCCACCTCAGAAAAGGCCACTAA
AGCCTCATCTTTCCGCACTTGCCGTGGCCTCCTCTCAGTTGGATTTCACAGGGCCAAGAACAGG
GTCACCACTTCACCCAGGGTCAGAGATGGTGAGACTCAGAAAACCTGGGAGGCTTGGCCTGTAG
CCACATTCCGGCATCCTCAGCCTAATCGCAGGCATGACTGCCTGGTGCATGTGCCTAGGGACCA
TAAGCCAGGCACATTCCCTCGTTCTCTGTCCATTGAAAGCCTTTGTCCAGATGATAGTCGTCAC
CTGGCAGATTGGCAGCCAAATAGGTGCTGGGGCTATGAAGGGCGCCGGGGCTCCTGTGGTTCTA
CCGGCAGCCATGCCAGCACTTACGACAACTTGCCTGAGCTGTACCCAGCTGAGCCTATACAGGC
TGAGGCTGAAGATGAAGATGAGGAGGGTGAAGGCAGCTATGCCCATCTAGATGACATCCTAGAG
CATGTGTGGGGGCTACAGCAACGGGTAGAGCTGTGGTCTCAGGCCATGTACCCAGACTTGAGGC
CTGGAGATAAGGAGGAGGAAGAGGAGGAGGAAGAGGAAGCTACTTCATCAGTGGAAATAGCCAC
AGCTGAGGTGGAAGGCCAGGATGAAGCTCTAGCCCAGGCAGAGTCCCAAGTCCACAGAGGTTTC
CCAACTGAAGTCAAGGAGGAAGTCCCACTGATAGTCCTGGATCAGGCCCCGACTGTGGTTGAAC
CATTGGTACAGGCTGAGGCTCCAGCCCAGGCCCAGCATCCTGAGCAAGACGCAAATTCAGCCGC
AGAGCCTATTTCTGCCTCCAGCCTGTCCGTGGAGGAAGGGCATTCCATTTCTGACACAGCGGTA
TCCTCCAGTGAACTTGACAGTAGTGGCAACTCCGTGAATGAGGCAGATGTTGCAGACGCCCTGG
CGGGACCTAACGCATCAGTACCCCGTGAACGGCGTGACTCGGGTGTCGGGGCCTCACTTACCAG
ACCATGCAGGAAACTTCGTTGGCACAGCTTCCAGAATTCCCACCGACCTAGTCTCAACTCAGAG
TCACTGGAGATCAACAGGCAGTTTGCAGGCCAGATCAACTTGCTTCACAAGGGCTCTCTGCTGC
GGCTCACTGGCTTCATGGAAAAGTACACTGTGCCCCACAAACAAGCCTGGGTATGGTCAATGCC
CAAGTTTATGAAAAGAAACAAAACCCCAGACTACCGGGGACACCATGTATTTGGAGTGCCACCC
CTCATTCATGTCCAGCGTACAGGCCAACCCTTGCCCCAGAGCATTCAGCAAGCTATGCGCTACC
TACGAAGCCAGTGCCTAGACCAGGTGGGCATCTTTCGCAAGTCTGGGGTCAAGTCCAGGATTCA
GAGCCTACGCCAAATGAATGAGACATCCCCTGACAACGTCTGCTATGAGGGCCAGTCGGCCTAC
GATGTGGCTGATTTACTGAAGCAGTATTTCCGAGACCTGCCTGAGCCCATTTTTACCAGCAAGC
TCACCACCACTTTCCTACAAATCTACCAGCTCCTCCCCAAAGAACAGTGGTTGGCAGCGGCACA
AGCTGCCACCTTGCTGCTCCCTGACGAGAACCGAGAAGTGCTACAGACCCTGCTCTATTTCCTA
AGTGACATTGCCTCTGCTGAGGAAAACCAGATGACAGCTGGCAACCTGGCAGTGTGCCTGGCAC
CCTCTATCTTCCACCTCAATGTCTCCAAGAAGGACAGCCCCTCACCCAGGATCAAGAGCAAACG
AAGCCTGGTTGGCCGGCCAGGCCCCAGGGACTTGAGTGAGAACATGGCTGCCACACAAGGTCTA
TCACACATGATCAGTGACTGCAAGAAACTTTTCCAGGTACCCCAGGATATGGTGGTGCAACTAT
GTGGTTCATACAGTGCAGCTGAGCTCACCCCTCCTGGGCCAGCCCTGGCTGAGCTAAGGCAAGC
ACAGGCTGCTGGGGTGAGTCTGAGCCTTTACATGGAGGAGAGTGTGCAGGAGTTGCTCCGGGAT
GCTGCAGAACGCTTCAAGGGATGGACCAATGTGCCGGGGCCCCAGCACACAGAGCTGGCTTGCA
GGAAGGCACCAGATGGGCACCCTCTTCGGATGTGGAAGGCATCCACAGAAGTGGCTGCCCCTCC
AGCTGTGGTGCTGCATCGTGTCCTTCGGGAGCGGGCCCTGTGGGATGAGGACCTACTGCGGGCC
CAGGTGCTGGAAGCCCTGATGCCAGGTGTGGAACTGTACCACTATGTCACTGACAGCATGGCAC
CCCATCCTTGCCGTGACTTTGTGGTGCTCAGGATGTGGCGCTCAGACCTGCCTCGTGGTGGGTG
CCTCCTTGTCTCTCAGTCCCTGGATCCTGAGCAACCCGTGCCAGAGTCTGGAGTACGCGCCCTC
ATGCTCACTTCCCAGTACCTCATGGAACCCTGTGGCCTGGGCCGCTCTCGCCTCACTCATATTT
GCCGCGCTGACCTCAGGGGCCGTTCTCCTGACTGGTACAACAAAGTCTTTGGGCACTTGTGTGC
CATGGAAGTGGCAAAGATCCGAGACTCCTTCCCAACACTTCAGGCAGCTGGCCCTGAAACAAAG
CTATGAGTCTTGGGCTGACACTGCCCAGGCACCTGCCACCAAAGAAATGAGTGGGAATAAGAAC
TGAGACGCCTTTAGGGACACAGCCAGGCCTAAGTGGCCCAGCTGCCTATCCTCTTGCATTTTAA
TGCTACTCTGCACATACACCAGAGAAGAGAGCGTAGGTGTCCTGCCTCCACCCACCCTCATCCC
CACACTACCTTCTGACCTCACAAGCGAAGAGAATCTTGTTAGTGGCAAGAAGATCGTTGCTGTC
CACCTGACCAAGAAGATGCTACTGCATCTGGAGGCCCAGCAGGGGAAGAAGGTGGAGAGCACTG
TGCAGCCTGGGCTCTCTTCTGTCATACCAAGAAGCCAGGCCATGAGTTTTGGTGCTAGGGTTCT
TTTGAGTTTGAATATGGGGTCTGATCCTGCCTTTGGGGTCAACATGGACCCTGAATACAGGTCT
GGAACACCAGCTGGGGTAAGCACAGGGAAACACCAACCACCACAATCCATTTTATTTATGTAAA
CATGATGCTTTATGAAGAAGCCTCCGAGTGGCCCTATGAGCCCTTAGTAGGTAACATGACGAAC
TGGGATACCTTGAGATATGAGGCAAGCCCCAAGACACCAATGAACCATTCTCCCCTACTTTGAC
CCACACTTCCTCTATTACTCCCCAGAGTTGTTGGCAACCTTTGGCCACTCATGGCCATAGAGAC
AAATGAGTTAGCTTATTCCCATGACACAGGCCAGGCCAAAGCTGACAGTGGCAGCAAGATATAC
AAATGTATCCTCATGCATTTTGCCCATGGTGGTGATCTATAAGAACAGTTCTTTCGATCTGAGA
GTAGCTGCTTTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACAGTGCTGCAGAACCATC
TGTAATGAGATCTGATGCCCCCTTCTGGTGTGTATGTAGACAGCTACACAGTGTCTTCATATAC
ATCATAAATAAATAATTCTTTTTTAAAAAAGTAAAACCAAGTGTCCTAAAACAAAGCAAACAAA
CAAGCAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAAACCAAAAGAACAGTCCATTCCTAGAGTAGACACCCTGGAAAAACACAAGGAAGGGCCTCC
TTTAGCCATTCTGGGCTTGATACCAGCCTGATCTATTCCATCTACTGGTTATGTTTGTTCAGAT
AGAAACCAAACAGCCATTCAGAGGCCAAGTGGTGCTTTCTTTGTCTTTGGCTGATTTAACTGGA
TTTCGATGGGTTGCAGCTATCATTGTAATGTTAATCCTGTTTTCTCCATACCTATAAATACTGT
ACAGCCAAAATATATATGTGTATATGTATATATATACATATGTATATACCTATACATATACACA
CATATCTGCATGCACACACAGCTACTCCCTCTTGAGTACATTATACTCTCTGGATGGGAGCAGG
GTCTGGAGGGCCTGGACTAACACACTTCTGTTCTAATGAGAAAGGAGAGGTGAAGGGCAGGCCA
CAGAATTTCCCTCTGCAGAATAAAGCATGACTGGAGATGCA

hide sequence

RefSeq Acc Id:

XM_006257074 ⟹ XP_006257136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	68,164,740 - 68,236,247 (+)	NCBI
mRatBN7.2	X	64,124,555 - 64,195,530 (+)	NCBI
Rnor_6.0	X	68,713,157 - 68,784,234 (+)	NCBI
Rnor_5.0	X	69,587,772 - 69,659,522 (+)	NCBI

Sequence:

show sequence

TCTCCAGGAGGGGCCTGCCCTTGAGCTGAGCTGCTGTCCGCCTCTCCCCTCCCAGTGCCGCTGA
TGGAGCACAGGGATAGGACTGGCTCTCACAGAGCCCTGGGTCTCTTCTTGCTTTTCCCCTAGAT
AGAGGGGGTCACGCCCAGCAGAGCCCTGCGGAGTCCCTCCAGCGTCTCACTATGCCTCTGCTGG
ATGTGTTCTGGGCTTGCTTCAGGAAAGTGAAGTGCTTCCCGTCGCTGCCAGGGAGGAGGAATGT
CGAAGCTGAGGCCAAAAAAGCATGTGAATGGCTCCGGGCCACAGGATTCCCTCAGTATGCTCAG
CTTTTTGAAGAAGGTGTATTCCCCCTGGATATTGGCTCTGTGAAGAAGGACTACAGTTTTCTGG
ACCAGGACTCTCTGGGGGCCCTGTGCAGGAGGCTGATGACCCTGAACAATTGTGCTTCGATGAA
GCTCGAGGTTCATTTTCGATGCAAGCAGGATGACGACTCAGAAGAGGAGGAGCAATGCACCATC
AGCAGCCACTGGGCCTTTGAGCAGGAAAGCAAGTGTGGGTCTCTCACGGGCTCTTCTGCCCTGC
TGGCCCCACCAAGCCCTAGCCTCCCGGGGACCTCAAGCTGTGAAAGTGTCCTCACCGAGCTTAG
CGCTGCCTCTCTGCCAGCCATCTCCGTGAGCCTTTCGCCAGAGTCAGCAGACCTGCCCTTGTTA
GGTCATGTCCCCAGCCCAAGTAACCAGCCCTTCCTTAGTCCCACCCAGGGCCAGGAGGGTTCCC
AAGACAAAGTGAAGAAGCATTATTCCAGAAGCTTCCTCAAGCACCTCGAATCTCTGAGGAGGAA
GGAAAAGGGTGACAGCCGGCAAACAGAACCTGAGCAACGCTTAGCCACCTCAGAAAAGGCCACT
AAAGCCTCATCTTTCCGCACTTGCCGTGGCCTCCTCTCAGTTGGATTTCACAGGGCCAAGAACA
GGGTCACCACTTCACCCAGGGTCAGAGATGGTGAGACTCAGAAAACCTGGGAGGCTTGGCCTGT
AGCCACATTCCGGCATCCTCAGCCTAATCGCAGGCATGACTGCCTGGTGCATGTGCCTAGGGAC
CATAAGCCAGGCACATTCCCTCGTTCTCTGTCCATTGAAAGCCTTTGTCCAGATGATAGTCGTC
ACCTGGCAGATTGGCAGCCAAATAGGTGCTGGGGCTATGAAGGGCGCCGGGGCTCCTGTGGTTC
TACCGGCAGCCATGCCAGCACTTACGACAACTTGCCTGAGCTGTACCCAGCTGAGCCTATACAG
GCTGAGGCTGAAGATGAAGATGAGGAGGGTGAAGGCAGCTATGCCCATCTAGATGACATCCTAG
AGCATGTGTGGGGGCTACAGCAACGGGTAGAGCTGTGGTCTCAGGCCATGTACCCAGACTTGAG
GCCTGGAGATAAGGAGGAGGAAGAGGAGGAGGAAGAGGAAGCTACTTCATCAGTGGAAATAGCC
ACAGCTGAGGTGGAAGGCCAGGATGAAGCTCTAGCCCAGGCAGAGTCCCAAGTCCACAGAGGTT
TCCCAACTGAAGTCAAGGAGGAAGTCCCACTGATAGTCCTGGATCAGGCCCCGACTGTGGTTGA
ACCATTGGTACAGGCTGAGGCTCCAGCCCAGGCCCAGCATCCTGAGCAAGACGCAAATTCAGCC
GCAGAGCCTATTTCTGCCTCCAGCCTGTCCGTGGAGGAAGGGCATTCCATTTCTGACACAGCGG
TATCCTCCAGTGAACTTGACAGTAGTGGCAACTCCGTGAATGAGGCAGATGTTGCAGACGCCCT
GGCGGGACCTAACGCATCAGTACCCCGTGAACGGCGTGACTCGGGTGTCGGGGCCTCACTTACC
AGACCATGCAGGAAACTTCGTTGGCACAGCTTCCAGAATTCCCACCGACCTAGTCTCAACTCAG
AGTCACTGGAGATCAACAGGCAGTTTGCAGGCCAGATCAACTTGCTTCACAAGGGCTCTCTGCT
GCGGCTCACTGGCTTCATGGAAAAGTACACTGTGCCCCACAAACAAGCCTGGGTATGGTCAATG
CCCAAGTTTATGAAAAGAAACAAAACCCCAGACTACCGGGGACACCATGTATTTGGAGTGCCAC
CCCTCATTCATGTCCAGCGTACAGGCCAACCCTTGCCCCAGAGCATTCAGCAAGCTATGCGCTA
CCTACGAAGCCAGTGCCTAGACCAGGTGGGCATCTTTCGCAAGTCTGGGGTCAAGTCCAGGATT
CAGAGCCTACGCCAAATGAATGAGACATCCCCTGACAACGTCTGCTATGAGGGCCAGTCGGCCT
ACGATGTGGCTGATTTACTGAAGCAGTATTTCCGAGACCTGCCTGAGCCCATTTTTACCAGCAA
GCTCACCACCACTTTCCTACAAATCTACCAGCTCCTCCCCAAAGAACAGTGGTTGGCAGCGGCA
CAAGCTGCCACCTTGCTGCTCCCTGACGAGAACCGAGAAGTGCTACAGACCCTGCTCTATTTCC
TAAGTGACATTGCCTCTGCTGAGGAAAACCAGATGACAGCTGGCAACCTGGCAGTGTGCCTGGC
ACCCTCTATCTTCCACCTCAATGTCTCCAAGAAGGACAGCCCCTCACCCAGGATCAAGAGCAAA
CGAAGCCTGGTTGGCCGGCCAGGCCCCAGGGACTTGAGTGAGAACATGGCTGCCACACAAGGTC
TATCACACATGATCAGTGACTGCAAGAAACTTTTCCAGGTACCCCAGGATATGGTGGTGCAACT
ATGTGGTTCATACAGTGCAGCTGAGCTCACCCCTCCTGGGCCAGCCCTGGCTGAGCTAAGGCAA
GCACAGGCTGCTGGGGTGAGTCTGAGCCTTTACATGGAGGAGAGTGTGCAGGAGTTGCTCCGGG
ATGCTGCAGAACGCTTCAAGGGATGGACCAATGTGCCGGGGCCCCAGCACACAGAGCTGGCTTG
CAGGAAGGCACCAGATGGGCACCCTCTTCGGATGTGGAAGGCATCCACAGAAGTGGCTGCCCCT
CCAGCTGTGGTGCTGCATCGTGTCCTTCGGGAGCGGGCCCTGTGGGATGAGGACCTACTGCGGG
CCCAGGTGCTGGAAGCCCTGATGCCAGGTGTGGAACTGTACCACTATGTCACTGACAGCATGGC
ACCCCATCCTTGCCGTGACTTTGTGGTGCTCAGGATGTGGCGCTCAGACCTGCCTCGTGGTGGG
TGCCTCCTTGTCTCTCAGTCCCTGGATCCTGAGCAACCCGTGCCAGAGTCTGGAGTACGCGCCC
TCATGCTCACTTCCCAGTACCTCATGGAACCCTGTGGCCTGGGCCGCTCTCGCCTCACTCATAT
TTGCCGCGCTGACCTCAGGGGCCGTTCTCCTGACTGGTACAACAAAGTCTTTGGGCACTTGTGT
GCCATGGAAGTGGCAAAGATCCGAGACTCCTTCCCAACACTTCAGGCAGCTGGCCCTGAAACAA
AGCTATGAGTCTTGGGCTGACACTGCCCAGGCACCTGCCACCAAAGAAATGAGTGGGAATAAGA
ACTGAGACGCCTTTAGGGACACAGCCAGGCCTAAGTGGCCCAGCTGCCTATCCTCTTGCATTTT
AATGCTACTCTGCACATACACCAGAGAAGAGAGCGTAGGTGTCCTGCCTCCACCCACCCTCATC
CCCACACTACCTTCTGACCTCACAAGCGAAGAGAATCTTGTTAGTGGCAAGAAGATCGTTGCTG
TCCACCTGACCAAGAAGATGCTACTGCATCTGGAGGCCCAGCAGGGGAAGAAGGTGGAGAGCAC
TGTGCAGCCTGGGCTCTCTTCTGTCATACCAAGAAGCCAGGCCATGAGTTTTGGTGCTAGGGTT
CTTTTGAGTTTGAATATGGGGTCTGATCCTGCCTTTGGGGTCAACATGGACCCTGAATACAGGT
CTGGAACACCAGCTGGGGTAAGCACAGGGAAACACCAACCACCACAATCCATTTTATTTATGTA
AACATGATGCTTTATGAAGAAGCCTCCGAGTGGCCCTATGAGCCCTTAGTAGGTAACATGACGA
ACTGGGATACCTTGAGATATGAGGCAAGCCCCAAGACACCAATGAACCATTCTCCCCTACTTTG
ACCCACACTTCCTCTATTACTCCCCAGAGTTGTTGGCAACCTTTGGCCACTCATGGCCATAGAG
ACAAATGAGTTAGCTTATTCCCATGACACAGGCCAGGCCAAAGCTGACAGTGGCAGCAAGATA

hide sequence

RefSeq Acc Id:

XM_039099690 ⟹ XP_038955618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	68,204,730 - 68,236,247 (+)	NCBI
mRatBN7.2	X	64,164,545 - 64,196,052 (+)	NCBI

RefSeq Acc Id:

XM_039099691 ⟹ XP_038955619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	68,119,276 - 68,236,247 (+)	NCBI
mRatBN7.2	X	64,079,079 - 64,195,530 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101319	(Get FASTA)	NCBI Sequence Viewer
	XP_006257136	(Get FASTA)	NCBI Sequence Viewer
	XP_038955618	(Get FASTA)	NCBI Sequence Viewer
	XP_038955619	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95951	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000042131
	ENSRNOP00000042131.4
	ENSRNOP00000104319
	ENSRNOP00000104319.1
	ENSRNOP00000109884
	ENSRNOP00000109884.1
	ENSRNOP00000111209
	ENSRNOP00000111209.1

RefSeq Acc Id:

NP_001101319 ⟸ NM_001107849

- UniProtKB:

A6IQ62 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTLNNCASMKLEVHFRCKQDDDSEEEEQCTISSHWAFEQESKCGSLTGSSALLAPPSPSLPGTS
SCESVLTELSAASLPAISVSLSPESADLPLLGHVPSPSNQPFLSPTQGQEGSQDKVKKHYSRSF
LKHLESLRRKEKGDSRQTEPEQRLATSEKATKASSFRTCRGLLSVGFHRAKNRVTTSPRVRDGE
TQKTWEAWPVATFRHPQPNRRHDCLVHVPRDHKPGTFPRSLSIESLCPDDSRHLADWQPNRCWG
YEGRRGSCGSTGSHASTYDNLPELYPAEPIQAEAEDEDEEGEGSYAHLDDILEHVWGLQQRVEL
WSQAMYPDLRPGDKEEEEEEEEEATSSVEIATAEVEGQDEALAQAESQVHRGFPTEVKEEVPLI
VLDQAPTVVEPLVQAEAPAQAQHPEQDANSAAEPISASSLSVEEGHSISDTAVSSSELDSSGNS
VNEADVADALAGPNASVPRERRDSGVGASLTRPCRKLRWHSFQNSHRPSLNSESLEINRQFAGQ
INLLHKGSLLRLTGFMEKYTVPHKQAWVWSMPKFMKRNKTPDYRGHHVFGVPPLIHVQRTGQPL
PQSIQQAMRYLRSQCLDQVGIFRKSGVKSRIQSLRQMNETSPDNVCYEGQSAYDVADLLKQYFR
DLPEPIFTSKLTTTFLQIYQLLPKEQWLAAAQAATLLLPDENREVLQTLLYFLSDIASAEENQM
TAGNLAVCLAPSIFHLNVSKKDSPSPRIKSKRSLVGRPGPRDLSENMAATQGLSHMISDCKKLF
QVPQDMVVQLCGSYSAAELTPPGPALAELRQAQAAGVSLSLYMEESVQELLRDAAERFKGWTNV
PGPQHTELACRKAPDGHPLRMWKASTEVAAPPAVVLHRVLRERALWDEDLLRAQVLEALMPGVE
LYHYVTDSMAPHPCRDFVVLRMWRSDLPRGGCLLVSQSLDPEQPVPESGVRALMLTSQYLMEPC
GLGRSRLTHICRADLRGRSPDWYNKVFGHLCAMEVAKIRDSFPTLQAAGPETKL

hide sequence

RefSeq Acc Id:	XP_006257136 ⟸ XM_006257074
- Peptide Label:	isoform X2
- UniProtKB:	D4A5B9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLLDVFWACFRKVKCFPSLPGRRNVEAEAKKACEWLRATGFPQYAQLFEEGVFPLDIGSVKKD YSFLDQDSLGALCRRLMTLNNCASMKLEVHFRCKQDDDSEEEEQCTISSHWAFEQESKCGSLTG SSALLAPPSPSLPGTSSCESVLTELSAASLPAISVSLSPESADLPLLGHVPSPSNQPFLSPTQG QEGSQDKVKKHYSRSFLKHLESLRRKEKGDSRQTEPEQRLATSEKATKASSFRTCRGLLSVGFH RAKNRVTTSPRVRDGETQKTWEAWPVATFRHPQPNRRHDCLVHVPRDHKPGTFPRSLSIESLCP DDSRHLADWQPNRCWGYEGRRGSCGSTGSHASTYDNLPELYPAEPIQAEAEDEDEEGEGSYAHL DDILEHVWGLQQRVELWSQAMYPDLRPGDKEEEEEEEEEATSSVEIATAEVEGQDEALAQAESQ VHRGFPTEVKEEVPLIVLDQAPTVVEPLVQAEAPAQAQHPEQDANSAAEPISASSLSVEEGHSI SDTAVSSSELDSSGNSVNEADVADALAGPNASVPRERRDSGVGASLTRPCRKLRWHSFQNSHRP SLNSESLEINRQFAGQINLLHKGSLLRLTGFMEKYTVPHKQAWVWSMPKFMKRNKTPDYRGHHV FGVPPLIHVQRTGQPLPQSIQQAMRYLRSQCLDQVGIFRKSGVKSRIQSLRQMNETSPDNVCYE GQSAYDVADLLKQYFRDLPEPIFTSKLTTTFLQIYQLLPKEQWLAAAQAATLLLPDENREVLQT LLYFLSDIASAEENQMTAGNLAVCLAPSIFHLNVSKKDSPSPRIKSKRSLVGRPGPRDLSENMA ATQGLSHMISDCKKLFQVPQDMVVQLCGSYSAAELTPPGPALAELRQAQAAGVSLSLYMEESVQ ELLRDAAERFKGWTNVPGPQHTELACRKAPDGHPLRMWKASTEVAAPPAVVLHRVLRERALWDE DLLRAQVLEALMPGVELYHYVTDSMAPHPCRDFVVLRMWRSDLPRGGCLLVSQSLDPEQPVPES GVRALMLTSQYLMEPCGLGRSRLTHICRADLRGRSPDWYNKVFGHLCAMEVAKIRDSFPTLQAA GPETKL hide sequence

Ensembl Acc Id:

ENSRNOP00000042131 ⟸ ENSRNOT00000043872

Ensembl Acc Id:

ENSRNOP00000068015 ⟸ ENSRNOT00000077039

Ensembl Acc Id:

ENSRNOP00000067895 ⟸ ENSRNOT00000075995

Ensembl Acc Id:

ENSRNOP00000070263 ⟸ ENSRNOT00000081662

Ensembl Acc Id:

ENSRNOP00000067952 ⟸ ENSRNOT00000076690

RefSeq Acc Id:	XP_038955619 ⟸ XM_039099691
- Peptide Label:	isoform X3
- UniProtKB:	A6IQ62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955618 ⟸ XM_039099690
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000109884 ⟸ ENSRNOT00000143878

Ensembl Acc Id:

ENSRNOP00000111209 ⟸ ENSRNOT00000153437

Ensembl Acc Id:

ENSRNOP00000104319 ⟸ ENSRNOT00000123604

Protein Domains

Rho-GAP START

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A5B9-F1-model_v2	AlphaFold	D4A5B9	1-1014	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701861

Promoter ID:

EPDNEW_R12381

Type:

single initiation site

Name:

Stard8_1

Description:

StAR-related lipid transfer domain containing 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R12382

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	68,713,141 - 68,713,201	EPDNEW

RGD ID:

13701862

Promoter ID:

EPDNEW_R12382

Type:

initiation region

Name:

Stard8_2

Description:

StAR-related lipid transfer domain containing 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R12381

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	68,752,629 - 68,752,689	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560770	AgrOrtholog
BioCyc Gene	G2FUF-2156	BioCyc
Ensembl Genes	ENSRNOG00000033883	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000043872	ENTREZGENE
	ENSRNOT00000043872.6	UniProtKB/TrEMBL
	ENSRNOT00000123604	ENTREZGENE
	ENSRNOT00000123604.1	UniProtKB/TrEMBL
	ENSRNOT00000143878	ENTREZGENE
	ENSRNOT00000143878.1	UniProtKB/TrEMBL
	ENSRNOT00000153437	ENTREZGENE
	ENSRNOT00000153437.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.2070	UniProtKB/TrEMBL
	1.10.555.10	UniProtKB/TrEMBL
	3.30.530.20	UniProtKB/TrEMBL
InterPro	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SAM/pointed_sf	UniProtKB/TrEMBL
	START-like_dom	UniProtKB/TrEMBL
	START_lipid-bd	UniProtKB/TrEMBL
NCBI Gene	312113	ENTREZGENE
PANTHER	RHO-TYPE GTPASE ACTIVATING PROTEIN	UniProtKB/TrEMBL
	STAR-RELATED LIPID TRANSFER PROTEIN 8	UniProtKB/TrEMBL
Pfam	RhoGAP	UniProtKB/TrEMBL
	START	UniProtKB/TrEMBL
PhenoGen	Stard8	PhenoGen
PROSITE	RHOGAP	UniProtKB/TrEMBL
	START	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000033883	RatGTEx
SMART	RhoGAP	UniProtKB/TrEMBL
	START	UniProtKB/TrEMBL
Superfamily-SCOP	Bet v1-like	UniProtKB/TrEMBL
	Rho_GAP	UniProtKB/TrEMBL
	SSF47769	UniProtKB/TrEMBL
UniProt	A0ABK0L489_RAT	UniProtKB/TrEMBL
	A0ABK0LXN4_RAT	UniProtKB/TrEMBL
	A0ABK0M4L4_RAT	UniProtKB/TrEMBL
	A6IQ62	ENTREZGENE, UniProtKB/TrEMBL
	D4A5B9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-12	Stard8	StAR-related lipid transfer domain containing 8	Stard8	StAR-related lipid transfer (START) domain containing 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-23	Stard8	StAR-related lipid transfer (START) domain containing 8	Stard8	START domain containing 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Stard8	START domain containing 8	Stard8_predicted	START domain containing 8 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Stard8_predicted	START domain containing 8 (predicted)	RGD1560770_predicted	similar to START domain containing 8 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1560770_predicted	similar to START domain containing 8 (predicted)	LOC312113	similar to START domain containing 8	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC312113	similar to START domain containing 8			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD