Gipc2 (GIPC PDZ domain containing family, member 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gipc2 (GIPC PDZ domain containing family, member 2) Rattus norvegicus
Analyze
Symbol: Gipc2
Name: GIPC PDZ domain containing family, member 2
RGD ID: 1560751
Description: Predicted to enable identical protein binding activity. Predicted to be located in cytoplasm. Orthologous to human GIPC2 (GIPC PDZ domain containing family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100361187; LOC365960; MGC116274; PDZ domain-containing protein GIPC2; semaF cytoplasmic domain associated protein 2; similar to semaF cytoplasmic domain associated protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,690,742 - 243,770,199 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2243,690,748 - 243,770,199 (-)EnsemblGRCr8
mRatBN7.22241,030,764 - 241,110,236 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,030,770 - 241,110,236 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2248,844,744 - 248,924,065 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,731,767 - 246,811,077 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,631,266 - 241,710,398 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2243,607,721 - 243,686,993 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive2243,731,521 - 243,810,796 (-)NCBILyon_Normotensive
Lyon_Hypertensive2243,418,861 - 243,498,131 (-)NCBILyon_Hypertensive
F344_StmMcwi2243,482,003 - 243,559,023 (-)NCBIF344_StmMcwi
Rnor_6.02257,293,161 - 257,377,982 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,293,167 - 257,376,756 (-)Ensemblrn6Rnor6.0
Rnor_5.02275,974,237 - 276,052,941 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42250,704,151 - 250,733,988 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2232,967,285 - 233,044,841 (-)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4,6-trinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
ampicillin  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
caffeine  (ISO)
CGP 52608  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
dicrotophos  (ISO)
epoxiconazole  (ISO)
Evodiamine  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glycidol  (EXP)
indole-3-methanol  (EXP)
L-methionine  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methoxychlor  (EXP)
metronidazole  (EXP)
microcystin-LR  (ISO)
Monobutylphthalate  (ISO)
N-nitrosodiethylamine  (ISO)
neomycin  (EXP)
nickel atom  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
orphenadrine  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
quercetin  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
vancomycin  (EXP)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:19056867   PMID:23376485   PMID:25416956  


Genomics

Comparative Map Data
Gipc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,690,742 - 243,770,199 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2243,690,748 - 243,770,199 (-)EnsemblGRCr8
mRatBN7.22241,030,764 - 241,110,236 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,030,770 - 241,110,236 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2248,844,744 - 248,924,065 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,731,767 - 246,811,077 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,631,266 - 241,710,398 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2243,607,721 - 243,686,993 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive2243,731,521 - 243,810,796 (-)NCBILyon_Normotensive
Lyon_Hypertensive2243,418,861 - 243,498,131 (-)NCBILyon_Hypertensive
F344_StmMcwi2243,482,003 - 243,559,023 (-)NCBIF344_StmMcwi
Rnor_6.02257,293,161 - 257,377,982 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,293,167 - 257,376,756 (-)Ensemblrn6Rnor6.0
Rnor_5.02275,974,237 - 276,052,941 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42250,704,151 - 250,733,988 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2232,967,285 - 233,044,841 (-)NCBICelera
Cytogenetic Map2q45NCBI
GIPC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,044,970 - 78,138,444 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,979,542 - 78,138,448 (+)Ensemblhg38GRCh38
GRCh37178,510,654 - 78,604,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,284,177 - 78,375,700 (+)NCBIBuild 36Build 36hg18NCBI36
Celera176,750,654 - 76,842,166 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,643,315 - 76,734,789 (+)NCBIHuRef
CHM1_1178,627,965 - 78,719,504 (+)NCBICHM1_1
T2T-CHM13v2.0177,883,878 - 77,977,248 (+)NCBIT2T-CHM13v2.0
Gipc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,799,476 - 151,871,537 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,799,170 - 151,871,867 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383152,093,839 - 152,165,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,093,533 - 152,166,230 (-)Ensemblmm10GRCm38
MGSCv373151,756,805 - 151,828,864 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363152,031,227 - 152,103,286 (-)NCBIMGSCv36mm8
Celera3158,565,187 - 158,638,394 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map376.97NCBI
Gipc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,119,566 - 15,161,798 (-)Ensembl
ChiLan1.0NW_00495542315,113,049 - 15,183,211 (-)NCBIChiLan1.0ChiLan1.0
GIPC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,751,403 - 148,844,074 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11147,913,984 - 148,006,652 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,263,593 - 77,355,985 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,346,181 - 79,437,783 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,346,181 - 79,437,783 (+)EnsemblpanPan2panpan1.1
GIPC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,769,104 - 68,859,046 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl668,770,949 - 68,853,912 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha671,425,754 - 71,512,729 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0669,353,263 - 69,440,320 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,354,470 - 69,444,211 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1668,860,811 - 68,947,558 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,804,858 - 68,891,837 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,292,458 - 69,378,662 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gipc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,309,050 - 89,395,678 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365714,819,581 - 4,905,968 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365714,818,676 - 4,903,544 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GIPC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,077,638 - 135,217,785 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16135,129,298 - 135,217,831 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,316,406 - 125,399,476 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GIPC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,034,004 - 55,130,362 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,032,003 - 55,130,233 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603362,384,411 - 62,484,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gipc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474219,145,093 - 19,216,670 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474219,145,861 - 19,219,995 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gipc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1385,157,747 - 85,236,440 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gipc2
304 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:129
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000065811
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
RH141834  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,030,785 - 241,031,005 (+)MAPPERmRatBN7.2
Rnor_6.02257,293,183 - 257,293,402NCBIRnor6.0
Rnor_5.02275,974,259 - 275,974,478UniSTSRnor5.0
RGSC_v3.42250,634,163 - 250,634,382UniSTSRGSC3.4
Celera2232,967,307 - 232,967,526UniSTS
RH 3.4 Map21649.81UniSTS
Cytogenetic Map2q45UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 153 91 90 59 73 59 6 337 173 11 132 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000065811   ⟹   ENSRNOP00000063118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,690,748 - 243,770,199 (-)Ensembl
mRatBN7.2 Ensembl2241,030,770 - 241,110,236 (-)Ensembl
Rnor_6.0 Ensembl2257,293,167 - 257,376,756 (-)Ensembl
RefSeq Acc Id: NM_001037210   ⟹   NP_001032287
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,690,742 - 243,770,199 (-)NCBI
mRatBN7.22241,030,764 - 241,110,236 (-)NCBI
Dahl_SR_JrHsd2243,607,721 - 243,686,993 (-)NCBI
Lyon_Normotensive2243,731,521 - 243,810,796 (-)NCBI
Lyon_Hypertensive2243,418,861 - 243,498,131 (-)NCBI
F344_StmMcwi2243,482,003 - 243,559,023 (-)NCBI
Rnor_6.02257,293,161 - 257,376,756 (-)NCBI
Rnor_5.02275,974,237 - 276,052,941 (-)NCBI
RGSC_v3.42250,704,151 - 250,733,988 (+)RGD
Celera2232,967,285 - 233,044,841 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102808   ⟹   XP_038958736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,690,742 - 243,740,981 (-)NCBI
mRatBN7.22241,030,764 - 241,110,060 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001032287 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958736 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00258 (Get FASTA)   NCBI Sequence Viewer  
  EDL82484 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063118
  ENSRNOP00000063118.4
GenBank Protein Q498D9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001032287   ⟸   NM_001037210
- UniProtKB: Q498D9 (UniProtKB/Swiss-Prot),   A6HWJ8 (UniProtKB/TrEMBL),   F1M018 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063118   ⟸   ENSRNOT00000065811
RefSeq Acc Id: XP_038958736   ⟸   XM_039102808
- Peptide Label: isoform X1
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q498D9-F1-model_v2 AlphaFold Q498D9 1-314 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691822
Promoter ID:EPDNEW_R2347
Type:initiation region
Name:Gipc2_1
Description:GIPC PDZ domain containing family, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02257,376,767 - 257,376,827EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560751 AgrOrtholog
BioCyc Gene G2FUF-50810 BioCyc
Ensembl Genes ENSRNOG00000042152 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000065811 ENTREZGENE
  ENSRNOT00000065811.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7442312 IMAGE-MGC_LOAD
InterPro GH2_GIPC UniProtKB/Swiss-Prot
  GIPC1-3_GH1 UniProtKB/Swiss-Prot
  GIPC1/2/3 UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot
  PDZ_sf UniProtKB/Swiss-Prot
KEGG Report rno:365960 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116274 IMAGE-MGC_LOAD
NCBI Gene 365960 ENTREZGENE
PANTHER PDZ DOMAIN-CONTAINING PROTEIN GIPC2 UniProtKB/Swiss-Prot
  PTHR12259 UniProtKB/Swiss-Prot
Pfam GIPC1_GH1 UniProtKB/Swiss-Prot
  GIPC1_GH2 UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot
PhenoGen Gipc2 PhenoGen
PIRSF UCP038083_GIPC UniProtKB/Swiss-Prot
PROSITE PDZ UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000042152 RatGTEx
SMART PDZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot
UniProt A6HWJ8 ENTREZGENE, UniProtKB/TrEMBL
  F1M018 ENTREZGENE, UniProtKB/TrEMBL
  GIPC2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Gipc2  GIPC PDZ domain containing family, member 2  LOC100361187  GIPC PDZ domain containing family, member 2  Data merged from RGD:2320674 737654 PROVISIONAL
2010-05-05 LOC100361187  GIPC PDZ domain containing family, member 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-05 Gipc2  GIPC PDZ domain containing family, member 2  LOC365960  similar to semaF cytoplasmic domain associated protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC365960  similar to semaF cytoplasmic domain associated protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL