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Gene: Bbs10 (Bardet-Biedl syndrome 10) Rattus norvegicus

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Symbol:

Bbs10

Name:

Bardet-Biedl syndrome 10

RGD ID:

1560748

Description:

Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in chaperone-mediated protein complex assembly; non-motile cilium assembly; and photoreceptor cell maintenance. Predicted to act upstream of or within several processes, including neuronal action potential; retina morphogenesis in camera-type eye; and visual perception. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 10. Orthologous to human BBS10 (Bardet-Biedl syndrome 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Bardet-Biedl syndrome 10 (human); LOC500832; RGD1560748; similar to hypothetical protein FLJ23560

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BBS10 (Bardet-Biedl syndrome 10)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Bbs10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bbs10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BBS10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC100688777 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bbs10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BBS10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BBS10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bbs10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Bbs10 (Bardet-Biedl syndrome 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	BBS10 (Bardet-Biedl syndrome 10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Bbs10 (Bardet-Biedl syndrome 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bbs10 (Bardet-Biedl syndrome 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	bbs10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	48,637,324 - 48,640,395 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	48,637,356 - 48,640,391 (+)	Ensembl				GRCr8
mRatBN7.2	7	46,751,028 - 46,754,132 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	46,750,993 - 46,754,141 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	48,650,683 - 48,653,709 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	50,853,830 - 50,856,856 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	50,631,584 - 50,634,610 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	54,030,229 - 54,034,354 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	54,031,316 - 54,034,350 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	54,041,043 - 54,044,118 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	50,317,863 - 50,320,886 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	43,552,129 - 43,555,152 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

Bardet-Biedl syndrome 1 (ISO)

Bardet-Biedl syndrome 10 (ISO,ISS)

Bardet-Biedl Syndrome 6/10, Digenic (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

macular degeneration (ISO)

optic atrophy (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin M1 (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

formaldehyde (ISO)

furan (EXP,ISO)

gentamycin (EXP)

methimazole (EXP)

Monobutylphthalate (EXP)

okadaic acid (ISO)

paracetamol (EXP)

phenobarbital (ISO)

potassium chromate (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

triticonazole (EXP)

urethane (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chaperone-mediated protein complex assembly (IBA,IEA,ISO)

cone retinal bipolar cell differentiation (ISO)

DNA damage response (ISO)

intracellular protein localization (ISO)

negative regulation of neuron apoptotic process (ISO)

neuronal action potential (ISO)

non-motile cilium assembly (IEA,ISO)

photoreceptor cell differentiation (ISO)

photoreceptor cell maintenance (IEA,ISO)

regulation of protein-containing complex assembly (ISO)

response to endoplasmic reticulum stress (ISO)

response to light stimulus (ISO)

retina development in camera-type eye (ISO)

retinal cone cell differentiation (ISO)

retinal rod cell differentiation (ISO)

visual perception (ISO)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Recurrent CNVs and SNVs at the NPHP1 locus contribute pathogenic alleles to Bardet-Biedl syndrome.	Lindstrand A, etal., Am J Hum Genet. 2014 May 1;94(5):745-54. doi: 10.1016/j.ajhg.2014.03.017. Epub 2014 Apr 17.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17980398	PMID:20080638	PMID:20193073	PMID:22302990	PMID:22500027

Genomics

Comparative Map Data

Bbs10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	48,637,324 - 48,640,395 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	48,637,356 - 48,640,391 (+)	Ensembl				GRCr8
mRatBN7.2	7	46,751,028 - 46,754,132 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	46,750,993 - 46,754,141 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	48,650,683 - 48,653,709 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	50,853,830 - 50,856,856 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	50,631,584 - 50,634,610 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	54,030,229 - 54,034,354 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	54,031,316 - 54,034,350 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	54,041,043 - 54,044,118 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	50,317,863 - 50,320,886 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	43,552,129 - 43,555,152 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

BBS10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	76,344,474 - 76,348,415 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	76,344,474 - 76,348,437 (-)	Ensembl			hg38	GRCh38
GRCh37	12	76,738,254 - 76,742,195 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	75,262,397 - 75,266,353 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	76,404,216 - 76,408,172 (-)	NCBI		Celera
Cytogenetic Map	12	q21.2	NCBI
HuRef	12	73,790,430 - 73,794,386 (-)	NCBI		HuRef
CHM1_1	12	76,703,860 - 76,707,816 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	76,322,395 - 76,326,336 (-)	NCBI		T2T-CHM13v2.0

Bbs10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	111,134,540 - 111,137,597 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	111,134,540 - 111,137,588 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	111,298,679 - 111,301,736 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	111,298,679 - 111,301,727 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	110,735,735 - 110,738,792 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	110,702,789 - 110,706,282 (+)	NCBI		MGSCv36	mm8
Celera	10	113,232,400 - 113,235,457 (+)	NCBI		Celera
Cytogenetic Map	10	D1	NCBI
cM Map	10	58.46	NCBI

Bbs10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	15,571,073 - 15,574,791 (-)	Ensembl
ChiLan1.0	NW_004955405	15,571,458 - 15,574,568 (-)	NCBI	ChiLan1.0	ChiLan1.0

BBS10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	84,379,029 - 84,383,696 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	84,375,439 - 84,380,075 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	73,862,775 - 73,867,377 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	76,713,028 - 76,716,956 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	76,713,028 - 76,716,956 (-)	Ensembl			panPan2	panpan1.1

LOC100688777
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	19,302,988 - 19,334,763 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	19,331,876 - 19,335,583 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	19,788,066 - 19,819,690 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	19,646,036 - 19,657,550 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	15	19,243,010 - 19,274,520 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	19,304,566 - 19,316,044 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	19,432,535 - 19,444,024 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Bbs10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	41,082,653 - 41,089,515 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936568	4,638,637 - 4,644,502 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936568	4,640,611 - 4,644,627 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BBS10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	39,557,715 - 39,566,323 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	39,557,716 - 39,566,350 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	43,253,172 - 43,256,444 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BBS10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	71,921,816 - 71,925,164 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	71,921,893 - 71,924,551 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	173,623,293 - 173,626,605 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bbs10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	21,759,495 - 21,766,679 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624750	21,759,412 - 21,763,608 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Bbs10
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	189,469,378 - 189,472,497 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Bbs10
24 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	38
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000039096
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	21541977	51639954	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	21541977	51639954	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	42996226	58678836	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

RH130422

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	46,749,378 - 46,749,592 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	54,029,601 - 54,029,814	NCBI	Rnor6.0
Rnor_5.0	7	54,167,511 - 54,167,724	UniSTS	Rnor5.0
Rnor_5.0	7	54,039,365 - 54,039,578	UniSTS	Rnor5.0
RGSC_v3.4	7	50,316,140 - 50,316,353	UniSTS	RGSC3.4
Celera	7	43,550,406 - 43,550,619	UniSTS
RH 3.4 Map	7	391.0	UniSTS
Cytogenetic Map	7	q21	UniSTS

BE102942

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	46,753,892 - 46,754,079 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	54,034,115 - 54,034,301	NCBI	Rnor6.0
Rnor_5.0	7	54,043,879 - 54,044,065	UniSTS	Rnor5.0
RGSC_v3.4	7	50,320,654 - 50,320,840	UniSTS	RGSC3.4
Celera	7	43,554,920 - 43,555,106	UniSTS
RH 3.4 Map	7	390.1	UniSTS
Cytogenetic Map	7	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC160915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039096 ⟹ ENSRNOP00000037320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	48,637,356 - 48,640,391 (+)	Ensembl
mRatBN7.2 Ensembl	7	46,750,993 - 46,754,141 (+)	Ensembl
Rnor_6.0 Ensembl	7	54,031,316 - 54,034,350 (+)	Ensembl

RefSeq Acc Id:

NM_001109286 ⟹ NP_001102756

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	48,637,365 - 48,640,388 (+)	NCBI
mRatBN7.2	7	46,751,102 - 46,754,125 (+)	NCBI
Rnor_6.0	7	54,031,324 - 54,034,347 (+)	NCBI
Rnor_5.0	7	54,041,043 - 54,044,118 (+)	NCBI
RGSC_v3.4	7	50,317,863 - 50,320,886 (+)	RGD
Celera	7	43,552,129 - 43,555,152 (+)	RGD

Sequence:

show sequence

CATCGGTCCTGACCTTCTAAAGAAGTATTTACCCACAGCTCCGTTTCCATGGCGTCCCAGGGGT
CTGTGACAGCGGCACTGCGGGTGGCTGAGGTGCTGGAAACCATCGCGAACCGCTGCGTGGGGCC
CGAGGGCGGCCTGGTGTTGTGTACGAAGCCCACCGGCGAGGTGCTGCTTAGCAGGGATGGAGGT
TGCCTCCTGGAGGCGCTGCACTTAGAGCATCCCTTAGCCAGGATGATAGTGGCGTGTGTTTCCA
GTCACCTTAAAAAAACAGGAGATGGTGCTAAAACATTTATTATTTTTCTTTGCCATTTACTCAG
AGGACTTCATGCAATCGGAGAAAAAGAAAAAGACTCATTCACTTCTGAAGATATTCAGAGCCAT
GAAAGGCATTGGAAAAACTGCTGCCAGTGGAAATCTATTTCCCGGGCTCTGCTAAGGTTTCAGA
CACAAACGTTAGGTTGTATTGTAGACCAACATTTAAGCAGGCACTACCTCTCTGCCTTTTCTTC
ATCTGCTGAAGGAAGAACACTGTGCAGGCGCTCTCTGGAGTTGCTCCTGGAACCATACTTTTGT
GGAAGAGTGGGAAGAAACAACCACAGATTCATTTCACAGTTGATGTGTGACTACGTTTTCAAGT
GTATGGCTTGTGAAAGTGGGATTGAAGTATTTGAGTTTTTGGACAACTGTTTTGTGGAGTTGAA
TGTTGGCGTGACAGGCCTTCCTGTTTCAGAGTCTAGAATTGTGGATGGCCTTGTGCTTCCCAGA
GACTTTTCTGTGTACTGCCCAGCAGATGGTGGCATTAGGATGGTGATAGTAACCGAAATCCTCC
AGCCTCTGTTTTCATCGTCTAGCTCGGAATTTGTTCTCGACTCAGAAACACAGTTTCAGGCATC
TCAGAGTTGGATCATGGACAGGACAAAAACCGTAATGAACCACCTGCGTAGTCATAATGTAAAA
CTGCTCCTGTCCAGTGTGAAGCAACCAGACCTAGTTACTTATTGTGCAAGACTAAATAGCATCT
CAGTGGTGGAGTGTTTATCATCTGAGGAAGTTTCTCTCGTCCAGAGGATCACCGGTCTTTCTCC
TTGTGTCCTACCAGAGCTCGCTTCACAGTGTCACATTGCTGACAGTGCTTTGGTGAGGTTTTGT
AAACCCCTCATCGTTAGGTCCGGAAGGTATGCTCATCTCGGCTTGGTTAGCACGTGTGCATTCG
TACCTCACTGTGTAGTCCTTTGTGGACCAGTTCTGGGTCTTGTTCAACAGCATGAGAGTGCTTT
CCATGGAGCCTTTAAGATGCTTCGGCAGCTGTTCACTGACCTCGATCTAAATTGCATGATACAG
ACCAAAGAGCGACGTAACCCGAGCCCTCTTGCTGACAGCAGTAACAGAGAGAGCAGTCACTCAC
CCAAAACTGGTAAGTATCAGGACGTAGTAGCAAAGAACAAAGATAAACTGGAAACTCAAACACG
TTTAGAAGTATATCCACGTCTGGGGGCTTCGGATACAGAATTGATAACATGTAAGCTGTGGTCA
GCACACAAGGAGACATCAATAGATCCATCCCAAACAAATGAAATACCGAAGCGCTTATCTCCAG
AAAAAAGTAGGATAGTTGATAACTGTGAAGTGTTCCTTGAAAATAATCCCACTGGAAATCCTAC
AGCAGAAGACACTAGGACAGAAATGTCTTTCAAACATTTACAGGTCGCAGATAATCCTGGAGAA
GGGTACACATTGCCAGTGACATACAAGTCCCCAGATACCTGTCCTTCCCAGGCTCACTGTTCAT
CAGCTGTACCAGCAGGCTGTGTTCTGCCCGTGGGTGGACATTTTGAGATTTTGATGCATTTCTA
CCTTCTCAACTACGCCAAGCAATGCCGGCAATCAGACGACGCTGTCATCAGCATGTTAATAGCT
AATGCTCTTCTAGGTGTCCCTAAAATCCTTTATAAGCCCAAGAAGGGAAAAGACAGTTTCCCAC
ACATATACACTCGGGCTCTCCGTGCACTGCAAACCAGGCAACCCATAGTAAGTGGTCAGTCAGG
CTTCGAGTCAGTAGCTGGTAAGTACCAATTACTAACTTCAGTTCTTCAGTGTTTGATGAAAATA
TTAACCATTGATTTAATAATCAACGTCAAGAGACAGCCTCAGAAAACTGGTGACCAAGAATCAG
AAGACGAACTTTAACACTCAGGTTTTTTTTGTTGTTGTTTTTTGTTGTTGTTGTTGTTGTTGTT
GATGTTGTTGCTCGAACTTTCAGTCTATGGCCAGGGAGATGGCCCAGTGAGCAAAAGCATTTAA
TGCCAAACCTGACTACCTGGGGTCAACACCCAGGGTGGAAGGAGAGGATGAAGGAAAAATGTAT
TCATCTCAAGGTAAATATTAAAACAGGCTTCTGGCTGGCTTTGGAGCCAATCCTGTCCTTAAAT
ACATTGAGTCCAGCAGACCATTCAGACACAGAGATCAGCTCTGTGGAACAAAACCTGGCTAAAT
ATCTCTCCTTCCTGTCTCGGGTCTCTGCTAGTCTCTGTGTAAGGAAGGTTGTGTCTATATTTCC
CCTTTCTGTATCTTTTTTTCCACTTCATTTCCTTGAACTTTCTGTCTGTCATAGAGCCAGGTAA
TCTCCTGACTATGTAAAGCAGTAAATAAAAGTCAAATTTCCCT

hide sequence

RefSeq Acc Id:

XM_006241323 ⟹ XP_006241385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	48,637,324 - 48,640,395 (+)	NCBI
mRatBN7.2	7	46,751,028 - 46,754,132 (+)	NCBI
Rnor_6.0	7	54,030,229 - 54,034,354 (+)	NCBI
Rnor_5.0	7	54,041,043 - 54,044,118 (+)	NCBI

Sequence:

show sequence

GTGTGTGTGTGAAAAAGATGGGTACAGGCCTGACACGGATTGTGACAGTATCCCTAATGTATGT
TTTACTTGGTACTTCATATTCTTTTTTAAAAATAAGTGGAAATTATACCTATTTCATACATTAA
AAATGAGGCTCAGCATATTTAAATGACCCCAAAAACTACACAAGGCAGTCTTTTTCAGGTAAAA
GCCCTTCTGAATCATGACTACATAGTGCACTGAAGTAGAACCTTGATTGTACTGTTTAAATGTT
TGAAATAACCCACTATTTCAGTCTAAAGCCCAGCGCTGAATGCAACAAGTTAAAAAACACTGAA
ATGCTGTTTTGCCCATATTGAGTGAGCCTCAGATAAGCCCCAGGAAAGCTTTACTCTTGATTTT
GTCTTCCTTTCTCCCCATTTTAACTTGCTCCTCAGAATCCACTTGCTACTTCTAGAAATAATGG
CAATGTGGAATAAGGAAACGTCATTAAACATCATTGAGTATCTACAAGATCACTTTCCTGCCAA
CACTGACAGTTCCTGGATGTAATGGATGACTGAAAGAAGCACAGCTATGAACCCAGCACTCATC
CTCTCCCTGAAGCCTCTGTGTTTCCATACCTGAAACGTTTCTGCTTTGGGATTGTATGCAATAC
ATGAGGTTAATGTGTTGAATCTTACAATGTGAATAAAGGGCAAACATCTACTTCTGCTAAAGTG
GTTGAACTAGGTGGGGTTTCTTCCAAACCTGGATGCAGACAAGGTAGCACACCCCAGCGGAAGA
CACAAGCCTAGAAATGGCCATGTCCAAGTTCTCCGTGTCTGTCCTGCACCCTAAAACCGTTTGC
GTGAAGGCAAGGAGAGCAAATGATACGGCAGGGACACTAGAGAAGTAAGCCCGAGATGGGGGCG
GTACCCATGCCCTTCACCCGAGCCCTTCCTTCTTAGACCTAGCCGTGTAGTGGCCAGAGACGCC
TGCGGGCCGGGCCGTGAGCCAGGAAGGTAGACACTAAAGGACTGTGGCTGGCGGGCTCCACCCT
ACCTATTGGGCTCTTCCTCCAAGCGCTACTGCACTTCCGCCTTTCTCTACGCCTCTTCCGTTTC
CGCCCTCCATCGGTCCTGACCTTCTAAAGAAGTATTTACCCACAGCTCCGTTTCCATGGCGTCC
CAGGGGTCTGTGACAGCGGCACTGCGGGTGGCTGAGGTGCTGGAAACCATCGCGAACCGCTGCG
TGGGGCCCGAGGGCGGCCTGGTGTTGTGTACGAAGCCCACCGGCGAGGTGCTGCTTAGCAGGGA
TGGAGGTTGCCTCCTGGAGGCGCTGCACTTAGAGCATCCCTTAGCCAGAGGACTTCATGCAATC
GGAGAAAAAGAAAAAGACTCATTCACTTCTGAAGATATTCAGAGCCATGAAAGGCATTGGAAAA
ACTGCTGCCAGTGGAAATCTATTTCCCGGGCTCTGCTAAGGTTTCAGACACAAACGTTAGGTTG
TATTGTAGACCAACATTTAAGCAGGCACTACCTCTCTGCCTTTTCTTCATCTGCTGAAGGAAGA
ACACTGTGCAGGCGCTCTCTGGAGTTGCTCCTGGAACCATACTTTTGTGGAAGAGTGGGAAGAA
ACAACCACAGATTCATTTCACAGTTGATGTGTGACTACGTTTTCAAGTGTATGGCTTGTGAAAG
TGGGATTGAAGTATTTGAGTTTTTGGACAACTGTTTTGTGGAGTTGAATGTTGGCGTGACAGGC
CTTCCTGTTTCAGAGTCTAGAATTGTGGATGGCCTTGTGCTTCCCAGAGACTTTTCTGTGTACT
GCCCAGCAGATGGTGGCATTAGGATGGTGATAGTAACCGAAATCCTCCAGCCTCTGTTTTCATC
GTCTAGCTCGGAATTTGTTCTCGACTCAGAAACACAGTTTCAGGCATCTCAGAGTTGGATCATG
GACAGGACAAAAACCGTAATGAACCACCTGCGTAGTCATAATGTAAAACTGCTCCTGTCCAGTG
TGAAGCAACCAGACCTAGTTACTTATTGTGCAAGACTAAATAGCATCTCAGTGGTGGAGTGTTT
ATCATCTGAGGAAGTTTCTCTCGTCCAGAGGATCACCGGTCTTTCTCCTTGTGTCCTACCAGAG
CTCGCTTCACAGTGTCACATTGCTGACAGTGCTTTGGTGAGGTTTTGTAAACCCCTCATCGTTA
GGTCCGGAAGGTATGCTCATCTCGGCTTGGTTAGCACGTGTGCATTCGTACCTCACTGTGTAGT
CCTTTGTGGACCAGTTCTGGGTCTTGTTCAACAGCATGAGAGTGCTTTCCATGGAGCCTTTAAG
ATGCTTCGGCAGCTGTTCACTGACCTCGATCTAAATTGCATGATACAGACCAAAGAGCGACGTA
ACCCGAGCCCTCTTGCTGACAGCAGTAACAGAGAGAGCAGTCACTCACCCAAAACTGGTAAGTA
TCAGGACGTAGTAGCAAAGAACAAAGATAAACTGGAAACTCAAACACGTTTAGAAGTATATCCA
CGTCTGGGGGCTTCGGATACAGAATTGATAACATGTAAGCTGTGGTCAGCACACAAGGAGACAT
CAATAGATCCATCCCAAACAAATGAAATACCGAAGCGCTTATCTCCAGAAAAAAGTAGGATAGT
TGATAACTGTGAAGTGTTCCTTGAAAATAATCCCACTGGAAATCCTACAGCAGAAGACACTAGG
ACAGAAATGTCTTTCAAACATTTACAGGTCGCAGATAATCCTGGAGAAGGGTACACATTGCCAG
TGACATACAAGTCCCCAGATACCTGTCCTTCCCAGGCTCACTGTTCATCAGCTGTACCAGCAGG
CTGTGTTCTGCCCGTGGGTGGACATTTTGAGATTTTGATGCATTTCTACCTTCTCAACTACGCC
AAGCAATGCCGGCAATCAGACGACGCTGTCATCAGCATGTTAATAGCTAATGCTCTTCTAGGTG
TCCCTAAAATCCTTTATAAGCCCAAGAAGGGAAAAGACAGTTTCCCACACATATACACTCGGGC
TCTCCGTGCACTGCAAACCAGGCAACCCATAGTAAGTGGTCAGTCAGGCTTCGAGTCAGTAGCT
GGTAAGTACCAATTACTAACTTCAGTTCTTCAGTGTTTGATGAAAATATTAACCATTGATTTAA
TAATCAACGTCAAGAGACAGCCTCAGAAAACTGGTGACCAAGAATCAGAAGACGAACTTTAACA
CTCAGGTTTTTTTTGTTGTTGTTTTTTGTTGTTGTTGTTGTTGTTGTTGATGTTGTTGCTCGAA
CTTTCAGTCTATGGCCAGGGAGATGGCCCAGTGAGCAAAAGCATTTAATGCCAAACCTGACTAC
CTGGGGTCAACACCCAGGGTGGAAGGAGAGGATGAAGGAAAAATGTATTCATCTCAAGGTAAAT
ATTAAAACAGGCTTCTGGCTGGCTTTGGAGCCAATCCTGTCCTTAAATACATTGAGTCCAGCAG
ACCATTCAGACACAGAGATCAGCTCTGTGGAACAAAACCTGGCTAAATATCTCTCCTTCCTGTC
TCGGGTCTCTGCTAGTCTCTGTGTAAGGAAGGTTGTGTCTATATTTCCCCTTTCTGTATCTTTT
TTTCCACTTCATTTCCTTGAACTTTCTGTCTGTCATAGAGCCAGGTAATCTCCTGACTATGTAA
AGCAGTAAATAAAAGTCAAATTTCCCTTGTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102756	(Get FASTA)	NCBI Sequence Viewer
	XP_006241385	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI60915	(Get FASTA)	NCBI Sequence Viewer
	EDM16736	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037320
	ENSRNOP00000037320.4

RefSeq Acc Id:

NP_001102756 ⟸ NM_001109286

- UniProtKB:

B1H296 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASQGSVTAALRVAEVLETIANRCVGPEGGLVLCTKPTGEVLLSRDGGCLLEALHLEHPLARMI
VACVSSHLKKTGDGAKTFIIFLCHLLRGLHAIGEKEKDSFTSEDIQSHERHWKNCCQWKSISRA
LLRFQTQTLGCIVDQHLSRHYLSAFSSSAEGRTLCRRSLELLLEPYFCGRVGRNNHRFISQLMC
DYVFKCMACESGIEVFEFLDNCFVELNVGVTGLPVSESRIVDGLVLPRDFSVYCPADGGIRMVI
VTEILQPLFSSSSSEFVLDSETQFQASQSWIMDRTKTVMNHLRSHNVKLLLSSVKQPDLVTYCA
RLNSISVVECLSSEEVSLVQRITGLSPCVLPELASQCHIADSALVRFCKPLIVRSGRYAHLGLV
STCAFVPHCVVLCGPVLGLVQQHESAFHGAFKMLRQLFTDLDLNCMIQTKERRNPSPLADSSNR
ESSHSPKTGKYQDVVAKNKDKLETQTRLEVYPRLGASDTELITCKLWSAHKETSIDPSQTNEIP
KRLSPEKSRIVDNCEVFLENNPTGNPTAEDTRTEMSFKHLQVADNPGEGYTLPVTYKSPDTCPS
QAHCSSAVPAGCVLPVGGHFEILMHFYLLNYAKQCRQSDDAVISMLIANALLGVPKILYKPKKG
KDSFPHIYTRALRALQTRQPIVSGQSGFESVAGKYQLLTSVLQCLMKILTIDLIINVKRQPQKT
GDQESEDEL

hide sequence

RefSeq Acc Id:	XP_006241385 ⟸ XM_006241323
- Peptide Label:	isoform X1
- UniProtKB:	F7EKF1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASQGSVTAALRVAEVLETIANRCVGPEGGLVLCTKPTGEVLLSRDGGCLLEALHLEHPLARGL HAIGEKEKDSFTSEDIQSHERHWKNCCQWKSISRALLRFQTQTLGCIVDQHLSRHYLSAFSSSA EGRTLCRRSLELLLEPYFCGRVGRNNHRFISQLMCDYVFKCMACESGIEVFEFLDNCFVELNVG VTGLPVSESRIVDGLVLPRDFSVYCPADGGIRMVIVTEILQPLFSSSSSEFVLDSETQFQASQS WIMDRTKTVMNHLRSHNVKLLLSSVKQPDLVTYCARLNSISVVECLSSEEVSLVQRITGLSPCV LPELASQCHIADSALVRFCKPLIVRSGRYAHLGLVSTCAFVPHCVVLCGPVLGLVQQHESAFHG AFKMLRQLFTDLDLNCMIQTKERRNPSPLADSSNRESSHSPKTGKYQDVVAKNKDKLETQTRLE VYPRLGASDTELITCKLWSAHKETSIDPSQTNEIPKRLSPEKSRIVDNCEVFLENNPTGNPTAE DTRTEMSFKHLQVADNPGEGYTLPVTYKSPDTCPSQAHCSSAVPAGCVLPVGGHFEILMHFYLL NYAKQCRQSDDAVISMLIANALLGVPKILYKPKKGKDSFPHIYTRALRALQTRQPIVSGQSGFE SVAGKYQLLTSVLQCLMKILTIDLIINVKRQPQKTGDQESEDEL hide sequence

Ensembl Acc Id:

ENSRNOP00000037320 ⟸ ENSRNOT00000039096

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1H296-F1-model_v2	AlphaFold	B1H296	1-713	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695189

Promoter ID:

EPDNEW_R5714

Type:

initiation region

Name:

Bbs10_1

Description:

Bardet-Biedl syndrome 10

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	54,031,305 - 54,031,365	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560748	AgrOrtholog
BioCyc Gene	G2FUF-34126	BioCyc
Ensembl Genes	ENSRNOG00000026913	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039096	ENTREZGENE
	ENSRNOT00000039096.5	UniProtKB/TrEMBL
Gene3D-CATH	1.10.560.10	UniProtKB/TrEMBL
	3.30.260.10	UniProtKB/TrEMBL
	3.50.7.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7457522	IMAGE-MGC_LOAD
InterPro	BBS10	UniProtKB/TrEMBL
	Cpn60/TCP-1	UniProtKB/TrEMBL
	GroEL-like_apical_dom_sf	UniProtKB/TrEMBL
	GROEL-like_equatorial	UniProtKB/TrEMBL
	TCP-1-like_intermed_sf	UniProtKB/TrEMBL
KEGG Report	rno:500832	UniProtKB/TrEMBL
MGC_CLONE	MGC:188655	IMAGE-MGC_LOAD
NCBI Gene	500832	ENTREZGENE
PANTHER	BARDET-BIEDL SYNDROME 10 PROTEIN	UniProtKB/TrEMBL
	PTHR14667	UniProtKB/TrEMBL
Pfam	Cpn60_TCP1	UniProtKB/TrEMBL
PhenoGen	Bbs10	PhenoGen
RatGTEx	ENSRNOG00000026913	RatGTEx
Superfamily-SCOP	SSF48592	UniProtKB/TrEMBL
UniProt	B1H296	ENTREZGENE, UniProtKB/TrEMBL
	F7EKF1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-11-05	Bbs10	Bardet-Biedl syndrome 10	Bbs10	Bardet-Biedl syndrome 10 (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-28	Bbs10	Bardet-Biedl syndrome 10 (human)	RGD1560748_predicted	similar to hypothetical protein FLJ23560 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560748_predicted	similar to hypothetical protein FLJ23560 (predicted)	LOC500832	similar to hypothetical protein FLJ23560	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500832	similar to hypothetical protein FLJ23560			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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