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Gene: Camk1d (calcium/calmodulin-dependent protein kinase ID) Rattus norvegicus

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Symbol:

Camk1d

Name:

calcium/calmodulin-dependent protein kinase ID

RGD ID:

1560691

Description:

Predicted to enable calcium/calmodulin-dependent protein kinase activity. Predicted to be involved in several processes, including positive regulation of CREB transcription factor activity; positive regulation of neutrophil chemotaxis; and regulation of neuron projection development. Predicted to act upstream of or within negative regulation of apoptotic process and positive regulation of apoptotic process. Predicted to be located in cytoplasm and nucleus. Orthologous to human CAMK1D (calcium/calmodulin dependent protein kinase ID); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

calcium/calmodulin-dependent protein kinase type 1D; hypothetical protein LOC307124; LOC307124; RGD1560691; similar to calcium/calmodulin-dependent protein kinase 1D; uncharacterized protein LOC307124

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	77,491,191 - 77,892,018 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	77,491,220 - 77,892,012 (+)	Ensembl				GRCr8
mRatBN7.2	17	72,581,899 - 72,982,704 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	72,581,979 - 72,980,556 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	76,089,042 - 76,490,160 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	79,910,489 - 80,310,785 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	73,960,745 - 74,360,775 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	17	78,878,478 - 79,288,532 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	17	78,160,077 - 78,569,908 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	17	75,948,367 - 76,357,771 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	17	77,122,943 - 77,532,990 (+)	NCBI		F344_StmMcwi
Rnor_6.0	17	76,532,611 - 76,938,956 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	76,532,611 - 76,938,956 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	78,187,614 - 78,538,315 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	17	78,552,005 - 78,591,805 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	83,649,720 - 84,061,160 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	72,029,264 - 72,426,573 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldrin (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diclofenac (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

fulvestrant (ISO)

glyphosate (EXP)

hypochlorous acid (ISO)

inulin (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

succimer (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tacrolimus hydrate (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of apoptotic process (ISO)

nervous system development (IEA)

positive regulation of apoptotic process (ISO)

positive regulation of neuron projection development (IEA,ISO)

positive regulation of neutrophil chemotaxis (IEA,ISO)

positive regulation of phagocytosis (IEA,ISO)

positive regulation of respiratory burst (IEA,ISO)

regulation of dendrite development (IEA,ISO)

regulation of granulocyte chemotaxis (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

ATP binding (IEA)

calcium/calmodulin-dependent protein kinase activity (IEA,ISO)

calmodulin binding (IEA)

catalytic activity (IEA)

kinase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein serine/threonine kinase activity (IEA)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11050006	PMID:14980499	PMID:15840691	PMID:16324104	PMID:17056143	PMID:18400360

Genomics

Comparative Map Data

Camk1d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	77,491,191 - 77,892,018 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	77,491,220 - 77,892,012 (+)	Ensembl				GRCr8
mRatBN7.2	17	72,581,899 - 72,982,704 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	72,581,979 - 72,980,556 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	76,089,042 - 76,490,160 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	79,910,489 - 80,310,785 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	73,960,745 - 74,360,775 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	17	78,878,478 - 79,288,532 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	17	78,160,077 - 78,569,908 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	17	75,948,367 - 76,357,771 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	17	77,122,943 - 77,532,990 (+)	NCBI		F344_StmMcwi
Rnor_6.0	17	76,532,611 - 76,938,956 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	76,532,611 - 76,938,956 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	78,187,614 - 78,538,315 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	17	78,552,005 - 78,591,805 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	83,649,720 - 84,061,160 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	72,029,264 - 72,426,573 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

CAMK1D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	12,349,547 - 12,835,545 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	12,349,547 - 12,835,545 (+)	Ensembl			hg38	GRCh38
GRCh37	10	12,391,546 - 12,877,545 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	12,431,589 - 12,911,741 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	12,320,755 - 12,797,502 (+)	NCBI		Celera
Cytogenetic Map	10	p13	NCBI
HuRef	10	12,307,786 - 12,784,748 (+)	NCBI		HuRef
CHM1_1	10	12,391,537 - 12,871,781 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	12,360,834 - 12,849,903 (+)	NCBI		T2T-CHM13v2.0

Camk1d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	5,298,268 - 5,719,665 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	5,298,268 - 5,719,326 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	5,293,457 - 5,714,860 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	5,293,457 - 5,714,515 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	5,214,503 - 5,635,710 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	5,210,729 - 5,631,936 (-)	NCBI		MGSCv36	mm8
Celera	2	5,248,039 - 5,664,845 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	3.39	NCBI

Camk1d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	391,235 - 813,598 (+)	Ensembl
ChiLan1.0	NW_004955462	391,235 - 819,240 (+)	NCBI	ChiLan1.0	ChiLan1.0

CAMK1D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	24,879,343 - 25,360,851 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	24,884,690 - 25,366,182 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	12,359,213 - 12,840,464 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	12,471,340 - 12,809,098 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	12,540,854 - 12,808,599 (+)	Ensembl			panPan2	panpan1.1

CAMK1D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	23,680,395 - 24,113,922 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	23,685,672 - 24,114,084 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	20,698,974 - 21,138,879 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	24,052,518 - 24,484,818 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	24,052,523 - 24,484,827 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	21,178,935 - 21,612,394 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	22,021,253 - 22,454,982 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	22,737,896 - 23,169,796 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Camk1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	26,461,700 - 26,858,995 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	2,632,107 - 3,023,869 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	2,626,909 - 2,768,304 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAMK1D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	59,204,724 - 59,630,285 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	59,199,541 - 59,630,191 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	64,912,917 - 64,969,603 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAMK1D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	12,392,452 - 12,873,294 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	12,809,028 - 12,872,778 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	17,902,237 - 18,395,258 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Camk1d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624805	5,193,397 - 5,408,011 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624805	5,047,885 - 5,413,264 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Camk1d
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	11,643,288 - 12,042,927 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Camk1d
3173 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	856
Count of miRNA genes:	320
Interacting mature miRNAs:	434
Transcripts:	ENSRNOT00000024099
Prediction methods:	Microtar, Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	70613502	86062352	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
61466	Niddm12	Non-insulin dependent diabetes mellitus QTL 12	3.2	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	65154872	93515804	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	68550040	93515804	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63697147	82818564	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	64569820	86954580	Rat

Markers in Region

D17Got92

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,896,398 - 72,896,562 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,844,085 - 76,844,246	NCBI	Rnor6.0
Rnor_5.0	17	78,499,779 - 78,499,862	NCBI	Rnor5.0
Rnor_5.0	17	78,499,780 - 78,499,862	NCBI	Rnor5.0
RGSC_v3.4	17	83,975,678 - 83,975,842	RGD	RGSC3.4
RGSC_v3.4	17	83,975,679 - 83,975,842	UniSTS	RGSC3.4
RGSC_v3.1	17	83,986,512 - 83,986,675	RGD
RH 3.4 Map	17	723.6	RGD
RH 3.4 Map	17	723.6	UniSTS
RH 2.0 Map	17	620.3	RGD
Cytogenetic Map	17	q12.3	UniSTS

BF397554

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,606,474 - 72,606,631 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,556,913 - 76,557,069	NCBI	Rnor6.0
Rnor_5.0	17	78,211,870 - 78,212,026	UniSTS	Rnor5.0
RGSC_v3.4	17	83,674,299 - 83,674,455	UniSTS	RGSC3.4
Celera	17	72,053,836 - 72,053,992	UniSTS
RH 3.4 Map	17	723.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF402566

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,659,932 - 72,660,031 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,609,771 - 76,609,869	NCBI	Rnor6.0
Rnor_5.0	17	78,265,795 - 78,265,893	UniSTS	Rnor5.0
RGSC_v3.4	17	83,731,832 - 83,731,930	UniSTS	RGSC3.4
Celera	17	72,106,412 - 72,106,510	UniSTS
RH 3.4 Map	17	728.6	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BI294222

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,841,339 - 72,841,456 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,790,178 - 76,790,294	NCBI	Rnor6.0
Rnor_5.0	17	78,445,874 - 78,445,990	UniSTS	Rnor5.0
RGSC_v3.4	17	83,919,602 - 83,919,718	UniSTS	RGSC3.4
Celera	17	72,286,411 - 72,286,527	UniSTS
RH 3.4 Map	17	723.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BE120058

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,761,508 - 72,761,703 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,710,668 - 76,710,862	NCBI	Rnor6.0
Rnor_5.0	17	78,366,671 - 78,366,865	UniSTS	Rnor5.0
RGSC_v3.4	17	83,838,845 - 83,839,039	UniSTS	RGSC3.4
Celera	17	72,207,040 - 72,207,234	UniSTS
RH 3.4 Map	17	727.4	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AU047982

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,904,683 - 72,904,846 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,861,771 - 76,861,933	NCBI	Rnor6.0
Rnor_5.0	17	78,517,197 - 78,517,359	UniSTS	Rnor5.0
Celera	17	72,348,125 - 72,348,287	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH135357

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,682,079 - 72,682,260 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,631,910 - 76,632,090	NCBI	Rnor6.0
Rnor_5.0	17	78,287,934 - 78,288,114	UniSTS	Rnor5.0
RGSC_v3.4	17	83,753,971 - 83,754,151	UniSTS	RGSC3.4
Celera	17	72,128,533 - 72,128,713	UniSTS
RH 3.4 Map	17	723.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH137918

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	72,840,541 - 72,840,723 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,789,380 - 76,789,561	NCBI	Rnor6.0
Rnor_5.0	17	78,445,076 - 78,445,257	UniSTS	Rnor5.0
RGSC_v3.4	17	83,918,804 - 83,918,985	UniSTS	RGSC3.4
Celera	17	72,285,613 - 72,285,794	UniSTS
RH 3.4 Map	17	723.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BM385825

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	77,494,743 - 77,494,898 (+)	Marker Load Pipeline
mRatBN7.2	17	72,585,399 - 72,585,554 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	76,535,907 - 76,536,061	NCBI	Rnor6.0
Rnor_5.0	17	78,190,910 - 78,191,064	UniSTS	Rnor5.0
RGSC_v3.4	17	83,653,500 - 83,653,654	UniSTS	RGSC3.4
Celera	17	72,032,684 - 72,032,838	UniSTS
RH 3.4 Map	17	729.3	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024099 ⟹ ENSRNOP00000024099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	77,523,334 - 77,892,012 (+)	Ensembl
mRatBN7.2 Ensembl	17	72,613,992 - 72,980,556 (+)	Ensembl
Rnor_6.0 Ensembl	17	76,532,611 - 76,938,956 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105055 ⟹ ENSRNOP00000095984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	77,491,220 - 77,892,012 (+)	Ensembl
mRatBN7.2 Ensembl	17	72,581,979 - 72,980,556 (+)	Ensembl

RefSeq Acc Id:

NM_001107365 ⟹ NP_001100835

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	77,491,323 - 77,889,870 (+)	NCBI
mRatBN7.2	17	72,581,979 - 72,980,556 (+)	NCBI
Dahl_SR_JrHsd	17	78,878,478 - 79,288,532 (+)	NCBI
Lyon_Normotensive	17	78,160,077 - 78,569,908 (+)	NCBI
Lyon_Hypertensive	17	75,948,367 - 76,357,771 (+)	NCBI
F344_StmMcwi	17	77,122,943 - 77,532,990 (+)	NCBI
Rnor_6.0	17	76,532,611 - 76,938,956 (+)	NCBI
Rnor_5.0	17	78,187,614 - 78,538,315 (+)	NCBI
Rnor_5.0	17	78,552,005 - 78,591,805 (+)	NCBI
RGSC_v3.4	17	83,649,720 - 84,061,160 (+)	RGD
Celera	17	72,029,264 - 72,426,573 (+)	RGD

Sequence:

show sequence

GCGAAAGAGAAACTGCCGAAGAGGAAGCTCTGCGGCAGCCCGAGCCTCCCTGCGCTCCGTATCC
CCGCGCCCGGCATCCCCCGGCGCCCGCGCCGCGCCTCCGGCGCCCCTTCCCCAGCGCACCCCCC
GGCCGCCCTACAGCACTAGTCTGCCATGGCCCGGGAGAACGGCGAGAGCAGCTCCTCCTGGAAA
AAGCAAGCGGAAGACATCAAGAAGATCTTCGAGTTCAAGGAGACCCTCGGAACTGGGGCCTTTT
CTGAAGTTGTGTTAGCTGAAGAGAAAGCAACGGGGAAGCTCTTTGCAGTGAAGTGCATCCCGAA
GAAGGCGCTGAAGGGCAAAGAGAGTAGCATCGAGAACGAGATTGCCGTGCTTAGAAAGATTAAG
CATGAAAACATTGTGGCCTTGGAAGATATTTACGAAAGCCCGAACCACCTCTACCTGGTCATGC
AACTTGTGTCTGGTGGAGAACTCTTTGATCGGATAGTGGAGAAGGGATTTTACACAGAGAAAGA
TGCCAGCACTCTCATCCGCCAGGTCCTGGATGCTGTGTACTATCTCCACAGAATGGGCATTGTC
CACAGGGACCTCAAGCCAGAAAACCTCTTGTACTACAGTCAAGACGAGGAGTCCAAAATAATGA
TCAGTGACTTTGGCTTGTCAAAAATGGAGGGCAAAGGAGACGTGATGTCTACGGCCTGCGGAAC
CCCGGGCTATGTTGCGCCAGAAGTTCTTGCCCAGAAGCCGTACAGCAAAGCGGTTGACTGCTGG
TCTATTGGGGTGATCGCCTATATCCTGCTCTGTGGTTACCCTCCTTTTTATGATGAAAATGACT
CGAAGCTGTTTGAACAGATCCTCAAGGCAGAATATGAGTTTGATTCCCCCTACTGGGATGACAT
CTCCGACTCTGCAAAAGACTTCATTCGGAATCTGATGGAGAAAGACCCAAATAAAAGATACACC
TGTGAGCAGGCAGCTCGACACCCATGGATCGCTGGTGACACAGCCCTCAGCAAAAACATTCACG
AATCTGTCAGTGCCCAGATCCGGAAGAATTTCGCAAAGAGCAAATGGAGACAAGCGTTTAATGC
CACGGCCGTCGTGAGACATATGCGGAGGCTACAGCTCGGCAGCAGCCTGGACAGCTCAAATGCA
AGTGTCTCAAGCAACCTCAGTTTGGCCAGCCAAAAAGATTGTCTGGCACCTTCCACGCTCTGTA
GTTTCCTTTCTTCTTCGTCGGGGGTCGCAGGAGTCGGAGCTGAGAGGAGACCCAGGCCCACCAC
TGTGACAACAGGGCACACTGGAAGCAAGTGACCCGGCTCTGGAGGTGGAACCCAGGGGGCGGGG
CCGGGGAAGGAGAAGCCCCTGGCCGGAGCAGCTCCAGCATCAGAAACCCCACCCACCCTGCATG
GTGCGCCTGCATAGGACTGGAAGACAGAAGTTTTTTTATGGCCATATTTTATACTGCAATTCTG
ATGTGTTCATTTCTCACTAACTGTACTGACTGACTCAAGGGGAGCTGACATCACAGGAGATCTG
GTGCTGTATATACGAATCTTGCAAAGCTCTAACTGAATGGACCTTCTTGCTCCCCTCCCCCAAC
TCCACCACTTCCGCTCTCTCAGTGTAGGCAGCCGTCTAGGGTGTATTTTTTCATGGAAAAAAAT
ATCAAGGTTTCAACTGGATTATTTAAGTATTGGTAAATGTCGTGCATTAGGAATTCCTTTGCTT
TTGAGATGTGTCTTTTTGATCTCTGTTAGTCACGTGATCTCTATCATTTACTCTTTAATGGTGG
TTTTACGTTAACATTTACGAGGTTGTTTTCCCCTCCCAGAAGGGTTAAAAGGTATTTTTTAAAA
ATTCTAAGAGGATCAAGAGTCTGTGTCTGCGGCTAAGAGTGCACATTACTTGTGTTCCTTCGCT
CCCAGTCCCTTCCTCCAGAGGTCACCCCAGCAGCTGCGCGCTGGGCTGGCTTCTCGCCAGGTGG
CTTTTGGCAGGGACCCTGCAGAAAACCTTACAGGCAGCTTCCCCTGAGAACTGTTTACTAACCA
CAGAAGATAGAAGCTTGTTTCCTGCACCCTGAACTCCACAGGTGAACTGCGCTCCAGGAACGGG
ATCCCCACAGTGCCAAGATTTAGGAGCCTCCCTTGCAGAAGGGACGGACTGCCATCTTGTTTTA
TAAATGAACCACACACAGCCCTCAATTCTCATGGGGGATGATGGATGAAACTCTGATCTCAGCT
ATGCACTTTTAAGACGAATCTCTATCTGTTTTAATTTTTTAAATTCATTTCTAATAGTACCCTT
CAAATGGCCTATACCACACACTCCCCGCCACACACATACACATTTTTACCCTGTTCTCTCATGA
GCATTACCCAAGAGAGGGGACAGAAATGGCCTCAAAAAGAAACCTTTTGTTTTAAGTGGAAAGG
AAAAACACACCAAGAGAGCAGAATATTGCCCATCTCAGAGATGGCTGACTCAGCAAAATCCAGC
TGGTACCCAAGCCTTCACTTACGTCAGAAGAATCTGAAACTCACAGTACCTGTGGTAGTCAGGC
TGTTGGGTGTCCTGATTGTAACAAGGACTGGAGGATTTTCCAGGATGTGGAACTTGAAGGCTAA
AATCAGGAATGCCCCGTGAAAACCAGTGCATGTCGTTGAACTGCACAGAGGCTACATAGGCAGG
AAGAGCAAGCATAGCTCATAGCCCAGGGCAAACATTCTCCAAGGAGGCTCTCAGAGACCAAGGC
AAATGGTTCGAATGCCAGTTTTTCTAATATTCCCCTTCAGCTCTCATGTCTGTCTAAAGCCTGA
GCCTCATCTGCAGTCAGCTATAGTCTGCCAAGATGGGCTGTGATATGTCTCCCTCCTGGCTCAG
GGGCTGTCCTCCCAGGCTGTTTTACTCATGCCCTTCTTATGAACTTGCCAGCCATAGAAATTCC
TGCTGGACAAGTAAGTCATTCTTGTCACCCCTACACTTTGCCCCCAGCCCTCTCCAGTGCGCAC
ACACACACACACACACACACACACACACATTGTCACCAGGCAGGCAACTCCAGCTCCACAAAGG
ACACGGTGCAAGATATATAAGAGCAGTTTCAAACTCAGACATCTGGTCTACCCTGTTCTCCCTT
ATATCAAATAAATACAGAACAGGTAAAGAGTAAGCCCTGGTAAAGGTGTCTACCTTGCAATCAA
CCATGCTTGGTTCAACCTTGACACATCAGGTCTCCATGAACTAGTGTAAGACAGTGATAGCTAG
TGCCAGCCCAGTGGTAGGCAAGGTTGAACATGCCATCGGGAAGCCCGTGCATGACATCGTTTCC
TACTGTTTTAAGAAAGGTGAAAATAAGTGCCGCTAGGGAGAGTCTTCTATTCCGAGAAGGTCAT
TGTGGCAGAAAGATAAAGTTTCACTGCCACATCGTGGTAGTACTATGTAATAATAAATGAGAAC
ATAGAATGGACTTAGTCTTAAGACCTAGAAAGGTGGGTAACAAAGTCTCAGCTCCCTTGCCCTT
CTCAGATTCCAGTGACATAAGCTGAGAATTGCACTACCAGTGTAATGAATAAATGTCCCACTGT
GTTTGCCAGCGTCCACACAGGTCCCCTCGCAGACTATTTTTCTAATACCAGGCTCTCCCCACCA
CCTCCATTATATTACCTTTTCACATTTTCTAGGTATATGTATATCCTCACTTAGCTATGAAATA
TTGAAATACTTCCAGAATAGTCCTTATCCCCGCCTTCCTGCCCTTCACCTATACTTGAGGCAGA
AAGAGCAGCTAATACTCATCCAAAACCAACAGTGAATGGAAGCTCTCACTCAGCCCCAACAGAG
CCAATAGCTTCTCATTCTAAAGCAAGGGATCTCTAGAGTTTGGAACTTCATGCTGGGGTTAGGA
AGCAACAGAGGCAGAGGCTGGAGGGGCAGGGAATGCCACAGAATCTTTGAGGACATGGAGACTC
CAGTGACAGAGACAGCAATCCCAGTGTTGTGGGTAGCCTTTGTAACAAGCCCTAGCAAGTTTTT
ATCCCTTCCTACTACCTCTAACCCCAAAGAGACTCTGACTCCAAAAGATCAGCTGGCATTCATA
TCTCTGTGTGAAAGAAAAGGACTATGGAGAAGGTATTTAAACAACCCAAAAGGTATGGATTCCT
GCCCTTCACCTTGATCCTAGGTCACTTCTCAAACACTACCTTGAGTCTCCAGCCATACCACTTT
AATTGTGCCCAACGTCATTGCAGATTCCTCCTTAATAAAATAGCCACCTCCACTTGCACACCAA
CTCATGGTCTAGAGACGCTTCCTCTCTTCAGGTTTCTCTGAGTGTGGTGTCTGGAAACACAGCA
TTTGGTTCAGTGAATCCCAGATTCAGTTTACTTATTTAAGCTTTTTTCTATACTTCAGTACTGG
ATAGCTTGTCAATCAATGGCAGAGAGAATTGGCCATTATACTATAGGCCAAGAGCAACATGGAC
ACAGGAAAAGAAATGAGTTGGTCCTCTCTTGAGAGTTTTGACCCCTCCTGTAGGATGTAAAACT
TGATATGGTCAGAGCTCCTGGGTTTGATGGGTTTTGAGCATGTTTAAACATGT

hide sequence

RefSeq Acc Id:

NM_001433924 ⟹ NP_001420853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Dahl_SR_JrHsd	17	78,878,478 - 79,288,532 (+)	NCBI
Lyon_Normotensive	17	78,160,077 - 78,569,908 (+)	NCBI
Lyon_Hypertensive	17	75,948,367 - 76,357,771 (+)	NCBI
F344_StmMcwi	17	77,122,943 - 77,532,990 (+)	NCBI

RefSeq Acc Id:

XM_039095777 ⟹ XP_038951705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	77,491,191 - 77,892,018 (+)	NCBI
mRatBN7.2	17	72,581,899 - 72,982,704 (+)	NCBI

RefSeq Acc Id:

XM_039095778 ⟹ XP_038951706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	77,491,192 - 77,892,018 (+)	NCBI
mRatBN7.2	17	72,581,900 - 72,982,704 (+)	NCBI

RefSeq Acc Id:

XM_039095779 ⟹ XP_038951707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	77,525,791 - 77,892,018 (+)	NCBI
mRatBN7.2	17	72,620,777 - 72,982,704 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100835	(Get FASTA)	NCBI Sequence Viewer
	NP_001420853	(Get FASTA)	NCBI Sequence Viewer
	XP_038951705	(Get FASTA)	NCBI Sequence Viewer
	XP_038951706	(Get FASTA)	NCBI Sequence Viewer
	XP_038951707	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78664	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024099
	ENSRNOP00000024099.7
	ENSRNOP00000095984
	ENSRNOP00000095984.1

RefSeq Acc Id:

NP_001100835 ⟸ NM_001107365

- UniProtKB:

A0A8I6AUH0 (UniProtKB/TrEMBL), A6JLY7 (UniProtKB/TrEMBL), F1LVR4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKES
SIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQV
LDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV
LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFI
RNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMR
RLQLGSSLDSSNASVSSNLSLASQKDCLAPSTLCSFLSSSSGVAGVGAERRPRPTTVTTGHTGS
K

hide sequence

Ensembl Acc Id:

ENSRNOP00000024099 ⟸ ENSRNOT00000024099

RefSeq Acc Id:	XP_038951705 ⟸ XM_039095777
- Peptide Label:	isoform X1
- UniProtKB:	F1LVR4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951706 ⟸ XM_039095778
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038951707 ⟸ XM_039095779
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000095984 ⟸ ENSRNOT00000105055

RefSeq Acc Id:

NP_001420853 ⟸ NM_001433924

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LVR4-F1-model_v2	AlphaFold	F1LVR4	1-383	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560691	AgrOrtholog
BioCyc Gene	G2FUF-8700	BioCyc
Ensembl Genes	ENSRNOG00000017882	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024099	ENTREZGENE
	ENSRNOT00000024099.8	UniProtKB/TrEMBL
	ENSRNOT00000105055	ENTREZGENE
	ENSRNOT00000105055.2	UniProtKB/TrEMBL
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
KEGG Report	rno:307124	UniProtKB/TrEMBL
NCBI Gene	307124	ENTREZGENE
PANTHER	SERINE/THREONINE-PROTEIN KINASE	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PhenoGen	Camk1d	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017882	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A0A8I6AUH0	ENTREZGENE, UniProtKB/TrEMBL
	A6JLY7	ENTREZGENE, UniProtKB/TrEMBL
	F1LVR4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-11	Camk1d	calcium/calmodulin-dependent protein kinase ID	RGD1560691	similar to calcium/calmodulin-dependent protein kinase 1D	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1560691	similar to calcium/calmodulin-dependent protein kinase 1D	RGD1560691_predicted	similar to calcium/calmodulin-dependent protein kinase 1D (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1560691_predicted	similar to calcium/calmodulin-dependent protein kinase 1D (predicted)	LOC307124	similar to calcium/calmodulin-dependent protein kinase 1D	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC307124	similar to calcium/calmodulin-dependent protein kinase 1D			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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