Gene: Ccdc190 (coiled-coil domain containing 190) Rattus norvegicus
Analyze
Symbol:
Ccdc190
Name:
coiled-coil domain containing 190
RGD ID:
1560672
Description:
Orthologous to human CCDC190 (coiled-coil domain containing 190); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; Cuprizon.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
coiled-coil domain-containing protein 190; coiled-coil domain-containing protein C1orf110 homolog; hypothetical protein LOC498270; LOC498270; RGD1560672; similar to novel protein; uncharacterized protein LOC498270
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 13 84,679,959 - 84,687,661 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 13 84,679,986 - 84,687,658 (+) Ensembl GRCr8 mRatBN7.2 13 82,147,161 - 82,154,863 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 82,147,176 - 82,154,863 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 13 84,773,790 - 84,781,366 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 13 86,067,893 - 86,075,471 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 13 83,299,032 - 83,306,608 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 13 88,265,331 - 88,272,906 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 13 88,265,331 - 88,272,906 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 13 92,891,738 - 92,899,444 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 13 85,750,175 - 85,757,750 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 13 81,809,369 - 81,816,944 (+) NCBI Celera Cytogenetic Map 13 q24 NCBI
JBrowse:
Only show annotations with direct experimental evidence (0 objects hidden)
Ccdc190 Rat 2,2',5,5'-tetrachlorobiphenyl decreases expression ISO CCDC190 (Homo sapiens) 6480464 2,5,2',5'-tetrachlorobiphenyl analog results in decreased expression of CCDC190 mRNA CTD PMID:36804509 Ccdc190 Rat 6-propyl-2-thiouracil decreases expression EXP 6480464 Propylthiouracil results in decreased expression of CCDC190 mRNA CTD PMID:25825206 Ccdc190 Rat acrylamide decreases expression ISO Ccdc190 (Mus musculus) 6480464 Acrylamide results in decreased expression of CCDC190 mRNA CTD PMID:30807115 Ccdc190 Rat aldehydo-D-glucose multiple interactions ISO Ccdc190 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Ccdc190 Rat antirheumatic drug increases expression ISO CCDC190 (Homo sapiens) 6480464 Antirheumatic Agents results in increased expression of CCDC190 mRNA CTD PMID:24449571 Ccdc190 Rat benzo[a]pyrene increases methylation ISO CCDC190 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of CCDC190 promoter CTD PMID:27901495 Ccdc190 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of CCDC190 mRNA CTD PMID:25181051|PMID:29097150|PMID:30816183|PMID:32528016|PMID:34947998 Ccdc190 Rat crocidolite asbestos decreases expression ISO CCDC190 (Homo sapiens) 6480464 Asbestos, Crocidolite results in decreased expression of CCDC190 mRNA CTD PMID:29523930 Ccdc190 Rat Cuprizon increases expression EXP 6480464 Cuprizone results in increased expression of CCDC190 mRNA CTD PMID:26577399 Ccdc190 Rat D-glucose multiple interactions ISO Ccdc190 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Ccdc190 Rat DDE decreases expression ISO CCDC190 (Homo sapiens) 6480464 Dichlorodiphenyl Dichloroethylene results in decreased expression of CCDC190 mRNA CTD PMID:38568856 Ccdc190 Rat ethanol increases expression ISO Ccdc190 (Mus musculus) 6480464 Ethanol results in increased expression of CCDC190 mRNA CTD PMID:30319688 Ccdc190 Rat ethanol affects expression ISO Ccdc190 (Mus musculus) 6480464 Ethanol affects the expression of CCDC190 mRNA CTD PMID:30319688 Ccdc190 Rat folic acid multiple interactions ISO CCDC190 (Homo sapiens) 6480464 [Folic Acid deficiency co-treated with Methotrexate] results in decreased expression of CCDC190 mRNA CTD PMID:24657277 Ccdc190 Rat fructose multiple interactions ISO Ccdc190 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Ccdc190 Rat glucose multiple interactions ISO Ccdc190 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Ccdc190 Rat glyphosate multiple interactions ISO Ccdc190 (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Ccdc190 Rat lipopolysaccharide multiple interactions ISO CCDC190 (Homo sapiens) 6480464 [S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of CCDC190 mRNA CTD PMID:35811015 Ccdc190 Rat lipopolysaccharide decreases expression ISO CCDC190 (Homo sapiens) 6480464 Lipopolysaccharides results in decreased expression of CCDC190 mRNA CTD PMID:35811015 Ccdc190 Rat methotrexate multiple interactions ISO CCDC190 (Homo sapiens) 6480464 [Folic Acid deficiency co-treated with Methotrexate] results in decreased expression of CCDC190 mRNA CTD PMID:24657277 Ccdc190 Rat N,N-diethyl-m-toluamide multiple interactions EXP 6480464 [Permethrin co-treated with DEET] results in increased methylation of CCDC190 gene CTD PMID:33148267 Ccdc190 Rat permethrin multiple interactions EXP 6480464 [Permethrin co-treated with DEET] results in increased methylation of CCDC190 gene CTD PMID:33148267 Ccdc190 Rat S-(1,2-dichlorovinyl)-L-cysteine multiple interactions ISO CCDC190 (Homo sapiens) 6480464 [S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of CCDC190 mRNA CTD PMID:35811015 Ccdc190 Rat silicon dioxide decreases expression ISO CCDC190 (Homo sapiens) 6480464 Silicon Dioxide analog results in decreased expression of CCDC190 mRNA CTD PMID:23806026 Ccdc190 Rat thioacetamide decreases expression EXP 6480464 Thioacetamide results in decreased expression of CCDC190 mRNA CTD PMID:23411599 Ccdc190 Rat triptonide increases expression ISO Ccdc190 (Mus musculus) 6480464 triptonide results in increased expression of CCDC190 mRNA CTD PMID:33045310
References
Genomics
Comparative Map Data
Ccdc190 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 13 84,679,959 - 84,687,661 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 13 84,679,986 - 84,687,658 (+) Ensembl GRCr8 mRatBN7.2 13 82,147,161 - 82,154,863 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 82,147,176 - 82,154,863 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 13 84,773,790 - 84,781,366 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 13 86,067,893 - 86,075,471 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 13 83,299,032 - 83,306,608 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 13 88,265,331 - 88,272,906 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 13 88,265,331 - 88,272,906 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 13 92,891,738 - 92,899,444 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 13 85,750,175 - 85,757,750 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 13 81,809,369 - 81,816,944 (+) NCBI Celera Cytogenetic Map 13 q24 NCBI
CCDC190 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 162,851,020 - 162,868,833 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 162,824,458 - 162,868,957 (-) Ensembl hg38 GRCh38 GRCh37 1 162,820,810 - 162,838,623 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 161,090,711 - 161,105,229 (-) NCBI Build 36 Build 36 hg18 NCBI36 Celera 1 135,928,424 - 135,942,942 (-) NCBI Celera Cytogenetic Map 1 q23.3 NCBI HuRef 1 134,069,292 - 134,083,926 (-) NCBI HuRef CHM1_1 1 164,246,607 - 164,261,131 (-) NCBI CHM1_1 T2T-CHM13v2.0 1 162,195,581 - 162,213,515 (-) NCBI T2T-CHM13v2.0
Ccdc190 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 1 169,756,172 - 169,764,816 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 1 169,756,217 - 169,762,222 (+) Ensembl GRCm39 Ensembl GRCm39 GRCm38 1 169,928,599 - 169,935,318 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 1 169,928,648 - 169,934,653 (+) Ensembl mm10 GRCm38 MGSCv37 1 171,859,070 - 171,864,784 (+) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 1 171,765,614 - 171,771,328 (+) NCBI MGSCv36 mm8 Celera 1 172,371,047 - 172,376,701 (+) NCBI Celera Cytogenetic Map 1 H3 NCBI cM Map 1 76.84 NCBI
Ccdc190 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955462 13,524,947 - 13,533,123 (+) Ensembl ChiLan1.0 NW_004955462 13,524,706 - 13,532,251 (+) NCBI ChiLan1.0 ChiLan1.0
CCDC190 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 86,923,097 - 86,930,523 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 86,591,695 - 86,599,112 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 138,267,683 - 138,301,945 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 142,065,007 - 142,071,967 (-) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 142,064,026 - 142,070,544 (-) Ensembl panPan2 panpan1.1
CCDC190 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 38 19,942,575 - 19,953,744 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 38 19,942,089 - 19,950,955 (+) Ensembl canFam3 CanFam3.1 Dog10K_Boxer_Tasha 38 19,997,772 - 20,008,916 (+) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 38 20,026,146 - 20,037,305 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 38 20,026,113 - 20,037,367 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 38 20,001,278 - 20,012,412 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 38 20,353,295 - 20,364,406 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 38 20,644,221 - 20,663,537 (+) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
Ccdc190
CCDC190 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 87,559,992 - 87,568,370 (+) Ensembl susScr11 Sscrofa11.1 Sscrofa11.1 4 87,560,027 - 87,568,373 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 95,272,918 - 95,280,574 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CCDC190
Ccdc190
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 57 Count of miRNA genes: 51 Interacting mature miRNAs: 57 Transcripts: ENSRNOT00000031190 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction 
