Timm17al1 (translocase of inner mitochondrial membrane 17a-like 1) - Rat Genome Database

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Gene: Timm17al1 (translocase of inner mitochondrial membrane 17a-like 1) Rattus norvegicus
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Symbol: Timm17al1
Name: translocase of inner mitochondrial membrane 17a-like 1
RGD ID: 1560665
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; tetrachloromethane
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC500655; mitochondrial import inner membrane translocase subunit Tim17-A-like; RGD1560665; similar to translocator of inner mitochondrial membrane 17a
Related Functional Gene: Timm17a  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8685,372,104 - 85,372,927 (+)NCBIGRCr8
mRatBN7.2679,637,054 - 79,637,877 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0683,252,007 - 83,253,099 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0692,771,465 - 92,772,538 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4682,484,977 - 82,485,492 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera678,291,791 - 78,292,601 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Timm17al1
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000007325
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat

Markers in Region
RH136499  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2679,637,593 - 79,637,802 (+)MAPPERmRatBN7.2
mRatBN7.21346,731,287 - 46,731,496 (+)MAPPERmRatBN7.2
Rnor_6.01352,124,812 - 52,125,020NCBIRnor6.0
Rnor_6.0683,252,719 - 83,252,927NCBIRnor6.0
Rnor_5.01357,174,343 - 57,174,551UniSTSRnor5.0
Rnor_5.0692,772,158 - 92,772,366UniSTSRnor5.0
RGSC_v3.4682,484,770 - 82,484,978UniSTSRGSC3.4
RGSC_v3.41348,297,687 - 48,297,895UniSTSRGSC3.4
Celera1347,051,865 - 47,052,073UniSTS
Celera678,292,310 - 78,292,518UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map6q23UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_039113215   ⟹   XP_038969143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2679,637,054 - 79,637,877 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-37354 BioCyc
NCBI Gene 500655 ENTREZGENE
PhenoGen Timm17al1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Timm17al1  translocase of inner mitochondrial membrane 17a-like 1  RGD1560665  similar to translocator of inner mitochondrial membrane 17a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560665  similar to translocator of inner mitochondrial membrane 17a   RGD1560665_predicted  similar to translocator of inner mitochondrial membrane 17a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560665_predicted  similar to translocator of inner mitochondrial membrane 17a (predicted)  LOC500655  similar to translocator of inner mitochondrial membrane 17a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500655  similar to translocator of inner mitochondrial membrane 17a      Symbol and Name status set to provisional 70820 PROVISIONAL